Synthetic Biology Open Language (SBOL): Community- Driven Standard for Communi- cation of Synthetic Biology Designs Jacob Beal, Bryan Bartley, Kevin Clancy, Goksel Misirli, Nicholas Roehner (Editors), Herbert Sauro (Chair), & SBOL community SEED Conference Boston, MA June, 2015
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Synthetic Biology Open Language (SBOL): Community-Driven Standard for Communi- cation of Synthetic Biology Designs Jacob Beal, Bryan Bartley, Kevin Clancy,
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Synthetic Biology Open Language (SBOL): Community-Driven Standard for Communi-cation of Synthetic Biology DesignsJacob Beal, Bryan Bartley, Kevin Clancy, Goksel Misirli, Nicholas Roehner (Editors), Herbert Sauro (Chair), & SBOL community
SEED ConferenceBoston, MAJune, 2015
The SBOL Community
• 100+ people from all around the world• 30 universities, 14 companies, 8 others• Ongoing development starting 2008
Majorfunders:
Synthetic Biology Open Language
FASTA
GenBank
SBOL 1.1
SBOL 2.0
ACTGTGCCGTTAAACGTGATTAAATCCGTACTGATAT…
TetR GFPpTet
aTcGFP
aTc detector GFP reporter
TetR GFPpTet
aTc detector GFP reporter
TetR GFPpTet
TetR
Purpose of SBOL 2.0
Lots of different synthetic biology resources…
GenBank
Measurement Data
Strain Data
LIMSLab Automation
HT Assays
Repositories & Databases Automation & Integration
Modeling
Sequencing & Synthesis
Emerging Approaches
some icons
… SBOL is a "hub" for linking them togetherBioPAX BioModels.Net
SOChEBI
Components of SBOL
SBOLv Glyphs
Tool
Tool
Tool
Tool
Tool
SBOL 2.0Data Model
Developer Community
fonts
examples
serialization
ontologies
images
libSBOL
SBOLdocuments
SBOLdocuments
SBOLdocuments
Other standards& resources
GenBank
What SBOL 2.0 Represents
• Sequence structure• Incomplete designs• Qualitative function