UK e-Science Grid Infrastructure meets Biological Research Challenges Malcolm Atkinson Director of National e-Science Centre www.nesc.ac.uk 2 nd October 2002 The UK Biological Grid — Data and Computation The Wellcome Trust Genome Campus Hinxton, Cambridgeshire
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UK e-Science Grid Infrastructure meets Biological Research Challenges Malcolm Atkinson Director of National e-Science Centre 2 nd October.
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Computation Data mining Input to models Calibration of models
Presentation Publication of results Visualisation
GGF DAIS WGChairs
Norman Paton (Manchester Uni.)Leanne Guy (CERN)Dave Pearson (Oracle UK)
ActivityBoF GGF4 TorontoWG Meeting GGF5 EdinburghPapers for GGF6Workshops & Mail lists
GoalsAgree Standards for Database Access & IntegrationFreely available reference implementations
OGSA-DAI one source & focus for discussions
Norman Paton,Inderpal Narang,
Leanne Guy, Susan Maliaka, Greg Ricardi, …
OGSA-DAI project
Lego kit for Data Access & IntegrationComponents for e-Science Applications
Accelerated Application DevelopmentMultiple Data Models
Distributed DataAccess via Grid & Proxies
Integration, Translation & Transformation
Open Source Reference Implementation
For DAIS-WG standard
Trigger for Component ConstructionStart a community
Oxford
Glasgow
Cardiff
Southampton
London
Belfast
Daresbury Lab
RAL
OGSA-DAI Partners
EPCC & NeSC
Newcastle
IBMUSA
IBM Hursley
Oracle
Manchester
EPCC & NeSCIBM UKIBM USAManchester e-SCNewcastle e-SCOracle £3 million, 18 months, started February 2002
Cambridge
Hinxton
Primary Components
Client
Consumer
GDS
GDSF
GDSR
DB
Advanced Components
Consumer
GDS Client
GDT
Translation
Translation
DB
GDS:PerformScript
Composed Components
Translation
Consumer
GDS
Translation
GDT
GDS:performScript
GDT
GDT
Client
GDS:performScript
GDS:performScript
GDS:performScript
Distributed Query
Registry R
Client
Consumer GDT
GDS
GDTV
DQP
GDT
GDTV
GDS
QPM
NS
F Factory
Evaluator
GDTV GDT
Evaluator
GDTV GDT
Evaluator
GDTV GDT
GDS
GDS
GDTV DB
T
Q
T
PNM
T
PNM
GDS
T
GDTV
D Q P : D is t ribu te d Q u e ry Pro ce s s o rG D T : G rid D a ta Tra n s po rtT : Tra n s la t io nQ : Q u e ryG D TV : G rid D a ta Tra n s po rt V e h icleF : Fa cto ryQ PM : Q u e ry Pro g re s M o n ito rPNM : Pro g re s s No t if ica t io n M e s s a g eA M : A pplica t io n M e ta da taC R M : C o m pu ta t io n a l R e s o u rce M e ta da taNS : No t if ica t io n S in k
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OGSA-DAI Time Line
Feb ’02 May ’02 Jul ’02 Sep ’02 Dec ’02 Feb ’03 May ’03 Sep ’03
Ship Alpha Release for GT3 Integration
RDB + GT2 / OGSA Prototypes Available
XML + OGSA Prototype Available
Design Documents & Demos for DAIS WG @ GGF5
XML + OGSA Prototypes for Early Adopters
WS + GSI UK support ( > 100 downloads)
Phase 2 StartsPhase 1 Starts
Presentation & Beta @ GGF7
GGF6 WG Papers & Prototypes
Productisation, RAMPS &Extension
OGSA-DAI Summary
On Schedule & Going WellContributions via DAIS-WG @ GGF5 & 6Releases with GT3 Releases scheduledStatus: Early Days
Released prototypesTested Architectural DesignUsing OGSAWorking with Early Adopter Pilot Projects
AstroGrid & MyGrid
Influence OGSA-DAI directionVia DAIS-WG & Direct messages to us
Biomedical e-Scientists
Is this one species?Understanding bird energyUnderstanding a river / ocean interactionUnderstanding a biochemical pathwayUnderstanding a cellUnderstanding a Heart or BrainUnderstanding RhododendraUnderstanding Evolution…
No One-Size fits all solutionsBut sharable re-usable components
Opportunities
Many, many …More than we can addressCompute needsData management needsData integration needs…
Must choose some pioneersTo meet a range of common requirementsTo provoke rich & high-level platformTo generate re-usable components
A Long-Term Commitment Needed
Advancing Biological Grid
Grid Plumbing & Security Infrastructure
Scheduling Accounting Authorisation
Monitoring Diagnosis Logging
Scientific Application
Data & Compute Resources
Distributed
Biological Users
Data Access
Data Integration
Structured Data
Biomedical (Grid) Application Component Library
Summary
e-ScienceData as well as Compute Challenges
Needed to be put together
Need ubiquitous supported consistent platforms
GridA (potentially) invaluable platformOnly show in town
Data IntegrationHard Develop & Use Standard kit of partsStarted to build the kit
OpportunitiesNo one-size fits all, but re-usable subsystemsInvest in wider range of Problem driven pioneeringStrategic choices needed