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Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Dec 14, 2015

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Dean Welborne
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Page 1: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Take-home postcard

Page 2: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Basis set: Atomic orbitals

s

p

d

f SIESTA: Strictly localized

(zero beyond cut-off radius)

Page 3: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Effective potential for valence electronsPseudopotential

r (a.u.)

V(r)

?

Veff

r-Ze2

r

The internal electrons do not participate in the chemical bond

Page 4: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

All electronPseudopotentia

l

Muffin-TinLAPW

Plane wavesLocalized Orbitals

Simple taxonomy of Ab-initio codes

Page 5: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

• Pseudopotential generation

• Number of k-points

• Electronic temperature

• XC functional: LDA, GGAs

• Harris functional vs SCF

• Spin polarization

• SCF convergence tolerance

• Supercell size (solid & vacuum)

• Geometry relaxation tolerance• Basis set:

• Size (SZ, DZ, DZP...)

• Range

• (Shape)

• Real space mesh cutoff

Things to keep in mind

Plane-wave cutoff

SIESTAPW codes

Lab Apparatus

Page 6: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Basis Size

Quick and dirty calculations

Highly converged calculations

Complete multiple-ζ

+

Polarization

+

Diffuse orbitals

Minimal basis set

(single- ζ; SZ)

Depending on the required accuracy and

available computational power

+ Basis Optimization

Page 7: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Easy setup with reasonable defaults

NumberOfSpecies 1 number-of-atoms 2

LatticeConstant 5.43 Ang %block LatticeVectors 0.0 0.5 0.5 0.5 0.0 0.5 0.5 0.5 0.0%endblock LatticeVectors

%block ChemicalSpeciesLabel 1 14 Si %endblock ChemicalSpeciesLabel

AtomicCoordinatesFormat Fractional%block AtomicCoordinatesAndAtomicSpecies 0.0 0.0 0.0 1 Si 1 0.25 0.25 0.25 1 Si 2%endblock AtomicCoordinatesAndAtomicSpecies

Page 8: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Simple level of specification

PAO.Basis.Size SZP SIZEPAO.EnergyShift 150 meV RANGEPAO.SplitNorm 0.25 SHAPE

#---------------------------

MeshCutoff 200 Ry

Page 9: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

%block PAO.BasisH 2 0.5n=1 0 2 3.5 2.8 E 40.0 3.0 1 1n=2 1 1 4.5 1%endblock PAO.Basis#----------------------

Grid.Cell.Sampling T

Higher degree of control

Page 10: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)
Page 11: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Real-Space Grid

Eggbox effect

Page 12: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)
Page 13: Take-home postcard. Basis set: Atomic orbitals s p d f SIESTA: Strictly localized (zero beyond cut-off radius)

Emilio Artacho (Cambridge University)

Pablo Ordejón (ICMAB, Barcelona)

José M. Soler (UAM, Madrid)

Julian Gale (Curtin Inst. of Tech., Perth)

Richard Martin (U. Illinois, Urbana)

Javier Junquera (U. Cantabria, Santander)

Daniel Sánchez-Portal (UPV, San Sebastián)

Eduardo Anglada (Nanotec)

Alberto García (ICMAB, Barcelona)

The SIESTA Team