SUPPLEMENTARY INFORMATION 2 · 2012-10-23 · 1 SUPPLEMENTARY INFORMATION 2 Synthesis of self-assembling glycerotriazolophanes Mohit Tyagi, Nikhil Taxak, Prasad V. Bharatam, K. P.
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SUPPLEMENTARY INFORMATION 2
Synthesis of self-assembling glycerotriazolophanes
Mohit Tyagi, Nikhil Taxak, Prasad V. Bharatam, K. P. Ravindranathan Kartha*
Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and
S1 Computational details S2 Procedure for DFT calculation in flowchart-form Figure S1 The polymeric arrangement of macromolecules 5a and 6a and correlation with their
SEM analysis Figure S2 The AIM analysis of monomeric and dimeric structures of macromolecules 5a and 6a
indicating the presence of different interactions S3 Archive-entries of all the optimized geometries, along with absolute energies and
frequencies
Supporting Information
S1 Computational details
All the Density Functional Theory (DFT)1 calculations were carried out using the Gaussian03 package2 utilizing gradient geometry optimization. Geometry optimizations were performed using the B3LYP functional with the 6-31+G(d) basis set.3,4 Initially, the geometries of monomers (5a and 6a) were optimized using the same basis set. The optimized geometries of the monomers were utilized in constructing the geometries of dimers (D-5a and D-6a), which were further optimized. Further, polymeric arrangements of 5a and 6a were obtained using many optimized geometries of dimers. The different polymeric arrangements of 5a and 6a were observed owing to different inter- and intramolecular interactions as described in the results-section. The vibrational frequency calculations for all structures at the same level of geometry optimization were performed to characterize them as minima on the potential energy surface.5 The estimates of zero point energy values were scaled by 0.9806 before employing them in correcting the absolute energies.6 The charge analysis was carried out using the Natural Bond Orbital (NBO) method.7 Atoms in molecules (AIM) method8 was employed to trace the bond paths associated with intra- and intermolecular interactions, using AIM2000 software package. The energy and geometric parameters used in the discussion are from B3LYP/6-31+G(d) method unless otherwise specifically mentioned.
1 (a) Parr, R. G. Density Functional Theory of Atoms and Molecules; Oxford University Press: New York, 1989. (b) Pople, J. A.; Beveridge, D. L. Approximate Molecular Orbital Theory; McGraw-Hill Book, New York, 1970.
2 Gaussian 03, Revision C.02, Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, Jr., J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; and Pople, J. A.; Gaussian, Inc., Wallingford CT, 2004.
3 Becke, A. D. J. Chem. Phys. 1993, 98, 5648. 4 Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. 1988, B37, 785. 5 Ochterski, J. W. Gaussian, Inc. http://www.Gaussian.com/g_white-pap/thermo.htm 6 Scott, A. P.; Radom, L. J. Phys. Chem. 1996, 100, 16502-16513. 7 Reed, A. E.; Wienhold, F.; Curtiss, L. A. Chem. Rev. 1988, 88, 899-926. 8 Bader, R. Chem. Rev. 1991, 91, 893–928.
S2 Procedure for DFT calculation in flowchart-form
Figure S2 The AIM analysis of monomeric and dimeric structures of macromolecules 5a and 6a showing the presence of different interactions (Yellow points: Ring critical points; Red points: Bond critical points)