The Future Publication of Software

European Geosciences UnionGeneral Assembly 2015

Vienna | Austria | 12 – 17 April 2015

SC24 Open Science goes Geo – Part II: Scientific Software

Martin Hammitzsch, Helmholtz Centre Potsdam, GFZ German Research Centre for Geosciences

Future Publication of Softwareor the GitHub of Science

sciforge

Challenges

EGU GA 2015, SC24 Open Science goes Geo – Part II: Scientific Software, Martin Hammitzsch

sciforge

revie

wreproducibility

software-specific

versioningmeasuringproductivitysubject-specific

arch

ivingexecutables

competencies

trac

eability

interdisciplinarity

ecosystemdocumentation

impa

ct

reputation

reusabilityquality

sour

ce c

odemetrics

recognition

...

skills

value

identifiers

★ Software journals using individual policies for software related papers;

★ Digital Repositories minting DOIs for source code copies and software release packages;

★ Foundations and companies providing environment for FOSS projects;

★ Institutes offering software/code repositories and digital repositories for research results.

State of the Art


sciforge

Software

Descriptor / Paper


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

refers / links to

research data

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

or / and ?

refers / links to

Data Descriptor /

Paper

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

or / and ?

refers / links to

Data Descriptor /

Paper

refers /

links to

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review

digital

repository

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review DOI

digital

repository

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review DOI

digital

repository

digital repository

DOI

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review DOI

digital

repository

digital repository

DOI

digital repository

DOI

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review DOI

digital

repository

digital repository

DOI

digital repository

DOI

DOI

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Review DOI

digital

repository

digital repository

DOI

digital

repository

Review

DOI digital repository

DOI

DOI

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode

Software Releasefor Publication

refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

packe

d in

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers /

links to

packe

d in

complem

ents

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

complements

refers /

links to

packe

d in

complem

ents

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

refers /

links to

packe

d in

complem

ents

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

refers /

links to

packe

d in

complements

complem

ents

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

refers /

links to

packe

d in

complements- user guide - installation guide - developer guide

complem

ents

Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

packe

d in

complem

ents

/ API

doc


Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

packe

d in

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository

Review


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository

Review


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository

Review

Git-based → Git != GitHub *


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository

Review

Git-based → Git != GitHub *


sciforge

* Git - distributed revision control system with an emphasis ondata integrity, and support for distributed, non-linear workflows; GitHub - web-based Git repository hosting service, which offers all of the distributed revision control and source code management functionality of Git as well as adding its own features ... it provides access control and collaboration features such as wikis, task management, and bug tracking and feature requests. -- wikipedia

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /

Code Repository+ landing page

Review


sciforge

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


Review


sciforge

+ features

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


Review


sciforge

+ features+ DOI system interop

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


Review


sciforge

+ DOI system interop

+ features

DOI

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


ReviewDOI


sciforge


+ featuresScientist’s Workplace fork, clone

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


ReviewDOI


sciforge


+ featuresScientist’s Workplacepush

, pull,

su

bmitfork, clone

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


ReviewDOI


sciforge


+ featuresScientist’s WorkplaceArchive fork,

push, pul

l,

su

bmitfork, cloneclone

Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


ReviewDOI


sciforge


+ features = GitHub

of Science?Scientist’s Workplace

Archive fork,

push, pul

l,

su


Software

Descriptor / Paper

SourceCode


refers / links to

stored / lives in

research data

metadata

acco

mpa

nied

by

or / and ?

refers / links to

test data

Data Descriptor /

Paper or / and ?

refers / links to

complements

complementsrefers /

links to

complementspa

cked i

n

managedin

binariescomp

lementscom

plements

/ API

doc


Software /


ReviewDOI


sciforge


+ features = GitHub

of Science?

= Concept, Platform

,

Implementatio

n

by jou

rnals?

Scientist’s WorkplaceArchive fork,

push, pul

l,

su


Approach


sciforge

Approach


sciforge

establishe

d

publishin

g

proce

sses

proven software engineering practices

Approach


sciforge

Merge,

Test, and

Evaluate

establishe

d

publishin

g

proce

sses


Approach


sciforge

Merge,

Test, and

Evaluate

establishe

d

publishin

g

proce

sses


skills

policies

infrastructu

res

and platfo

rms

The Future Publication of Software

Science

2015sc24 open science

artegu ga

source code copies

softwarecode repositories

gfz german research

research results

helmholtz centre potsdam

individual policies