COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE SPONGES IN NORTHERN AUSTRALIA Technical Reports of the Queensland Museum Technical Reports of the Queensland Museum No. 002 Authors: John N.A. Hooper & Merrick Ekins Address: Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected]) Report written for: National Oceans Office C2004/020 (2004) PART 2 OF 8 This document may be cited as: Hooper, J.N.A. & Ekins, M. 2004 (published online 2009). Collation and validation of museum collection databases related to the distribution of marine sponges in northern Australia. Technical Reports of the Queensland Museum Number 002. pp 1-224. www.qm.qld.gov.au (ISBN 978-0-9805692-5-4) Copyright for this document is with the Queensland Museum and the National Oceans Office (now incorporated within the Marine Division of the Department of Environment, Water, Hertiage and the Arts [DEWHA]). Technical reports of the Queensland Museum are published online, in read-only format, and are individually catalogued by the National Library of Australia. These reports may include reproductions (or revisions) of documents that were originally compiled to advise industry, government or academia on specific scientific issues, and they are reproduced here to ensure that the scientific and technical data they contain are not lost within the vast unpublished scientific ‘grey literature’. For further information please contact: Managing Editor, Memoirs of the Queensland Museum Queensland Museum, PO Box 3300, South Brisbane 4101, Qld Australia Phone 61 7 3840 7555. Fax 61 7 3846 1226. www.qm.qld.gov.au Email [email protected]
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COLLATION AND VALIDATION OF MUSEUM COLLECTION DATABASES RELATED TO THE DISTRIBUTION OF MARINE
SPONGES IN NORTHERN AUSTRALIA
Technical Reports of the Queensland MuseumTechnical Reports of the Queensland MuseumNo. 002
Authors: John N.A. Hooper & Merrick EkinsAddress: Queensland Museum, PO Box 3300, South Brisbane, Queensland, 4101, Australia ([email protected], [email protected])Report written for: National Oceans Office C2004/020 (2004)
PART 2 OF 8
This document may be cited as:
Hooper, J.N.A. & Ekins, M. 2004 (published online 2009). Collation and validation of museum collection databases related to the distribution of marine sponges in northern Australia. Technical Reports of the Queensland Museum Number 002. pp 1-224. www.qm.qld.gov.au (ISBN 978-0-9805692-5-4)
Copyright for this document is with the Queensland Museum and the National Oceans Office (now incorporated within the Marine Division of the Department of Environment, Water, Hertiage and the Arts [DEWHA]).
Technical reports of the Queensland Museum are published online, in read-only format, and are individually catalogued by the National Library of Australia. These reports may include reproductions (or revisions) of documents that were originally compiled to advise industry, government or academia on specific scientific issues, and they are reproduced here to ensure that the scientific and technical data they contain are not lost within the vast unpublished scientific ‘grey literature’.
For further information please contact:
Managing Editor, Memoirs of the Queensland Museum Queensland Museum, PO Box 3300, South Brisbane 4101, Qld Australia Phone 61 7 3840 7555. Fax 61 7 3846 1226. www.qm.qld.gov.au Email [email protected]
APPENdiX 1. list of sponge species chosen as a subset of the entire sponge database
as surrogates for the present analysis, representing a collaborative study between Australian sponge collection and research institutions (QM, AIMS, MAgNT, WAM). Refer to Appendix 7 for PdF file of CAAb modelled species distributions for each of these surrogate species.
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
77
APPENdiX 2.A.
Similarities between larger scale (ε-scale diversity) IMCRA bioregions, indicating pairwise comparisons in the number of species co-occurring in both bioregion (upper part of matrix), the total number of species co-occurring in both bioregion (diagonal, bold font), and percentage of species co-occurring in both bioregion (lower part of matrix).
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
79
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APPENDIX 3. Jaccard Similarity index (%) for pairwise comparisons between small scale (γ-scale diversity) localities sampled for sponges in northern Australia (including temperate transitional zones)
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
81
Spec
iesN
ame
CEb
NEP
NEb
E.N
PW
.NP
NW
bN
WP
CW
bC
WP
To
ta
l bi
oreg
ions
Cla
thria
(Tha
lysi
as) v
ulpi
na (L
amar
ck, 1
814)
11
11
11
11
19
Ech
inod
icty
um m
esen
terin
um (L
amar
ck, 1
814)
11
11
11
10
18
Sph
ecio
spon
gia
papi
llosa
(Rid
ley
& D
endy
, 188
6)1
11
10
11
11
8A
cant
hella
cav
erno
sa D
endy
, 192
21
11
11
11
00
7C
inac
hyre
lla a
ustra
liens
is (C
arte
r, 18
86)
11
11
11
10
07
Dys
idea
cf.a
vara
(Sch
mid
t, 18
62)
11
11
11
10
07
Ech
inod
icty
um a
sper
um (R
idle
y &
Den
dy, 1
886)
10
11
11
11
07
Hig
gins
ia m
ixta
(Hen
tsch
el, 1
912)
11
11
11
10
07
Hya
ttella
inte
stin
alis
(Lam
arck
, 181
4)1
01
11
11
01
7Ia
nthe
lla b
asta
(Pal
las,
177
6)1
11
11
11
00
7Ia
nthe
lla c
f.fla
belli
form
is (P
alla
s, 1
776)
11
11
11
10
07
Iant
hella
flab
ellif
orm
is (P
alla
s, 1
776)
11
11
11
10
07
Iotro
chot
a ba
culif
era
Rid
ley,
188
41
11
11
11
00
7Irc
inia
11
11
01
11
01
7Irc
inia
125
51
11
11
11
00
7M
yrm
ekio
derm
a gr
anul
ata
(Esp
er, 1
830)
11
11
11
10
07
Oce
anap
ia 1
351
01
11
11
01
7R
habd
astre
lla g
lobo
stel
lata
(Car
ter,
1883
)1
11
11
11
00
7X
esto
spon
gia
test
udin
aria
(Lam
arck
, 181
3)1
11
11
11
00
7A
gela
s ax
ifera
Hen
tsch
el, 1
911
11
10
01
10
16
Aka
muc
osa
(Ber
gqui
st, 1
965)
01
11
11
10
06
Apl
ysin
a ia
nthe
llifo
rmis
(Len
denf
eld,
188
8)1
11
01
01
01
6C
ally
spon
gia
(Tox
ocha
lina)
sch
ulze
i Kie
schn
ick,
190
01
10
11
11
00
6C
arte
riosp
ongi
a fo
liasc
ens
(Pal
las,
176
6)1
11
10
11
00
6C
inac
hyre
lla_(
Rap
hido
teth
ya) e
nigm
atic
a (B
urto
n, 1
934)
11
10
11
10
06
Cio
caly
pta
tyle
ri B
ower
bank
, 187
31
11
01
11
00
6C
lath
ria (T
haly
sias
) len
denf
eldi
Rid
ley
& D
endy
, 188
60
01
11
11
10
6
APP
ENd
iX 4
. lis
t of s
peci
es o
ccur
ring
in fo
ur o
r mor
e tr
opic
al A
ustr
alia
n bi
oreg
ions
.
QM Technical Reports | 002
82
Spe
cies
Nam
eC
EB
NE
PN
EB
E.N
PW
.NP
NW
BN
WP
CW
BC
WP
To
ta
l bi
oreg
ions
Cre
lla_(
Cre
lla) s
pinu
lata
(Hen
tsch
el, 1
911)
01
10
11
10
16
Den
drill
a ro
sea
Lend
enfe
ld, 1
883
11
11
10
00
16
Fasc
aply
sino
psis
retic
ulat
a (H
ents
chel
, 191
2)1
11
11
10
00
6H
alic
lona
(Hal
iclo
na) c
ymae
form
is (E
sper
, 179
4)0
11
01
11
01
6Ia
nthe
lla q
uadr
angu
lata
Ber
gqui
st &
Kel
ly B
orge
s, 1
995
11
11
11
00
06
Lam
ello
dysi
dea
herb
acea
(Kel
ler,
1889
)1
11
01
11
00
6O
cean
apia
ram
sayi
(Len
denf
eld,
188
8)1
00
11
11
01
6P
achy
mat
ism
a 31
11
01
11
01
01
6P
eric
hara
x 58
10
01
11
10
16
Pla
korti
s ni
gra
Levi
, 195
91
11
00
11
01
6R
enio
chal
ina
stal
agm
itis
Lend
enfe
ld, 1
888
10
11
11
10
06
Aap
tos
aapt
os (S
chm
idt,
1864
)1
11
00
11
00
5A
gela
s m
aurit
iana
(Car
ter,
1883
)1
11
01
10
00
5A
xine
lla a
ruen
sis
Hen
tsch
el, 1
912
00
11
11
10
05
Axi
nella
flab
ella
ta (R
idle
y &
Den
dy, 1
886)
11
10
01
01
05
Cin
achy
rella
333
00
01
11
10
15
Cla
thria
(Tha
lysi
as) a
biet
ina
(Lam
arck
, 181
4)0
01
11
11
00
5C
lath
ria (T
haly
sias
) rei
nwar
dti V
osm
aer,
1880
00
11
11
10
05
Cra
niel
la 4
020
00
11
11
10
5D
acty
losp
ongi
a el
egan
s (T
hiel
e, 1
899)
11
11
01
00
05
Dra
gmac
idon
aus
tralis
( B
ergq
uist
, 197
0)1
11
01
10
00
5D
ysid
ea g
ranu
losa
Ber
gqui
st, 1
965
11
10
11
00
05
Ech
inoc
halin
a (E
chin
ocha
lina)
in
term
edia
(W
hite
legg
e,
1902
)1
11
10
01
00
5
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
83
Spe
cies
Nam
eC
EB
NE
PN
EB
E.N
PW
.NP
NW
BN
WP
CW
BC
WP
To
ta
l bi
oreg
ions
Ech
inod
icty
um c
ance
llatu
m (L
amar
ck, 1
814)
00
01
11
11
05
Ech
inod
icty
um c
onul
osum
Kie
schn
ick,
190
01
01
11
01
00
5E
ctyo
plas
ia ta
bula
(Lam
arck
, 181
4)0
00
11
11
01
5H
alic
hond
ria (H
alic
hond
ria) s
tala
gmite
s (H
ents
chel
, 191
2)1
11
01
10
00
5H
iggi
nsia
sca
bra
Whi
tele
gge,
190
70
01
11
11
00
5H
yrtio
s er
ecta
(Kel
ler,
1889
)1
11
01
10
00
5Le
nden
feld
ia p
licat
a (E
sper
, 180
6)0
11
01
10
01
5M
ycal
e (A
reno
chal
ina)
mira
bilis
(Len
denf
eld,
188
7)1
11
10
01
00
5N
eope
trosi
a ex
igua
(Kirk
patri
ck, 1
900)
11
10
11
00
05
Nip
hate
s 30
70
00
11
11
01
5P
eric
hara
x he
tero
raph
is (P
olej
aeff,
188
3)1
11
10
10
00
5P
hake
llia
646
00
11
11
10
05
Phy
llosp
ongi
a la
mel
losa
(Esp
er, 1
794)
11
10
10
00
15
Phy
llosp
ongi
a pa
pyra
cea
(Esp
er, 1
806)
11
10
01
10
05
Pse
udoc
erat
ina
190
00
01
11
10
15
Pse
udoc
erat
ina
364
11
10
11
00
05
Ras
paili
a (R
aspa
ilia)
ves
tigife
ra D
endy
, 189
60
00
11
11
01
5R
enio
chal
ina
122
01
01
11
10
05
Sph
ecio
spon
gia
vaga
bund
a (R
idle
y, 1
884)
10
01
10
10
15
Ste
lletta
100
51
11
00
11
00
5S
telle
tta c
lavo
sa (S
olla
s, 1
888)
01
11
10
10
05
Sty
lissa
flab
ellif
orm
is (H
ents
chel
, 191
2)0
11
01
11
00
5Th
orec
tand
ra e
xcav
atus
(Rid
ley,
188
4)0
00
11
11
01
5
QM Technical Reports | 002
84
Spe
cies
Nam
eC
EB
NE
PN
EB
E.N
PW
.NP
NW
BN
WP
CW
BC
WP
To
ta
l bi
oreg
ions
Trik
entri
on fl
abel
lifor
me
Hen
tsch
el, 1
912
00
01
11
11
05
Aca
nthe
lla c
onst
ricta
Pul
itzer
-Fin
ali,
1982
11
10
00
10
04
Age
las
cf.m
aurit
iana
(Car
ter,
1883
)1
11
10
00
00
4A
ka 3
320
01
01
11
00
4A
mph
imed
on 1
670
01
10
01
01
4A
nom
oian
thel
la p
opea
e B
ergq
uist
, 198
00
00
01
11
01
4A
stro
scle
ra w
illey
ana
List
er, 1
900
11
10
01
00
04
Axe
chin
a ra
spai
lioid
es H
ents
chel
, 191
20
01
11
01
00
4A
xine
lla 2
60
00
11
11
00
4C
ally
spon
gia
(Cal
lysp
ongi
a) 1
380
01
11
10
00
4C
ally
spon
gia
(Cal
lysp
ongi
a) 3
690
10
11
00
01
4C
aulo
spon
gia
perfo
liata
(Lam
arck
, 181
3)0
00
00
11
11
4C
erat
opsi
on p
alm
ata
Hoo
per,
1991
00
01
11
10
04
Cho
ndril
la 1
41
11
01
00
00
4C
inac
hyre
lla 3
761
11
01
00
00
4C
inac
hyre
lla s
chul
zei K
elle
r, 18
800
01
01
11
00
4C
lath
ria (T
haly
sias
) pro
cera
(Rid
ley,
188
4)0
01
11
01
00
4C
lath
ria (T
haly
sias
) tin
gens
Hoo
per,
1996
01
10
11
00
04
Clio
na 1
71
10
01
10
00
4C
liona
76
00
11
10
10
04
Clio
na o
rient
alis
Thi
ele,
190
01
11
01
00
00
4C
liona
pat
era
(Har
dwic
ke, 1
822)
00
11
01
10
04
Coe
loca
rteria
sin
gapo
rens
is (C
arte
r, 18
83)
01
11
10
00
04
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
85
Spe
cies
Nam
eC
EB
NE
PN
EB
E.N
PW
.NP
NW
BN
WP
CW
BC
WP
To
ta
l bi
oreg
ions
Cre
lla_(
Cre
lla) 1
525
11
11
00
00
04
Cym
bast
ela
cora
lliop
hila
Hoo
per &
Ber
gqui
st, 1
992
11
11
00
00
04
Cym
bast
ela
vesp
ertin
a H
oope
r & B
ergq
uist
, 199
20
00
11
11
00
4D
esm
apsa
mm
a 24
10
10
01
11
00
4D
icty
oden
drill
a 36
20
01
01
11
00
4D
isyr
ingi
a di
ssim
ilis
(Rid
ley,
188
4)0
00
11
11
00
4D
ysid
ea 1
60
11
01
10
00
4D
ysid
ea a
rena
ria (B
ergq
uist
, 196
5)1
11
00
10
00
4E
chin
odic
tyum
nid
ulus
Hen
tsch
el, 1
911
01
00
10
01
14
Ect
yopl
asia
van
nus
Hoo
per,
1991
00
01
11
10
04
Esp
erio
psis
48
00
10
10
10
14
Fasc
iosp
ongi
a 29
00
01
10
01
01
4G
ello
ides
fibu
latu
s R
idle
y, 1
884
01
10
11
00
04
Hal
icho
ndria
(Hal
icho
ndria
) 122
71
11
10
00
00
4H
alic
hond
ria (H
alic
hond
ria) 1
790
01
10
11
00
4H
alic
hond
ria
(Hal
icho
ndria
) be
rgqu
ista
e H
oope
r et
al
., 19
971
11
01
00
00
4H
alic
hond
ria (H
alic
hond
ria) p
hake
llioi
des D
endy
& F
rede
rick,
19
240
00
11
11
00
4H
alic
lona
(Hal
iclo
na) 1
381
11
11
00
00
04
Hal
iclo
na (H
alic
lona
) 36
00
01
11
10
04
Hal
iclo
na (H
alic
lona
) 384
10
00
11
10
04
Hym
enia
cido
n 10
661
11
00
00
01
4Io
troch
ota
377
00
11
10
10
04
QM Technical Reports | 002
86
Spe
cies
Nam
eC
EB
NE
PN
EB
E.N
PW
.NP
NW
BN
WP
CW
BC
WP
To
ta
l bi
oreg
ions
Iotro
chot
a co
ccin
ea (C
arte
r, 18
86)
11
10
01
00
04
Ircin
ia 1
228
00
11
10
10
04
Ircin
ia 1
944
11
11
00
00
04
Lios
ina
para
doxa
The
ile, 1
899
11
10
01
00
04
Myc
ale
(Myc
ale)
80
11
00
10
10
04
Myc
ale
(Myc
ale)
pec
tinic
ola
Hen
tsch
el, 1
911
00
01
01
10
14
Oce
anap
ia 1
220
01
11
10
00
04
Pha
kelli
a 24
40
00
11
11
00
4P
hake
llia
stip
itata
(Car
ter,
1881
)1
11
10
00
00
4P
horio
spon
gia
293
01
01
10
10
04
Pse
udoc
erat
ina
1279
11
11
00
00
04
Spi
rast
rella
150
00
01
10
10
14
Spo
ngia
198
31
11
01
00
00
4S
pong
ia h
ispi
da L
amar
ck, 1
813
11
10
00
10
04
Ste
lletta
spl
ende
ns (d
e La
uben
fels
, 195
4)1
11
00
01
00
4S
tylis
sa c
arte
ri (D
endy
, 188
9)1
11
00
01
00
4Te
thya
coc
cine
a B
ergq
uist
& K
elly
-Bor
ges,
199
10
01
10
01
01
4Th
rinac
opho
ra c
ervi
corn
is R
idle
y &
Den
dy, 1
887
00
01
11
10
04
Trac
hycl
adus
laev
ispi
rulif
er C
arte
r, 18
791
00
00
01
11
4X
esto
spon
gia
158
00
11
10
10
04
Report for the National Oceans Office C2004/020Collation and validation of museum collection databases related
to the distribution of marine sponges in northern Australia
87
APPENdiX 5. Metadata for the sponge dataset to accompany NOO, gA and OZCAM databases
Sponge Specimen Point database
Data Type Biolink Relational Database
Marine Planning Region
Eastern-central Marine Region (ECMR)
North-east Marine Region (NEMR)
North-west Marine Region (NWMR)
Northern Marine Region (NMR)
South-east Marine Region (SEMR)
South-west Marine Region (SWMR)
Western-central Marine Region (WCMR)
Custodian Queensland Museum
Jurisdiction Australia
Originator Organisations (sources of the base data)
Queensland Museum
Contact Queensland Museum
Queensland Centre for Biodiversity
PO Box 3300,
South Brisbane,
Qld, 4101, Australia
www.Qmuseum.qld.gov.au
_________________________________
Abstract This is a dataset of sponge distributions in tropical
and subtropical Australia collected by the Queensland Museum (1991- present); the US National Cancer Institute shallow water collection contract (sponges) undertaken by James Cook University and the Australian Institute of Marine Science (1988-1991)
now housed at the Queensland Museum Brisbane campus; the Northern Territory Museum sponge dataset (1982-1991), with some additional records of selected (surrogate) species collected since 1991, and some Western Australian Museum records of selected species. Majority of records from tropical Australia but with additional material from the Indo-west Pacific islands and Antarctica.
Attributes Taxonomic names, authorities, unique
specimen and registration numbers, collection date, collector, collection method, locality, latitude, longitude, position source, position error, depth minimum, depth maximum, depth source, depth error, habitat, storage site, storage condition, identified by, date of identification, identification accuracy and collection notes.
limitations Variable taxonomic rigor applied across
the collections (different identifiers), method of fixing locality records (GPS, gazetteer etc.) and depth recording (sounder, dive computer etc.), with coding applied for these variables within a defined confidence interval.
documentation links www.Qmuseum.qld.gov.au
h t t p : / / w w w. q m u s e u m . q l d . g o v. a u /organisation/sections/sessilemarineinvertebrates/spong.pdf
data links h t t p : / / w w w. q m u s e u m . q l d . g o v. a u /
beginning date: 1 Jan 1982 Ending date: 22 July 2004 Progress: Complete Maintenance and Update Frequency: Not specified Stored Data Format(s)
Biolink Relational Database
Stored data volume 220 MB
Available Format Type(s) Biolink Export: ASCII text, RTF, Microsoft
Excel, Microsoft Access, Microsoft Word, XML, Bitmap Distribution maps
Access constraint Not all attributes available to the public
__________________________________
lineage The Sponge Dataset was created from
conversion of R:Base databases from Queensland Museum and Northern Territory Museum Data. The specimens were reclassified
under a revised classification published in Systema Porifera (2002). Data confidence levels were determined for location, depth and identifications. The creation of GIS distribution maps and Predictive distribution maps were then carried out on selected key taxa.
Positional accuracy The majority of locations and depths are
recorded in precise latitudes and longitudes (decimal degrees), and metres respectively. The accuracies of the locations are split into 5 groups(1) Excellent (GPS to 2 to 3 decimals and depth
from dive computer)(2) Good (GPS to 1 decimal place and depth from
dive computer or depth sounder)(3) Satisfactory (Locality determined from map,
depth from dive computer or sounder)(4) Poor (Locality and depth determined from
anecdotal evidence from collector or gazetter)
(5) Doubtful (anecdotal evidence questionable, or antiquated record from museum register)
Those locations without precise latitudes and longitudes are given a rating (0) Unknown origin, as these collections locations were either not recorded or recorded as simply e.g. “Queensland”.
Attribute accuracy Variable
logical consistency report
Completeness Complete
____________________________________
Metadata Access Public
Metadata Entry Created 22 Jul 2004 by Merrick Ekins