15-05-11 8:01 PM SW041.r1.trimmed.fastq FastQC Report Page 1 of 12 file:///Users/natashadudek/Desktop/SW041.r1.trimmed_fastqc.html#M11 FastQC Report Mon 11 May 2015 SW041.r1.trimmed.fastq Summary Basic Statistics Per base sequence quality Per tile sequence quality Per sequence quality scores Per base sequence content Per sequence GC content Per base N content Sequence Length Distribution Sequence Duplication Levels Overrepresented sequences Adapter Content Kmer Content Basic Statistics Measure Value Filename SW041.r1.trimmed.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1449494 Sequences flagged as poor quality 0 Sequence length 29-76 %GC 43
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15-05-11 8:01 PMSW041.r1.trimmed.fastq FastQC Report
Page 1 of 12file:///Users/natashadudek/Desktop/SW041.r1.trimmed_fastqc.html#M11
FastQC Report Mon 11 May 2015SW041.r1.trimmed.fastq
Summary
Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content
Basic StatisticsMeasure Value
Filename SW041.r1.trimmed.fastq
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 1449494
Sequences flagged as poor quality 0
Sequence length 29-76
%GC 43
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Per base sequence quality
Per tile sequence quality
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Per sequence quality scores
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Per base sequence content
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Per sequence GC content
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Per base N content
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Sequence Length Distribution
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Sequence Duplication Levels
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Overrepresented sequencesSequence Count Percentage Possible
Source
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC 3639 0.2510531261253927 No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG 3151 0.21738620511709603 No Hit
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Adapter Content
Kmer Content
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Sequence Count PValue Obs/Exp Max Max Obs/Exp Position
TCCCTAG 2395 0.0 21.991716 10
CCCTATG 900 0.0 21.112513 7
GGGATAA 10505 0.0 20.858673 1
AGGGTAA 10625 0.0 20.613134 9
TCCCTAT 2350 0.0 20.56874 6
GGTAATT 3110 0.0 20.472958 11
ATAACAG 11040 0.0 20.231508 4
CAGGGTA 10890 0.0 20.080917 8
ATCCCTA 7485 0.0 20.04141 9
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CGGTCCG 90 0.005637958 19.223375 34
GGGTAAT 10670 0.0 19.214022 10
GATAACA 11650 0.0 18.944563 3
ATTCCTA 480 0.0 18.749952 14
GGATAAC 11725 0.0 18.73808 2
ACAGGGT 11810 0.0 18.54484 7
CCCTAGT 1095 0.0 17.961618 11
AACAGGG 12395 0.0 17.750269 6
GGTAATC 2690 0.0 17.349354 11
CTGTTAT 8875 0.0 17.316301 4
CCTGTTA 8850 0.0 17.291075 3
Produced by FastQC (version 0.11.2)
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