kaitlin thaney SciPy, 13 july 2011 austin, texas the reality of ‘digital science’ Wednesday, 13 July 2011
"The Reality of Digital Science"
May 13, 2015
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kaitlin thaneySciPy, 13 july 2011
austin, texas
the reality of ‘digital science’
Wednesday, 13 July 2011
xi. background
Wednesday, 13 July 2011
about me
Wednesday, 13 July 2011
Digital Science(the company)
Wednesday, 13 July 2011
investment armincubator rolein-house dev
Wednesday, 13 July 2011
tiered approachbuild to scale
researcher-focused
Wednesday, 13 July 2011
1. science, tech, and moving online
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research
idea
experiment
lit review discovery
materials
publish
share results
retestanalyze
collect data
Wednesday, 13 July 2011
blocking points
idea
experiment
lit review discovery
materials
publish
share results
retestanalyze
collect data
(to name a few ... )
Wednesday, 13 July 2011
access
analysis
disseminationWednesday, 13 July 2011
text texttext
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discovery & delivery
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changes at the workbench
Wednesday, 13 July 2011
annotation & curation
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social & administrative
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gaps still exist
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2. key constituencies
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(3)
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machines
researchers
decision makers
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machines
researchers
decision makers
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...annotation
markupsearch
discovery“behind the
scenes”...
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[brief interlude]
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digitisation of the scholarly canon
(content is still king)
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not nearly there yet ...
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barriers to “access”
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still the starting point
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patents are no better(in many cases, worse)
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can streamline
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name disambiguation
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10,11-dihydro-5-methyl-5H-dibenzo[b,e][1,4]diazepin-11-one
(still strains the minds of the best)
Wednesday, 13 July 2011
machine readability is key.
agreement is hard.
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10,11-dihydro-5-methyl-5H-dibenzo[b,e][1,4]diazepin-11-one
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“everything is metadata ...
everything can be a label.”
- david weinberger
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machines
researchers
decision makers
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a few edge cases (though no field is perfect)
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CC-BY-2.0 - Plaxco Lab - http://www.flickr.com/photos/34857812@N04/
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trackingexpiration calibration
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the non-digital
+ordering
processing
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protocols parameterscalibration
misc. lit
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managing information
different types of “data”
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often gigabytes, not terabytes
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“i invented a folder based system ...”
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“i invented a folder based system ...”
“yeah, we had a LIMS. it only ever got used to store photos
from lab nights out.”
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why?
experimentation reliance
data moves, grows legs
funder/instit’n pressure
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machines
researchers
decision makers
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rewards, incentives the “ why ”
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data capture(of a different sort)
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the “social issue”best practices
behaviour roadblocksdiscipline / researcher specific
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paper’s still the currency
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imperfect system
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“Right now we're going through a Cambrian explosion of metrics.”
- Johan Bollen
Nature 465, 864-866 (2010) | doi:10.1038/465864a
Wednesday, 13 July 2011
there’s been a drastic spike in terms of sheer volume and type
Wednesday, 13 July 2011
citation / impact factorh - index
weighted citations (eigenfactor, sjr)“betweenness centrality”
alt-metrics, etc.
Wednesday, 13 July 2011
difficult to ... harmonise
track /maintain / mapunderstand
(even still measure)
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administrators / funders =
part of the research cycle
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3. the reality
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“the future is here ... just not evenly
distributed yet.”- William Gibson
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changing understandings,
paradigms
Wednesday, 13 July 2011
technology can helpdesign decisions are key
plan for the irrational
Wednesday, 13 July 2011
more efficient researchincrease productivityenable reproducibility
Wednesday, 13 July 2011
thank you.
@kaythaney
Wednesday, 13 July 2011
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