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Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates in the experimental cell data. pyrite Select
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Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Mar 26, 2015

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Page 1: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Tutorial for Elasticity tool

(1) Select

(2) Depress

For speed, an elastic calculationshould be preceded by a careful

optimization of atom coordinatesin the experimental cell data.

pyrite

Select

Page 2: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

VASP interface dialog

The k-mesh suggestion and info is implemented in the same way as for ABINIT

For the various options, consult the VASP manual e.g. at: http://cms.mpi.univie.ac.at/vasp/vasp/vasp.html

Select

If unsure,select the

first potential

The suggestion was 3x3x3, which would be OK for an insulator, but sulfides border on the metallic behaviour. The k-mesh was accordingly upped to 5x5x5.

Page 3: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

INCAR is proposed for editing

Fine-tune the VASP execution flags for your exact purposes

Echoes for questions asked

Page 4: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

optimization constraintsare implemented

This is an easy case because the material is cubic P.Centered cubics, tetragonals etc. are a lot less trivial.

The user is relieved from all this tedium.

Page 5: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The KPOINTS file

Page 6: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The RunJob.bat file for Windows

Page 7: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The PostProc.bat file

Toth utility context

import relaxed structure with

total energy intoJOBreport.out

import stress

Page 8: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Double-click

A DOS window appears.VASP is running.

Start the execution

Page 9: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The DOS window disappears

Execute PostProc.bat: JobReport.out grows by 1 kB

Double-click

JobReport.outgrows by 1kB

Page 10: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

JobReport now contains the optimizedcrystallographic description for pyrite.

Let’s import it.

Select

Depress

Page 11: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Tutorial for Elasticity tool

(1) Select

(2) Depress

Page 12: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Last chance to modifyengine selection.

Type

This is the only elasticity-related info requiredfor a successful elasticity run

If unsure, justclick OK.

You will not getthe fastest nor

the most preciseresults, but acompromise.

Page 13: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

VASP interface dialog is purely about individual optimizations

The k-mesh suggestion and info is implemented in the same way as for ABINIT

For the various options, consult the VASP manual e.g. at: http://cms.mpi.univie.ac.at/vasp/vasp/vasp.html

All the elastic-related data

is processed inthe background

Suggestion was 3x3x3. Increase a bit because pyrite

is not truly an insulator.

Depress

If in doubt,don’t alter.It may not be fast, but

it willget there.

Page 14: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Numerous POSCARXX input data files have been created,one for each distortion

Page 15: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The JOBreport.out file contains data on the distortions used

Page 16: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Double-click on RunJob.batch to start the job

Page 17: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.
Page 18: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Many output files have appeared

Double-click.JOBreportincreasesby 3 kB

Page 19: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Least squares analysis has been run in the background

symmetry constraints on elastic coefficients

least squares analysisof quantum results

Experimental values:Simmons & Birch (1963) C11 381.8 GPa C12 31.0 C44 109.4

Page 20: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

The matrix laid out numerically. Hexagonal

cases may not be astrivial as this one.

Negative diagonal elementswould mean that the phase

is not stable.

equivalent isotropic coefficients

speed of sound

Debye temperature

Bulk, shear, Young’s coefficients etc.. have been extracted.

Page 21: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

copy to clipboard with <CTRL><C>

then transfer toview property screen

Now produce radial plots of elasticity

Page 22: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Paste into the Property dialog

paste

type

Depress

Page 23: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

Radial plot of thesmall shear coefficient

in pyrite

Page 24: Tutorial for Elasticity tool (1) Select (2) Depress For speed, an elastic calculation should be preceded by a careful optimization of atom coordinates.

End of Elasticity tutorial