Tdwg2011

Semantic extensions to ecoRelevé

Olivier Rovellotti

• The projet• The Sem Web• The extentions

Reduce Software complexity

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http://www.google.com/imgres?imgurl=http://www.ird.fr/informatique-scientifique/images/etat_art_sig/data/GvGISLogo.gif&imgrefurl=http://www.ird.fr/informatique-scientifique/outils/outils_is/carto/etat_art_opengis/solutionbd.php?mode=solution&selection=GvSIG&usg=__0BIYbsgk-qWfKBUi4psMj9Y6Fc8=&h=151&w=150&sz=9&hl=fr&start=1&um=1&itbs=1&tbnid=W8zaIyQrdfbRMM:&tbnh=96&tbnw=95&prev=/images?q=gvSig&um=1&hl=fr&rls=com.microsoft:fr:IE-SearchBox&rlz=1I7FTSB_fr&tbs=isch:1

http://www.google.com/imgres?imgurl=http://www.ashleyangell.com/wp-content/uploads/2009/04/logopg70.gif&imgrefurl=http://ashleyangell.com/tag/postgres/&usg=__cOxcipOX_KRG57wTkuvjY2ZctR0=&h=396&w=500&sz=59&hl=fr&start=5&um=1&itbs=1&tbnid=g1pq8Cj_9zI3ZM:&tbnh=103&tbnw=130&prev=/images?q=postgres+post&um=1&hl=fr&rls=com.microsoft:fr:IE-SearchBox&rlz=1I7FTSB_fr&tbs=isch:1

For who?

People we know:

People we don’t know?

Define Protocols Collect data

Analyzedata

AskQuestions

Data Admin

What for?

Citizen Science

Professional Research

PHD

DBA/GIS

3 Modules

RDF

2007

2009

Life Science

2012

Now what ?

What is it good for?

• Better annotations• Easier data integration• More extensible• More expressive

Controlled Vocabularies:

Build protocols forms

Enhance existing dataset

Aggregate data

Annotations

ecoRelevé

Core

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1.0

Observation Layers

Data integration

ecoRelevé

explorer

Data enhancement

4 dimensions

Time

Biology

Space

People

Time

Biology

Space

PeopleFriends

Work

FOAF

Localities Protected Areas

Last weekAt the same time as

Conservation Status

Family

GeoSparql

http://linkedgeodata.org/

Data connector

Milan royalMilvus milvusRed Kite

Rod Page - what can you do with it ?

http://vsmith.info/Going-Digital

SPARQL:Catch the frog

select ?scientificName, ?status, ?lat, ?long FROM <urn:rdf.TdwgFroggyChallenge>where { ?s rdf:type uniprot:Molecule . ?s terms:relation ?id. ?s terms:subject ?taxonInGB . ?id geo:lat ?lat. ?id geo:long ?long. ?taxonInDbPedia dbOwl:conservationStatus ?status. ?taxonInGB rdfs:seeAlso ?taxonInDbPedia. ?taxonInGB uniprot:scientificName ?scientificName.}

ecoReleve

SparQL

TAISTY!

Take home message :

• There is a learning curve• But RDF is not that difficult• One API is better than 10 • We need data in RDF to experiment

• Reasoning is for later …

Thanks ..

@orovellotti

Tdwg2011

Technology

data connector

taxoningb uniprot

id geo

s terms

taxoningb rdfs

type uniprot

taxonindbpedia dbowl

life science