Top Banner
CHAPTER-2 SiO 2 BASED NANOBIOSENSOR MONITORING MITOXANTRONE-DNA INTERACTION
26

SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Jan 19, 2020

Download

Documents

dariahiddleston
Welcome message from author
This document is posted to help you gain knowledge. Please leave a comment to let me know what you think about it! Share it to your friends and learn new things together.
Transcript
Page 1: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

CHAPTER-2

SiO2 BASED NANOBIOSENSOR

MONITORING MITOXANTRONE-DNA

INTERACTION

 

Page 2: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 33

2.1 ABSTRACT

The present study involves the development of nanobiosensor to determine toxicological

behavior of Mitoxantrone (MTX). Mitoxantrone intercalates with DNA and produce

MTX-DNA adduct, resulting in blockade of protein synthesis and excessive production

of free radicals in the myocardium eventually leads to cardiac toxicity. Potentiometry was

applied to develop an electroanalytical procedure for the determination of MTX and its

interaction with DNA immobilized on the electrode surface modified with Silicon

dioxide (SiO2) nanoparticles. The nanobiosensor immersed in MTX solution to monitor

MTX-DNA interaction with respect to time and alters the resistance of the

nanobiosensor. It was observed that MTX-DNA interaction is fast initially and as time

elapses, the change in interaction gets slow due to formation of MTX-DNA adduct. The

MTX-DNA adduct was validated by UV-visible and FT-IR spectroscopy. Determination

limit of the nanobiosensor is up to10 ng/ml. This study suggests that the nanobiosensor

allows non-invasive, real-time monitoring of the drug-DNA interaction changes by

measuring the potential at DNA/sensor interface which can prove to be an important tool

in drug discovery pipelines and molecular toxicology.

Page 3: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 34

2.2 INTRODUCTION

Nanobiosensors and nanobiochips are gaining importance in the field of life science

because of its faster, direct, more accurate, more selective detection at very low

concentrations. Enormous research has been carried out for the development of

nanobiosensor which can be useful in life science field like clinical diagnosis, genomics,

proteomics and toxicology. But, until now nanobiosensor has never been developed

which can monitor or detect toxicity at nano gram level. Nanoparticles play a key role in

adsorption of biomolecules due to their large specific surface area and high surface free

energy. The combination of nanomaterials and biomolecules is of considerable interest in

the field of nanobiotechnology. Recently, many kinds of nanometer materials such as

gold1-3

, platinum4 and silicon dioxide

5-6 nanoparticles are widely applied for

Electrochemical based nanobiosensor due to its conducting and semiconducting

properties. Also, these nanoparticles have been used to catalyze biochemical reactions,

improving coverage and binding ability of the functional components and this capability

can be usefully employed in biosensor design7.

SiO2 nanoparticles have been used to construct biosensor due to its biocompatibility as

well as good electron transfer properties. In the work of Xi-Liang Luo and co-workers,

SiO2 nanoparticles were introduced in the construction of field-effect transistors

(ENFETs) biosensor which can provide a biocompatible environment and improve the

enzyme activity8. Chen and his team reported the effect of SiO2 nanoparticles on the

adsorbability and enzymatic activity of glucose oxidase9. The oligonucleotide-modified

silica nanoparticles were prepared by Lisa R. Hilliard and her coworkers which provide

an efficient substrate for hybridization and used in the development of DNA biosensors

and biochips10

. Ningning Zhu and his group developed electrochemical DNA

nanobiosensor which consists of platinum nanoparticles combined with Nafion-

solubilized Mutli-walled carbon nanotubes.4 M. Yousef Elahi and his team developed

polypyrrole (PPy) nanofiber modified electrode to monitor DNA-salicylic acid/Aspirin

interaction. A Platinum electrode was electrochemically modified by the polymerization

of pyrrole to obtain a nanofiber PPy film using a pulse potential method. The reaction

rate of Aspirin with DNA was lower than that of Salicylic Acid with DNA, potentially

Page 4: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 35

due to the steric hindrance of the acetyl group when binding to the minor groove11

. Many

research papers have been reported on silicon dioxide nanowire based Nanosensor to

study DNA interaction and DNA hybridization studies12,13

. Overall, these studies suggest

that silicon dioxide shows good biocompatibility as well as good electron transfer

properties. Hence, it can be useful for construction of biosensor to improve its

functionality.

The electromotive force (EMF) is the maximum potential difference or charge between

two electrodes. This causes electrons to move so that there is an excess of electrons at

one point and a deficiency of electrons at a second point14

. The electrochemical signals

are usually generated by redox reactions and changes in ionic composition.

Potentiometric sensors measure the potential of an electrode at equilibrium (i.e. in the

absence of the appreciable currents) by measuring the electrochemical cell potential vs. a

reference electrode potential15

. MTX allow extensive stabilization of the intercalated

adduct by hydrogen-bonding interactions with DNA16

. Thus, this nanobiosensor has been

designed to monitor interaction of MTX with DNA.

In this report, we developed a real-time nanobiosensor by modifying the electrode with

SiO2 nanoparticle and DNA. This nanobiosensor was immersed in the solution containing

MTX to monitor MTX-DNA interaction (Figure 2.1). Mitoxantrone, an anti-cancer agent

has a planar heterocyclic ring structure and the basic side groups are critical for

intercalation into DNA. Binding of MTX to DNA inhibits both DNA replication and

RNA transcription. Mitoxantrone inhibits DNA and leads excessive production of free

radicals in myocardium responsible for producing cardiotoxicity17,18

. Therefore, the

change in MTX-DNA interaction was observed by measuring changes in EMF (mV). All

experiments were carried out at neutral pH and at room temperature since double – strand

of DNA breaks at neutral pH and single - strand breaks at high pH19

.

Page 5: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 36

Figure 2.1: Schematic representation of MTX-DNA interaction development of

nanobiosensor and monitoring of MTX-DNA interaction

Page 6: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 37

2.3 EXPERIMENTAL

2.3.1 Chemicals

Highly polymerized calf thymus DNA (MP Biomedicals, US) was used in this study.

DNA dilutions were prepared in Phosphate buffer pH 7. Phosphate buffer was prepared

by dissolving 0.1M disodium hydrogen phosphate in water and adjusting the pH by

adding 0.1M HCl. Tetraethylorthosilicate (TEOS), ammonium hydroxide (NH4OH) and

ethanol were used to prepare SiO2 nanoparticles. All chemicals were purchased from E-

Merck (India, Mumbai) and were all of analytical reagent grade. Mitoxantrone was

obtained from Cipla Ltd (India, Mumbai) and used without purification. All aqueous

solutions were prepared in Milli-Q water from a Millipore purification system and all

experiments were done at room temperature.

2.3.2 Apparatus

The potential measurements were carried out at 25.0±0.1 ◦C with a digital pH meter

(Model LI120, ELICO, India). An Saturated calomel electrode (SCE) was used. UV and

FT-IR spectra were obtained on a JASCO V-630 spectrophotometer and a JASCO FT-IR

4100, respectively. Particle size of SiO2 was carried out by Malvern Zeta-sizer (Model-

The Zetasizer Nano ZS, UK).

2.3.3 Preparation Of SiO2 Nanoparticles

SiO2 nanoparticles were prepared according to the literature 20-22

. To 20 ml of ethanol,

2ml of TEOS was added followed by 4ml of concentrated NH4OH. After that it was

stirred for 12-14 hours at 200-300 rpm. Then the mixture obtained was centrifuged at

3000 rpm for 30-50 min. Finally a white color powder was formed which was named as

silica nanoparticle.

Page 7: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 38

2.3.4 Fabrication of Electrode By SiO2 Nanoparticles

The surface of working calomel electrode was modified with SiO2 nanopaticles. An

amount of 2.0 mg of SiO2 were dispersed in a 10 ml of ethanol solution. After about 10

min of sonication, uniformly dispersed SiO2 nanoparticles were formed. Before

modifying the electrode with SiO2, the electrode was cleaned by washing it with distilled

water and was allowed to dry. Then the dry electrode was immersed in solution

containing SiO2 nanoparticles for 30 min with stirring at room temperature. The electrode

was removed and was left for drying for about 15 min. Potentiometric measurement was

performed at working calomel electrode versus reference calomel electrode.

2.3.5 Immobilization Of DNA On SiO2 Modified Electrode

10 ppm DNA solution was prepared in phosphate buffer pH 7. The electrode was

immobilized by drop casting technique. A 10 µL (100 ng) drop of DNA was delivered on

the modified SiO2 surface of electrode by micropipette and allowed to dry in air. After

drying, this nanobiosensor was used for monitoring toxicological behavior of MTX.

Page 8: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 39

2.4 RESULTS AND DISCUSSION

2.4.1 Characterization of SiO2

The morphology of SiO2 were performed by SEM. Figure 2.2 illustrates that the particles

are predominantly spherical in shape with diameter ranging from 20 to 25 nm. Larger and

uneven shaped particles with diameter 35–70 nm were also obtained.

Figure 2.2: SEM image of SiO2

Particle sizes of SiO2 were determined by Malvern zeta-sizer which was found as an

average 20 nm (Figure 2.3). Particles were ranging from 46.98 nm (81.3%), 0.6549 nm

(7.3%), and 2210 nm (5.8%).

Page 9: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 40

Figure 2.3: Particle size distribution of SiO2

2.4.2 MTX-DNA Interaction In Solution

MTX solution of varying concentration (100, 75, 50, 25, and 10 ng/ml) was prepared in

distilled water. The MTX-DNA interaction in solution was carried out at room

temperature. 1 ml of 100 ng/ml of MTX and 10 µL of 10 µg/ml of DNA was taken to

perform interaction study by potentiometry. As shown in Figure 2.4, the electrode

potential shifted to negative direction steadily. But, at one point, the change in EMF was

not increased. This indicates the formation of MTX-DNA adduct. Initially the change in

EMF was very fast, but as time elapse, the change in EMF gets slow. In all MTX

concentration series, potential shifted steadily but at one stage it get stopped due to the

formation of MTX-DNA adduct. This MTX-DNA complex was further validated by UV

and FT-IR spectroscopy.

MTX interacts preferentially with DNA binding with guanine, cytosine base pairs. 17

The

sensor measures the two-electron oxidation process of 5,8- hydroxyl substituents on

MTX while interacting with DNA. No more hydrogen from guanine and cytosine base

can be liberated and oxidized which could lead to the stopped EMF change. The change

in EMF with respect to time indicates the interacting behavior of MTX with DNA.

Page 10: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 41

Table 2.1: Time dependent changes of MTX-DNA interaction determined in solution

(without Nanobiosensor)

Time EMF

100 ng/ml 75 ng/ml 50 ng/ml 25 ng/ml

5 135 ± 3 124.7 ± 1.5 123.3 ± 1.5 114 ± 1

10 133.7 ± 3.1 122.7 ± 1.5 121.7 ± 1.5 113 ± 1

20 132.7 ± 3.1 121.3 ± 1.5 120.3 ± 0.6 112.3 ± 0.6

30 132.3 ± 1.5 120 ± 1 119 ± 1 111.3 ± 1.5

60 131 ± 1 119.3 ± 0.6 117.3 ± 0.6 111 ± 2

120 129.3 ± 2.1 118.7 ± 0.6 116 ± 1 110 ± 2

240 127.6 ± 1.5 118 ± 1 115.7 ± 0.6 109 ± 2

300 127 ± 1 117.7 ± 0.6 115.3 ± 0.6 109 ± 2

360 126 ± 2 117 ± 1 115.3 ± 0.6 109 ± 2

480 125.3 ± 1.5 117 ± 1 - -

600 125.3 ± 1.5 117 ± 1 - -

Page 11: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 42

In case of 100 ng/ml of MTX, the interaction of MTX with DNA showed more potential

difference (Table 2.1, Figure 2.4) as compare to 75, 50 and 25 ng/ml of MTX due to

higher amount of MTX was available to interact with DNA. Thus, this study suggests that

concentration of drug is directly proportional to the sensitivity of sensor and shows

significant EMF changes. It was also observed, that no measurable change was found in

EMF at 10 ng/ml of MTX concentration. Thus, this study suggests that concentration of

drug is directly proportional to the sensitivity of sensor and at very low concentration no

EMF changes are observed.

Figure 2.4: MTX-DNA interaction in solution at various concentration of MTX

2.4.3 Nanobiosensor Monitoring MTX-DNA Interaction

MTX (100, 75, 50, 25 and 10 ng/ml) and DNA interaction was performed by developed

Nanobiosensor. The results obtained from developed Nanobiosensor were significant

from without modified sensor (Figure 2.5, Table 2.2). In all MTX concentration series,

the MTX-DNA interaction shows more change in electrode potential. The electrode

potential decreases steadily until all the amount of MTX gets interacted with DNA. The

biocompatibility of SiO2 nanoparticles provides a suitable environment for DNA to keep

Page 12: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 43

its bioactivity and prevent DNA leakage. Moreover, signals from sensor improve much

better due to semiconducting properties of SiO2, which provide a faster pathway for

electrons to be transferred between the active sites of the DNA and the surface of the

SiO2. Thus, Nanobiosensor reveals high sensitivity.

Figure 2.5: Nanobiosensor monitoring MTX-DNA interaction at various concentration of

MTX

The linearity and reproducibility of the nanobiosensor was investigated by performing

three experiments using the same working calomel electrode. It has been observed that in

all MTX concentration series, a significant change in EMF was reported with

nanobiosensor. Also, the change in EMF was remarkable at lower concentration i.e., 10

ng/ml of MTX determined by nanobiosensor, while without nanobiosensor didn’t show

any change in EMF. So, sensitivity was also improved at lower concentration. Thus, the

developed nanobiosensor allows real-time monitoring of MTX-DNA interaction, which

can play a pivotal role in screening of drugs while developing series of new drugs.

Page 13: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 44

Table 2.2: Time dependent changes of MTX-DNA interaction determined by

nanobiosensor

Time EMF

100 ng/ml 75 ng/ml 50 ng/ml 25 ng/ml 10 ng/ml

5 185 ± 1 171 ± 1 161.3 ± 3.1 157.3 ± 2 153.3 ± 1.5

10 184 ± 1 169 ± 1 160.3 ± 2.5 156 ± 1.7 153 ± 1

20 182.3 ± 1 167.3 ± 0.6 158.7 ± 2.5 155.3 ± 2.5 151.7 ± 0.6

30 180.7 ± 1.5 165.3 ± 1.5 157 ± 1.7 154.3 ± 1.5 150.3 ± 0.6

60 180 ± 0.6 163.3 ± 2.1 155.7 ± 1.5 152.7 ± 2.0 150.7 ± 0.6

120 179.3 ± 0.6 161.7 ± 2.5 155 ± 3 151.3 ± 0.5 148.7 ± 0.6

180 176.3 ± 0.6 160.3 ± 2.5 155 ± 1.7 151.3 ± 1.2 147 ± 1

240 173.7 ± 1.5 158.7 ± 2.5 153.3 ± 1.5 149.7 ± 2 145.7 ± 0.6

360 171 ± 1 157 ± 1.7 151.7 ± 1.2 148 ± 2.0 145.3 ± 1.5

480 170 ± 1 155.7 ± 1.5 150.3 ± 0.6 146.7 ± 2.1 144.3 ± 0.6

600 168 ± 2 155 ± 3 150 ± 2 145.7 ± 1.7 143.3 ± 0.6

720 165.7 ± 3 155 ± 1.7 148.3 ± 1.5 145 ± 2.1 142.7 ± 0.6

840 164 ± 2.6 153.3 ± 1.5 147.3 ± 1.5 144.7 ± 2.5 141.7 ± 1.5

960 162 ± 3 151.7 ± 1.1 146.3 ± 1.5 144.3 ± 2.5 141.7 ±1.5

1080 161 ± 3 150.3 ± 0.6 145.3 ± 1.5 144.3 ± 2.5 141.7 ± 1.5

1100 158.7 ± 3.1 150 ± 2 145.3 ± 1.5 144.3 ± 2.5 141.7 ± 1.5

1220 157.7 ± 3.1 148.3 ± 1.5 145.3 ± 1.5 144.3 ± 141.7 ± 1.5

1440 156.7 ± 2.1 148.3 ± 1.5 - - -

1560 156.7 ± 2.1 148.3 ± 1.5 - - -

1680 156.7 ± 2.1 - - - -

Page 14: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 45

2.4.4 Sensitivity and selectivity of Nanobiosensor

To evaluate the performance of the Nanobiosensor, potential shift ∆E was calculated, i.e.

the potential change from equilibrium time to the end of the experiment. From 2.6, it is

clearly seen that, the potential shift is directly proportional to MTX concentration. If, the

concentration of MTX is higher, more potential shift was observed. Nanobiosensor

showed more ∆E than without modification of sensor at all MTX concentration series. At

10 ng/ml of MTX concentration series, Nanobiosensor showed remarkable change in

potential shift ∆E, while without modified sensor doesn’t showed any change in potential

shift ∆E. This confirms the improvements of electrical signals and thus, Nanobiosensor

reveals high sensitivity.

Figure 2.6: Potential difference between nanobiosensor and without nanobiosensor at

various MTX concentration series

On addition of incremental concentrations of MTX to DNA, potential difference

increases in all concentration series. It is evident from the Table 2.3 that interacting

behavior of DNA with the stock concentrations of MTX are as follows:

100 ng/ml > 75 ng/ml > 50 ng/ml > 25 ng/ml > 10 ng/ml.

Page 15: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 46

Table 2.3: Potential difference at various concentration series

MTX

concentration

ng/ml

Nanobiosensor

∆E

SD Without

Nanobiosensor

∆E

SD

100 28.67 2.3 9.67 2.3

75 22.66 0.58 8.33 0.58

50 17.66 2.08 8.33 0.58

25 13.67 0.58 5 1.73

10 9 1.73 0 0

2.4.5 Analytical performance of Nanobiosensor

The linearity and reproducibility of the nanobiosensor was investigated by performing

three different experiments using the same working electrode. Figure 2.7 depicts the

calibration curves of MTX concentration ranging from 100 to 10 ng/ml versus the ∆E

values. It was observed that the nanobiosensor showed good reproducibility for all three

measurements. The working electrode was water-washed to take away the DNA residuals

from the surface of the electrode after each measurement. The stability of the

nanobiosensor was tested by performing the experiments daily for a period of 15 days

while storing in a suitable environment when not in use. Almost 90% of the initial

sensitivity was retained at the end of the period and the biosensor half-life is estimated to

almost 1 month.

Table 2.4: Comparison of the analytical parameters for nanobiosensor and without

nanobiosensor

Method Shelf-

life

Range Reproducibility

Nanobiosensor 15 days 10-100 ng/ml >10 times

Without nanobiosensor - 25-100 ng/ml -

Page 16: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 47

Figure 2.7: Calibration curves of MTX concentration versus the ∆E values.

The comparison of analytical performances for determining MTX-DNA interaction by

nanobiosensor and without nanobiosensor is given in Table 2.5. For nanobiosensor, the

values of correlation coefficient (R2), slope and intercept were found as 0.994, 32.83and

4.83 respectively. Limit of detection (LOD) and limit of quantification (LOQ) were found

as 1.42 (µg/mL) and 4.36 (µg/mL) respectively. For Without nanobiosensor, the values of

correlation coefficient (R2), slope and intercept were found as 0.842, 13.067and 2.267

respectively. LOD and LOQ were found as 2.51 (µg/mL) and 7.63 (µg/mL) respectively.

Page 17: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 48

Table 2.5: Comparison of the analytical performance for nanobiosensor and without

nanobiosensor

aLOD =3.3ₓSD/slope

bLOQ = 10ₓSD/slope

2.4.6 Comparative study of MTX-DNA interaction by nanobiosensor

In order to compare the results and hence detect systematic errors between the two

methods, a student t-test was employed to check whether the standard deviations for the

same sample differ significantly (Table 2.6). Since the experimental value of t-test is

higher than the critical, it is concluded that the proposed nanobiosensor technique is more

precise than without nanobiosensor. Table 2.6 shows the statistical comparison between

two methods at various concentration of MTX. Thus, the results obtained from both the

methods were not in agreement, indicating significant difference between two.

Parameters Nanobiosensor Without nanobiosensor

Regression equation (Y)

Slope (b)

Intercept (c)

4.83

2.26

32.82 13.06

Correlation coefficient (r) 0.994 0.842

Limit of Detectiona 1.42 ( µg/mL) 2.51 ( µg/mL)

Limit of Quantitationb 4.36 ( µg/mL) 7.63 (µg/mL)

Page 18: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 49

Table 2.6: Statistical Comparison between two methods

MTX

concentration

(ng/ml)

Nanobiosensor Without

nanobiosensor

t-test

∆E SD ∆E SD tExperimental tCritical

100 28.67 2.3 9.67 2.3 10.10 2.132

75 22.66 0.58 8.33 0.58 30.48 2.132

50 17.66 2.08 8.33 0.58 7.46 2.132

25 13.67 0.58 5 1.73 8.25 2.132

2.4.7 Confirmation Of MTX-DNA Adduct By UV-Spectroscopy

The MTX-DNA adduct obtained from potentiometric measurement was validated by UV

spectroscopy. In Figure 2.8, the pure DNA shows absorbance at 202 and 259.5 nm, while

MTX shows peak at 222.5 and 288 nm. The MTX-DNA adduct shows peak at 272.5 nm.

The major shifting of peak from 288 to 272.5 nm indicates that the formation of MTX-

DNA adduct. Similar results were obtained in all MTX concentration series.

Page 19: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 50

Figure 2.8: Validation of MTX-DNA adduct by UV-spectroscopy

2.4.8 Confirmation Of MTX-DNA Adduct By FT-IR Spectroscopy

The MTX-DNA adduct was also validated by FT-IR spectroscopy. The resulting solution

obtained from potentiometric measurement was determined by FT-IR spectroscopy

which confirms the binding of MTX to DNA. Only the spectral interval range between

1800 and 850 cm-1

was examined. The IR peaks of DNA, MTX and MTX-DNA

interaction are shown in Table 2.7 (Figure 2.9).

The major spectral changes (intensity or shifting) of several prominent DNA in-plane

vibrations related to the G-C, A-T bases and the backbone phosphate modes at 1710

(mainly G), 1662 (mainly T), 1610 (A), 1492 (mainly C), and 1226 (asymmetric PO2

vibration) and 1088 cm-1

(PO2 symmetric vibration) 22-24

. However, some perturbations of

DNA vibrations were observed in this study. The guanine band at 1710 cm-1 shifted

toward a lower frequency at 1710, whereas the adenine and cytosine shows very weak

band at 1610 and 1492 cm-1 respectively (Figure 2.9).

Page 20: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 51

Figure 2.9: Confirmation of MTX-DNA adduct by FT-IR spectroscopy (A: pure DNA,

B: MTX, C: MTX-DNA)

Also, PO2 vibrations shifted towards lower frequency at 1076 cm-1

. The peaks at 991 and

955 cm-1

were observed in case of P-O and Asymmetric O-P-O stretching, respectively.

DNA backbone peaks at 941, 928, 902, 893 and 854 cm-1

were observed and are well in

agreement with results reported by Yan Mao and his team [23].

Page 21: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 52

Table 2.7: Wavenumbers (in cm-1

) of DNA, MTX and MTX-DNA interaction

DNA

(cm-1)

MTX

(cm-1)

MTX-DNA

adduct

(cm-1)

Assignments

1700 - - C=O of guanine

1662 - 1644 C=C, C=N in the base plane

1583 - 1553 C=C, C=N in the base plane

1492 - - Cytosine

1076 1055 1059 Symmetric PO2- stretching

991 992 993 P-O or C-O backbone stretch

955 962 956 Asymmetric O-P-O

941 948 947 DNA backbone

928 936 933 DNA backbone

902 927 921 DNA backbone

The MTX-DNA adduct was confirmed for all resulting solution obtained from

potentiometric measurement. Disappearance of peak indicate the breakage of DNA, while

shifting of peaks indicates the formation of MTX-DNA adduct. From Figure 2.9 and

Table 2.7, it is clear that, the MTX breaks DNA and forms complex with DNA. In all

case studies, similar results were obtained.

2.4.9 Confirmation of MTX-DNA adduct by Zeta-potential measurement

Zeta potential measurements confirm the formation of MTX-DNA adduct. Figure 2.10

shows the mean zeta-potential of pure DNA which was found to be -31.1 mV. MTX

showed positive potential 0.0226 mV. The MTX-DNA adduct showed potential at -17.6

mV. Thus, this suggests that the formation of drug-DNA adduct.

Page 22: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 53

Figure 2.10: Zeta-potential of DNA, MTX, and MTX-DNA adduct

Page 23: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 54

2.5 CONCLUSION

This work has shown experimental evidence of interaction of MTX with DNA and may

contribute to the understanding of the mechanism of action of this drug with DNA. It was

observed that drug-DNA interaction occurring with time which suggests that MTX

intercalates with DNA and slowly interacts with it causing some breaking of the

hydrogen bonds. It is interesting to note that the nanobiosensor experiments suggest

preferential interaction of MTX with DNA at very low concentration. Without surface

modified electrode does not seem to be suitable for the monitoring MTX-DNA

interaction at low concentrations of MTX. The sensor revealed high sensitivity and

selectivity. Formation of MTX-DNA adduct was validated by spectroscopic analysis and

are well in agreement with reported studies. Overall, we developed nanobiosensor which

allows non-invasive, real-time monitoring of the Drug-DNA interaction changes by

measuring potential at sensor interface which can be crucial biosensor in molecular

toxicology and drug discovery pipelines.

Page 24: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 55

2.6 REFERENCES

1. Maxwell D, Taylor MJ, Nie S, Self-Assembled Nanoparticle Probes for Recognition

and Detection of Biomolecules, J of American Chem. Society., 2002;124:9606–

9612.

2. Xiao Y, Ju H, Chen H, Hydrogen peroxide sensor based on horseradish peroxidase-

labeled Au colloids immobilized on gold electrode surface by cysteamine monolayer,

Anal. Chimica Acta 1999;392:73-82.

3. Jia J, Wang B, Wu A, Cheng G, Li Z, Dong S, A Method to Construct a Third-

Generation Horseradish Peroxidase Biosensor: Self-Assembling Gold Nanoparticles

to Three-Dimensional Sol−Gel Network, Anal. Chem., 2002;74:2217-2223.

4. Ningning Z, Zhu C, Pingang H, Yuzhi F, Electrochemical DNA biosensors based on

platinum nanoparticles combined carbon nanotubes, Anal. Chimica Acta.,

2005;545:21–26.

5. He P, Hu N, Electrocatalytic Properties of Heme Proteins in Layer-by-Layer Films

Assembled with SiO2 Nanoparticles, Electroanalysis., 2004;16:1122–1131.

6. Qhobosheane M, Santra S, Zhang P, Tan W, Biochemically functionalized silica

nanoparticles, Analyst., 2001;126:1274-1278.

7. Martin P, Samuel S, Izumi I, Jie T, Electrochemical nanobiosensors, Sens. Actuators

B., 2007;123:1195–1205.

8. Luo X, Xu J, Zhao W, Chen H, Glucose biosensor based on ENFET doped with SiO2

nanoparticles, Sens. Actuators B., 2004;97:249–255.

9. Chen ZJ, Ou XM, Tang FQ, Jiang L, Effect of nanometer particles on the

adsorbability and enzymatic activity of glucose oxidase, Colloids Surf. B: Biointerf.,

1996;7:173–179.

10. Hilliard LR, Zhao X, Tan W, Immobilization of oligonucleotides onto silica

nanoparticles for DNA hybridization studies. Analy. Chimica Acta., 2002;470:51–56.

11. Yousef EM, Bathaie SZ, Kazemi SH, Mousavi MF, DNA immobilization on a

polypyrrole nanofiber modified electrode and its interaction with salicylic

acid/aspirin, Anal. Biochem., 2011;411:176-184.

Page 25: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 56

12. Zhang GJ, Luo ZH, Huang MJ, Tay GK, Lim EA, Morpholino-functionalized silicon

nanowire biosensor for sequence-specific label-free detection of DNA, Biosen.

Bioelectron., 2011;25:2447–2453.

13. Ryu SW, Kim CH, Han JW, Kim CJ, Jung C, Park HJ, Choia YK, Gold nanoparticle

embedded silicon nanowire biosensor for applications of label-free DNA detection,

Biosen. Bioelectron., 2010;2:2182–2185.

14. Robinson JW, Skelly Frame EM, Frame GM, Undergraduate Instrumental Analysis,

Marcel Dekker, New York, 2006.

15. Wang Y, Chen Q, Zeng X, Potentiometric biosensor for studying hydroquinone

cytotoxicity in vitro, Biosen. Bioelectron., 2010;25:1356–1362.

16. Thurston D, Chemistry and Pharmacology of Anti-cancer drugs, CRC press, Boca

Raton, 2007.

17. Oliveira Brett AM, Macedo TRA, Raimundo D, Marques MH, Serrano SHP,

Voltammetric behaviour of mitoxantrone at a DNA-biosensor, Biosens. Bioelectron.

1998;13:861-867.

18. Hajihassan H, Rabbani-Chadegani A, Interaction of mitoxantrone, as an anticancer

drug, with chromatin proteins, core histones and H1, in solution, Int. J. of Bio.

Macromol., 2011;48:87-92.

19. Smart RC, Hodgson E, Molecular and biochemical toxicology, John Wiley & Sons,

US, 2008.

20. Rossi LM, Shi L, Quina FH, Rosenzweig Z, Stöber synthesis of monodispersed

luminescent silica nanoparticles for bioanalytical assays, Langmuir, 2005;21:4277-

4280.

21. Stöber W, Fink A, Bohn E, Controlled growth of monodisperse Silica spheres in the

Micron size range, J Coll. Inter. Sci., 1968;26:62-69.

22. Arakawa H, Ahmad R, Naoui M, Tajmir-Riahi H, A Comparative Study of Calf

Thymus DNA Binding to Cr(III) and Cr(VI) Ions Evidence For The Guanine N-7-

Chromium-Phosphate Chelate Formation, The J of Bio. Chem., 2000;275:10150–

10153.

Page 26: SiO BASED NANOBIOSENSOR MONITORING MITOXANTRONE …shodhganga.inflibnet.ac.in/bitstream/10603/13787/9/09_chapter 2.pdf · polypyrrole (PPy) nanofiber modified electrode to monitor

Chapter 2

Institute of R & D, GFSU, Gandhinagar, Gujarat 57

23. Mao Y, Daniel LN, Whittaker N, Saffiotti U, DNA binding to crystalline silica

characterized by Fourier-Transform Infrared Spectroscopy, Environ. Health Persp.,

1994;104:167-171.

24. Nafisi S, Ghoreyshi KF, Azizi E, Zebarjad E, Tajmir-Riahi H, Interaction of

zanamivir with DNA and RNA: Models for drug–DNA and drug–RNA bindings, The

J of Mol. Stru., 2007;830:182-187.