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S23HH18 Pakistan 2010 1
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akis
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496
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hina 1998 1
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epal 2010 R1
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akis
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akis
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-CDC C
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epal 2003 R
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J941 Vibrio cholerae V
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akis
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akis
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akis
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ahrai
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2013 1344 PR
J941 Vibrio cholerae V
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1575
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epal 2010 R1
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2015
469
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akis
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468
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xxE 2010
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akis
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U2015 481 P
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akis
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ades
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akistan 2010 1
2010EL-1799 Haiti 2010 R1
SF20012 Bangladesh 1969
HC-49A2 Haiti 2010 R1
4646 India 2007 R1
HC-70A1 Haiti 2010 R1
2011EL-2317 Haiti 2011 R1
DTU2013 932 PRJ923 Vibrio cholera 315 4A R1
DTU2013 921 PRJ923 Vibrio cholera 094 13A R1
2015EL-1156 Kenya unkn 1
DT
U20
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88 P
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014
Vib
rio C
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rae
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R 1
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1
2010EL-2010N Haiti 2010
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glad
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2010
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bia 20
04 R
1
GP160 India 1980 1
P27457 Bangladesh 1976
4538 India 2007 R1
S9KCH9 Pakistan 2010 1
7684
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ya 2
009
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2308-CDC China 1978 1
6201
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ya 20
07 R
1
DT
U2015 510 P
RJ1014 V
ibrio Cholerae C
MC
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DTU2013 930 PRJ923 Vibrio cholera 281 8A R1
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RND6878 Russia 2012
DT
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rio C
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io c
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DTU2013 1365 PRJ941 Vibrio cholerae P33 V cholerae El Tor Ogawa R1.trim.fq.sorted
3497-CDC China 1980 1
A397 Bangladesh 1987 1
3014-CDC China 1969 1
VC-5 Nepal 2010 R1
DTU
2015
479
PR
J101
4 V
ibrio
Cho
lera
e C
MC
031
R1
2744-CDC China 1962 1
HC-20A2 Haiti 2010
2011EL-2318 Haiti 2011 R1
HC-47A1 Haiti 2010 R1
2981-CDC China 1965 1
DTU
2013
136
4 PR
J941
Vib
rio c
hole
rae
P25
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oler
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l Tor
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.fq.s
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DTU
2015
504
PR
J101
4 V
ibrio
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lera
e V
SM
716
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A232 Mexico 1991 1
DTU2013 1368 PRJ941 Vibrio cholerae P45 V cholerae El Tor Ogawa R1.trim.fq.sorted
A488S
xx2xxE B
angladesh 2006 R1
HC-43A1 Haiti 2010
DT
U20
15 4
85 P
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014
Vib
rio C
hole
rae
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R 1
20 R
1
A18 India 1977 1
C6706-CDC Peru 1991 1
A186 Argentina 1992 1
2752-CDC China 1981 1
RND19191 Russia 2001
DTU2013 935 PRJ923 Vibrio cholera 342 3A R1
HC-06A1 Haiti 2010 R1
4210-CD
C C
hina 1999 1
G4222 South Africa 2001
2011EL-2316 Haiti 2011 R1
DTU
2015
493
PR
J101
4 V
ibrio
Cho
lera
e B
RH
118
R1
Country
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Afghanistan
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USA
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Russia
Biotype
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Tree scale: 0.01
S23HH18 Pakistan 2010 1
6191
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a 2005 R
1
DTU2013 916 PRJ923 Vibrio cholera 041 A R1
3626-CDC China 1983 1
2015EL-1157 Kenya unkn 1
HC-77A1 Haiti 2010 R1
DT
U20
15 4
87 P
RJ1
014
Vib
rio C
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rae
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R 1
22 R
1
143-CD
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hina 2001 1
F1D
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ista
n 20
10 1
7685
Ken
ya 2
009
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VC-18 Nepal 2
010 R1
1627 Mozam
bique 2005 R1
DTU
2015
499
PR
J101
4 V
ibrio
Cho
lera
e V
SM
657
R1
DT
U20
15 4
91 P
RJ1
014
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rio C
hole
rae
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R 2
87 R
1
3289-CDC China 1978 1
F18K
TH
3 Pakistan 201 0 1
DTU2013 913 PRJ923 Vibrio cholera 004 18A R1
VC-17 Nepal 2010 R1
DTU2016-1979-PRJunkn-Vibrio-cholerae-VC-3 S3 L001 R1 001.trim.fq.sorted
A481
Djib
outi
2007
R1
VC
-6 N
epal
201
0 R
1
DTU2013 936 PRJ923 Vibrio cholera 342 10A R1
1909-CD
C C
hina 1998 1
DTU2013 1366 PRJ941 Vibrio cholerae P36 V cholerae El Tor Ogawa R1.trim.fq.sorted
2015EL-1161 Kenya unkn 1
AHV1003-CDC China 2010 1
3304-CDC China 1979 1
DTU
2015
498
PR
J101
4 V
ibrio
Cho
lera
e V
SM
656
R1
SF20014 Bangladesh 1969
3564-CDC China 1982 1
A131 India 1989 1
VC-21113 N
epal 2003 R
1
2011EL-2314H Haiti 2011 R1
L-3226 Russia 2010
3546-06 India 2006 R1
V109 India 1990 1
4642 India 2006 R1
DTU
2015
509
PR
J101
4 V
ibrio
Cho
lera
e V
SM
721
R1
HC-81A1 Haiti 2010
2011EL-1841 Haiti 2011 R1
A241
Viet
nam
198
9 1
HC-28A1 Haiti 2010 R1
S8K
CH
18 Pakistan 2010 1
6310-CDC Indonesia 1961 1
A245
Vietna
m 1
989
1
HC-67A1 Haiti 2010 R1
2012V-1060 USA FL 2012 R1
DTU2013 1370 PRJ941 Vibrio cholerae P48 V cholerae Ei Tor Ogawa R1.trim.fq.sorted
HC-19A1 Haiti 2010 R1
DTU
2013
135
7 PR
J941
Vib
rio c
hole
rae
P42
V ch
oler
ae E
l Tor
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a R
1.tri
m.fq
.sor
ted
F8D
25 Pakistan 2010 1
HC-57A2 Haiti 2010 R1
DTU
2015
475
PR
J101
4 Vi
brio
Cho
lera
e C
MC
027
R1
A316 Argentina 1993 1
4536 India 2007 R1
S17
HH
3 P
akis
tan
2010
1
4784
Tanz
ania
2009
R1
DTU
2013
135
9 PR
J941
Vib
rio c
hole
rae
P44
V ch
oler
ae E
l Tor
Inab
a R
1.tri
m.fq
.sor
ted
DTU2013 929 PRJ923 Vibrio cholera 278 8A R1
C6706 Peru 1991
HC-80A1 Haiti 2010 R1
6193 Kenya
2005 R1
2009V-1096 USA SxxIndiaxxE
2009
M66-2 Indonesia 1937
DTU
2015
496
PR
J101
4 V
ibrio
Cho
lera
e B
RH
121
A R
1
V5 India 1989 1
DTU
2013 1347 PR
J941 Vibrio cholerae V
cholerae El Tor O
gawa 22127 R
1.trim.fq.sorted
VC-21 Nepal 2010 R1
A185 Colombia 1992 1
936-CD
C C
hina 1998 1
DTU
2015
503
PR
J101
4 V
ibrio
Cho
lera
e V
SM
661
R1
2010EL-2026 Haiti 2010 R1
2011EL-1818 Haiti 2011 R1
2894-CDC China 1961 1
3024-CDC China 1973 1
DTU
2014
105
5 PR
J941
Vib
rio c
hole
rae
4053
0243
03 R
1.tri
m.fq
.sor
ted
GP152 India 1979 1
VC-12 N
epal 2010 R1
F4D
48 P
akis
tan
2010
1
4070-CD
C C
hina 1994 1
DTU
2015
471
PR
J101
4 Vi
brio
Cho
lera
e C
MC
023
R1
DT
U2015 515 P
RJ1014 V
ibrio Cholerae G
MH
032 R1
A6 Indonesia 1957 1
4039-CD
C C
hina 1993 1
2011EL-2315 Haiti 2011 R1
DTU
2015
477
PR
J101
4 Vi
brio
Cho
lera
e C
MC
029
R1
2010EL-1787 Haiti 2010 R1
1346 Mozam
bique 2005 R1
DTU2013 938 PRJ923 Vibrio cholera 355 1A R1
VC
-19
Nep
al 2
010
R1
A32 Peru 1991 1
SF20015 Bangladesh 1969 2011EL-2323 Haiti 2011 R1
V212-1 India 1991 1
KS72
0 Ba
ngla
desh
201
1 R
1
F5D
38 P
akis
tan
2010
1
3633-CDC China 1984 1
956-CD
C C
hina 2001 1
2710
-CDC C
hina
1986
1
A200 Argentina 1992 1
NH
CC
-010
F B
angl
ades
h 20
10 R
1
2012EL-2176 Haiti 2012
2010EL-1795 Haiti 2010 R1
4322 India 2004 R1
MJ1485 Bangladesh 1994 1
VC-21106 N
epal 2003 R
1
H1 Haiti 2010
DTU
2013 1348 PR
J941 Vibrio cholerae V
cholerae El Tor O
gawa 22128 R
1.trim.fq.sorted
642345-CDC China 1964 1
VC-7 Nepal 2010 R1
DT
U20
15 5
13 P
RJ1
014
Vib
rio C
hole
rae
GM
H 0
19 R
1
2011V-1021 Dominican Republic 2011
DTU
2015
465
PR
J101
4 Vi
brio
Cho
lera
e C
MC
017
R1
DTU2013 939 PRJ923 Vibrio cholera 322 3E R1
F7D
30 P
akis
tan
2010
1
RND19187 Russia 2010
2011
EL-
1938
Indi
a 20
09 R
1
S12
P76
Pak
ista
n 20
10 1
HC-48B2 Haiti 2010 R1
S21H
H15 P
akistan 2010 1
2574-CDC China 1980 1
DTU2013 1361 PRJ941 Vibrio cholerae P1 V cholerae El tor Ogawa R1.trim.fq.sorted
F16K
TH6
Pak
ista
n 20
10 1
4585 India 2007 R1
6215
Ken
ya 20
05 R
1
2012EL-1410 Haiti 2012 R1
F17K
TH4
Pak
ista
n 20
10 1
S19
HH
5 P
akis
tan
2010
1
VC51 India 1992 1
F2D
59 P
akis
tan
2010
1
S1K
CH
15 Pakistan 2010 1
S10P
57 Pakistan 2010 1
DTU2016-1930-PRJunkn-Vibrio-cholerae-VC-2 S2 L001 R1 001.trim.fq.sorted
VC-20 Nepal 2010 R1
7686
Ken
ya 2
009
R1
VC-2 Nepal 2010 R1
VC-14 Nepal 2010 R1
2010EL-1796 Haiti 2010 R1
GP140 Malaysi
a 1978 1
2010EL-1961 Haiti 2010
SF20013 Bangladesh 1969
HC-48A1 Haiti 2010 R1
4551 India 2007 R1
V011506-C
DC
China 2001 1
147-CD
C C
hina 2002 1
DT
U20
15 4
89 P
RJ1
014
Vib
rio C
hole
rae
EV
R 2
84 R
1
4656 India 2006 R1
A180 Colombia 1992 1
A488S
xx1xxE B
angladesh 2006 R1
HC-61A1 Haiti 2010 R1
2833-CDC China 1979 1
CIR
S 1
01 B
angl
ades
h 20
02
HC-39A1 Haiti 2010 R1
DTU2013 914 PRJ923 Vibrio cholera 011 17A R1
2010EL-1791 Haiti 2010 R1
DTU2013 920 PRJ923 Vibrio cholera 089 10A R1
6194
Ken
ya 20
07 R
1
A27 Peru 1991 1
2580-CDC China 1989 1
DTU2014 1053 PRJ941 Vibrio cholerae 4053022989 R1.trim.fq.sorted
2011EL-1137 S
outh Africa 2009 R
1
A201 Argentina 1992 1
GP60 In
dia 19
73 1
DTU
2013 1342 PR
J941 Vibrio cholerae V
cholerae El Tor Inaba 22116 R
1.trim.fq.sorted
T21-
CDC Tha
iland
199
0 1
2657-CD
C C
hina 1995 1
2011EL-2322 Haiti 2011 R1
S16H
H1 P
akistan 2010 1
DTU2014 1057 PRJ941 Vibrio cholerae 4053024306 R1.trim.fq.sorted
MB
RN
14 India 2004 R1
HC-23A1 Haiti 2010 R1
VC-15 Nepal 2
010 R1
2011EL-1300 Haiti 2011 R1
DTU2013
133
4 PRJ9
41 V
ibrio
chole
rae
349
264
R1.tri
m.fq
.sorte
d
4663 Bangladesh 2001 R1
VC-3 N
epal 2010 R1
2881-CDC China 1961 1
DTU
2015
-837
-PR
J101
4-Vi
brio
-cho
lera
e-13
ARSC
MC
-018
-706
S2
L001
R1
001.
fast
q.so
rted
DTU
2015
472
PR
J101
4 Vi
brio
Cho
lera
e C
MC
024
R1
2011EL-1089 Haiti 2010
GP143 B
ahrain 197
8 1
200106-CD
C C
hina 2001 1
DTU2013 1363 PRJ941 Vibrio cholerae P17 V cholerae El Tor Ogawa R1.trim.fq.sorted
S5KCH10 Pakistan 2010 1
2757
-CDC C
hina
198
7 1
DTU
2015
497
PR
J101
4 V
ibrio
Cho
lera
e B
RH
121
B R
1
HC-32A1 Haiti 2010 R1
DTU
2015 484 PR
J1014 Vibrio C
holerae EV
R 004 R
12530-C
DC
China 1996 1
4488 India 2006 R1
2921-CDC China 1962 1
F15K
TH7
Pak
ista
n 20
10 1
DTU
2015
500
PR
J101
4 V
ibrio
Cho
lera
e V
SM
658
R1
2009V-1085 USA SxxSri L
ankaxxESxxI
ndiaxxE 2009
VC-25 Nepal 2010 R1
2010EL-1786 Haiti 2010 R1
PC
S-0
23 B
angl
ades
h 20
10 R
1
7687
Ken
ya 2
009
R1
A177 Colombia 1992 1
63244-CDC China 1963 1
DT
U20
15 4
90 P
RJ1
014
Vib
rio C
hole
rae
EV
R 2
85 R
1
HCUF01 Haiti 2010 R1
S4KCH16 Pakistan 2010 1
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DTU
2013
135
6 PR
J941
Vib
rio c
hole
rae
P39
V ch
oler
ae E
l Tor
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a R
1.tri
m.fq
.sor
ted
HC-33A2 Haiti 2010 R1
2010EL-1788 Haiti 2010 R1
6312-CDC Indonesia 1961 12015EL-1160 Kenya unkn 1
S6KCH7 Pakistan 2010 1
DTU2
013
1353
PRJ
941
Vibr
io c
hole
rae
P35
V ch
oler
ae E
l Tor
Inab
a R
1.tri
m.fq
.sor
ted
3500-05 India 2005 R1
A482
Djib
outi
2007
R1
DTU2013 925 PRJ923 Vibrio cholera 196 6A R1
DTU
2013 1344 PR
J941 Vibrio cholerae V
cholerae El Tor Inaba 22118 R
1.trim.fq.sorted
A346 2 Bangladesh 1994 1
2011
EL-
1939
Indi
a 20
09 R
1
SC2000-C
DC
China 2000 1
2010EL-1801 Haiti 2010 R1
HC-38A1 Haiti 2010 R1
1575
-CDC
Chi
na 1
990
1
VC-10 N
epal 2010 R1
DTU
2015
469
PR
J101
4 Vi
brio
Cho
lera
e C
MC
021
R1
MB
N17 India 2004 R
1 F12D
1 P
akis
tan
2010
1
DTU
2015
468
PR
J101
4 Vi
brio
Cho
lera
e C
MC
020
R1
A487Sxx1xxE Bangladesh 2007 R1
CP1042 Thailand 2010 R1
GP145 India 1979 1
3582-05 Pakistan 2005 R
12010EL-2010H Haiti 2010
SC1998 242-1-C
DC
China 1998 1
DTU
2015
473
PR
J101
4 Vi
brio
Cho
lera
e C
MC
025
R1
DTU2
013
1352
PRJ
941
Vibr
io c
hole
rae
P34
V ch
oler
ae E
l Tor
Inab
a R
1.tri
m.fq
.sor
ted
4111 Vietnam
2002 R1
6210
Ken
ya 20
07 R
1
2015EL-1162 Kenya unkn 1
DTU2013
1335
PRJ9
41 V
ibrio
chole
rae 5
10 77
R1.t
rim.fq
.sorte
d
VC-26 Nepal 2010 R1
2848
-CDC
Chi
na 1
988
1
2010EL-1749 Cameroon SxxAfrica W
xxE 2010
S25
R22
Pak
ista
n 20
10 1
F11D
4 P
akis
tan
2010
1
S20H
H14 P
akistan 2010 1
2914-CDC China 1966 1
2015EL-1159 Kenya unkn 1
DT
U2015 481 P
RJ1014 V
ibrio Cholerae E
VR
001 R1
HC-7A1 Haiti 2010
S13P
83 Pakistan 2010 1
DTU
2015
508
PR
J101
4 V
ibrio
Cho
lera
e V
SM
720
R1
3554-08 US
A SxxN
epalxxE 2008 20
09V-
1046
US
A S
xxP
akis
tanx
xE 2
009
2873-CDC China 1961 1
1283-CDC China 1984 1
S2KCH17 Pakistan 2010 1
DTU
2015
480
PR
J101
4 Vi
brio
Cho
lera
e C
MC
032
R1
DTU
2013
135
8 PR
J941
Vib
rio c
hole
rae
P43
V ch
oler
ae E
l Tor
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a R
1.tri
m.fq
.sor
ted
DTU2013 924 PRJ923 Vibrio cholera 151 4A R1
4605 India 2007 R1
VC-11 N
epal 2010 R1
DTU
2015
470
PR
J101
4 Vi
brio
Cho
lera
e C
MC
022
R1
2009V-1131 USA SxxIndiaxxE 2009
2957-CDC China 1964 1
G7555 Bangladesh 1969
DTU2013 926 PRJ923 Vibrio cholera 238 5A R1
HC-71A1 Haiti 2010 R1
2009
V-1
116
US
A S
xxP
akis
tanx
xE 2
009
129-CD
C C
hina 1994 1
S18
HH
4 P
akis
tan
2010
1
2010EL-1798 Haiti 2010
4675
Ban
glad
esh
2001
R1
DTU
2015
505
PR
J101
4 V
ibrio
Cho
lera
e V
SM
717
R1
A19 B
angla
desh
1971
1
HC-65A1 Haiti 2010 R1
A130 India 1989 1
DTU
2015
502
PR
J101
4 V
ibrio
Cho
lera
e V
SM
660
R1
DTU2013 927 PRJ923 Vibrio cholera 278 1A R1
6311-CDC Indonesia 1961 1
HC-64A1 Haiti 2010 R1
DTU
2015
507
PR
J101
4 V
ibrio
Cho
lera
e V
SM
719
R1
2011EL-2321 Haiti 2011 R1
2783-CDC China 1964 1
HC-40A1 Haiti 2010 R1
132-CDC China 1978 1
4110 Vietnam
1995 1
DTU
2015
474
PR
J101
4 Vi
brio
Cho
lera
e C
MC
026
R1
A31 Peru 1991 1
MG
1160
25 B
angl
ades
h 19
91 1
DTU
2015
-846
-PR
J101
4-Vi
brio
-cho
lera
e-13
ARSC
MC
-028
-738
S7
L001
R1
001.
fast
q.so
rted
3270-CDC C
hina 1977 1
DTU
2013
135
1 PR
J941
Vib
rio c
hole
rae
P30
V c
hole
rae
El T
or In
aba
R1.
trim
.fq.s
orte
d
SF20017 Bangladesh 1976
A193 Bolivia 1992 1
A231 Mexico 1991 1
VC-16 N
epal 2010 R1
3595-CDC China 1983 1
863-CDC Mauritania 1986 1
DTU20
13 1
339
PRJ941
Vibr
io ch
olera
e 18
4 AD11
2 R1.
trim
.fq.so
rted
HC-22A1 Haiti 2010 R1
4593 India 2007 R1
CP
1038 Zimbabw
e 2009 R1
1551-CDC China 1979 1
4623 India 2007 R1
2011EL-2319 Haiti 2011 R1
4552 India 2007 R1
S7KCH20 Pakistan 2010 1
DTU
2015
492
PR
J101
4 V
ibrio
Cho
lera
e B
RH
117
R1 4113 V
ietnam 2003 R
1
DTU
2015
501
PR
J101
4 V
ibrio
Cho
lera
e V
SM
659
R1
DT
U2015 511 P
RJ1014 V
ibrio Cholerae C
MC
090 R1
DTU
2014
105
6 PR
J941
Vib
rio c
hole
rae
4053
0237
24 R
1.tri
m.fq
.sor
ted
A483
Djib
outi
2007
R1
3538-CDC China 1981 1
1944-CD
C C
hina 2000 1
PRL5
Indi
a 19
80 1
1605-CD
C C
hina 1993 1
2012V-1001 USA 2011 R1
DTU2016-1929-PRJunkn-Vibrio-cholerae-VC-1 S1 L001 R1 001.trim.fq.sorted
2605-CD
C C
hina 1998 1
2011EL-1941 India 2010 R1
DT
U2015 482 P
RJ1014 V
ibrio Cholerae E
VR
002 R1
S22H
H17 P
akistan 2010 1
F19KTH
2 Pakistan 2010 1
HC-21A1 Haiti 2010 R1
CP
1048
Ban
glad
esh
2010
R1
DTU2013
1336
PRJ9
41 V
ibrio
chole
rae 4
76 16
7 R1.t
rim.fq
.sorte
d
DTU2013 922 PRJ923 Vibrio cholera 139 7A R1
2255-CDC China 2008 1
NH
CC
-006
C B
angl
ades
h 20
10 R
1
DTU2013 1369 PRJ941 Vibrio cholerae P47 V cholerae El Tor Ogawa R1.trim.fq.sorted
DT
U2015 512 P
RJ1014 V
ibrio Cholerae C
MC
091 R1
3735-CDC China 1988 1
2011EL-2320 Haiti 2011 R1
V01-CDC Chile 1991 1
DTU
2015
-847
-PR
J101
4-V
ibrio
-cho
lera
e-13
AR
SC
MC
-030
-757
S8
L001
R1
001.
fast
q.so
rted 93284-C
DC
China 1993 1
VC-9 Nepal 2010 R1
CP1040
Zam
bia 20
04 R
1
4339 India 2004 R1
IDH
O1
726
Indi
a 20
09 R
1
DT
U2015 483 P
RJ1014 V
ibrio Cholerae E
VR
003 R1
DT
U2015 516 P
RJ1014 V
ibrio Cholerae G
MH
033 R1
HFU-02 Haiti 2010 R1
1627-CD
C C
hina 1997 1
DTU
2015
506
PR
J101
4 V
ibrio
Cho
lera
e V
SM
718
R1
D118-CDC China 1961 1
DTU2013 933 PRJ923 Vibrio cholera 330 2A R1
DTU
2013 1341 PR
J941 Vibrio cholerae V
cholerae El Tor Inaba 22115 R
1.trim.fq.sorted
VC-4 N
epal 2010 R1
7682
Ken
ya 2
009
R1
A184 Colombia 1992 1
SF20016 Bangladesh 1976
1593
-CDC C
hina
199
2 1
GD196110-CDC China 1961 1
DTU2013 919 PRJ923 Vibrio cholera 068 9A R1
4679
Ban
glad
esh
1999
1
S27R
G11 P
akistan 2010 1
VC22
48-1
-CD
C C
hina
200
8 1
2010EL-1792 Haiti 2010
PR
L64 India 1992 1
HC-68A1 Haiti 2010 R1
DTU
2013 1346 PR
J941 Vibrio cholerae V
cholerae El Tor O
gawa 22126 R
1.trim.fq.sorted
DTU
2013
135
4 PR
J941
Vib
rio c
hole
rae
P37
V ch
oler
ae E
l Tor
Inab
a R
1.tri
m.fq
.sor
ted
4121 Vietnam
2004 R1
VC-13 N
epal 2010 R1
HC-41A1 Haiti 2010 R1
DTU2013
1338
PRJ9
41 V
ibrio
chole
rae 5
01 77
1 R1.t
rim.fq
.sorte
d
A22 Bangladesh 1979 1
DTU
2015
467
PR
J101
4 Vi
brio
Cho
lera
e C
MC
019
R1
DTU2013 915 PRJ923 Vibrio cholera 021 5A R1
DTU2013 923 PRJ923 Vibrio cholera 150 7A R1
DTU
2015
495
PR
J101
4 V
ibrio
Cho
lera
e B
RH
120
R1
HC-42A1 Haiti 2010 R1
2015EL-1158 Kenya unkn 1
A346 1 Bangladesh 1994 1
9-CD
C C
hina 2001 1
HC-46A1 Haiti 2010 R1
4672 Bangladesh 2000 R1
3075-CDC China 1974 1
S26
R24
Pak
ista
n 20
10 1
A10
Bang
lade
sh 1
979
1
DTU2013 1360 PRJ941 Vibrio cholerae P46 V cholerae El Tor Inaba R1.trim.fq.sorted
DTU2013 918 PRJ923 Vibrio cholera 066 13A R1
DTU2013
1337
PRJ9
41 V
ibrio
chole
rae 8
16 ct
634 R
1.trim
.fq.so
rted
DT
U20
15 4
86 P
RJ1
014
Vib
rio C
hole
rae
EV
R 1
21 R
1
A29 Peru 1991 1
1583
-CDC
Chi
na 1
991
1D
TU2013 1345 P
RJ941 V
ibrio cholerae V cholerae E
l Tor Ogaw
a 22125 R1.trim
.fq.sorted
2865-CDC China 1961 1
DTU2013 1362 PRJ941 Vibrio cholerae P8 V cholerae El Tor Ogawa R1.trim.fq.sorted
MJ1236 Bangladesh 1994
SF20011 Bangladesh 1969
VC-22 Nepal 2010 R1
1362 Mozam
bique 2005 R1
DTU2013 917 PRJ923 Vibrio cholera 063 9A R1
2011
EL-
1141
Afg
hani
stan
200
8 R
1
NH
CC
-004
A B
angl
ades
h 20
10 R
1
X190-CDC Peru 1991 1
S24R
G6 P
akistan 2010 1
2010EL-1799 Haiti 2010 R1
SF20012 Bangladesh 1969
HC-49A2 Haiti 2010 R1
4646 India 2007 R1
HC-70A1 Haiti 2010 R1
2011EL-2317 Haiti 2011 R1
DTU2013 932 PRJ923 Vibrio cholera 315 4A R1
DTU2013 921 PRJ923 Vibrio cholera 094 13A R1
2015EL-1156 Kenya unkn 1
DT
U20
15 4
88 P
RJ1
014
Vib
rio C
hole
rae
EV
R 1
23 R
1
2010EL-2010N Haiti 2010
CP
1050
Ban
glad
esh
2010
R1
CP1041
Zam
bia 20
04 R
1
GP160 India 1980 1
P27457 Bangladesh 1976
4538 India 2007 R1
S9KCH9 Pakistan 2010 1
7684
Ken
ya 2
009
R1
2308-CDC China 1978 1
6201
Ken
ya 20
07 R
1
DT
U2015 510 P
RJ1014 V
ibrio Cholerae C
MC
089 R1
DTU2013 930 PRJ923 Vibrio cholera 281 8A R1
DTU20
13 1
375
PRJ9
41 V
ibrio
cho
lera
e VC
O1
9 R1.
trim
.fq.s
orte
d
DTU2013 931 PRJ923 Vibrio cholera 285 11A R1
RND6878 Russia 2012
DT
U20
15 5
14 P
RJ1
014
Vib
rio C
hole
rae
GM
H 0
31 R
1
DTU2
013
1355
PRJ
941
Vibr
io c
hole
rae
P38
V ch
oler
ae E
l Tor
Inab
a R1
.trim
.fq.s
orte
d
DTU2013 1365 PRJ941 Vibrio cholerae P33 V cholerae El Tor Ogawa R1.trim.fq.sorted
3497-CDC China 1980 1
A397 Bangladesh 1987 1
3014-CDC China 1969 1
VC-5 Nepal 2010 R1
DTU
2015
479
PR
J101
4 V
ibrio
Cho
lera
e C
MC
031
R1
2744-CDC China 1962 1
HC-20A2 Haiti 2010
2011EL-2318 Haiti 2011 R1
HC-47A1 Haiti 2010 R1
2981-CDC China 1965 1
DTU
2013
136
4 PR
J941
Vib
rio c
hole
rae
P25
V ch
oler
ae E
l Tor
Oga
wa
R1.
trim
.fq.s
orte
d
DTU
2015
504
PR
J101
4 V
ibrio
Cho
lera
e V
SM
716
R1
A232 Mexico 1991 1
DTU2013 1368 PRJ941 Vibrio cholerae P45 V cholerae El Tor Ogawa R1.trim.fq.sorted
A488S
xx2xxE B
angladesh 2006 R1
HC-43A1 Haiti 2010
DT
U20
15 4
85 P
RJ1
014
Vib
rio C
hole
rae
EV
R 1
20 R
1
A18 India 1977 1
C6706-CDC Peru 1991 1
A186 Argentina 1992 1
2752-CDC China 1981 1
RND19191 Russia 2001
DTU2013 935 PRJ923 Vibrio cholera 342 3A R1
HC-06A1 Haiti 2010 R1
4210-CD
C C
hina 1999 1
G4222 South Africa 2001
2011EL-2316 Haiti 2011 R1
DTU
2015
493
PR
J101
4 V
ibrio
Cho
lera
e B
RH
118
R1
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