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Sequence/Structure Alignment Resources from NCBI Steve Bryant Protein Data Bank Rutgers University November 19, 2005
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Sequence/Structure Alignment Resources from NCBI

Mar 15, 2016

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Sequence/Structure Alignment Resources from NCBI. Steve Bryant Protein Data Bank Rutgers University November 19, 2005. Sequence / Structure Alignment Resources from NCBI…. … Structure look-up tools … Structure-structure alignments … Alignment tools in client software - PowerPoint PPT Presentation
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Page 1: Sequence/Structure Alignment Resources from NCBI

Sequence/Structure Alignment Resources from NCBI

Steve Bryant

Protein Data BankRutgers University

November 19, 2005

Page 2: Sequence/Structure Alignment Resources from NCBI

… Structure look-up tools

… Structure-structure alignments

… Alignment tools in client software

… Conserved domain family alignments *

… Domain subfamily analysis tools *

Sequence / Structure Alignment Resources from NCBI…

Page 3: Sequence/Structure Alignment Resources from NCBI

Entrez Search Engine ...

Page 4: Sequence/Structure Alignment Resources from NCBI

Entrez Retrieval System ...

Protein Sequences

MEDLINEAbstracts

BLASTSequenceSimilarity

Protein Sequences

3D Structures

Nucleotide Sequences

Term FrequencyStatistics

VAST StructureSimilarity

BLASTSequenceSimilarity

1,500,000 users ...60,000,000 hits ...

… per day

Page 5: Sequence/Structure Alignment Resources from NCBI

Entrez Search Engine ...

Page 6: Sequence/Structure Alignment Resources from NCBI

Protein Sequence Records ...

Page 7: Sequence/Structure Alignment Resources from NCBI

PubMed Links ...

Page 8: Sequence/Structure Alignment Resources from NCBI

PubMed Links ...

Page 9: Sequence/Structure Alignment Resources from NCBI

Related Structure Links ...

Page 10: Sequence/Structure Alignment Resources from NCBI

Related Structure Links ...

Page 11: Sequence/Structure Alignment Resources from NCBI

Related Structure Link ...

Page 12: Sequence/Structure Alignment Resources from NCBI

Related Structure Alignment ...

Page 13: Sequence/Structure Alignment Resources from NCBI

Related Structure Alignment …

Cn3D

Page 14: Sequence/Structure Alignment Resources from NCBI

Related Structure Links ...

Page 15: Sequence/Structure Alignment Resources from NCBI

Related Structure Link ...

Page 16: Sequence/Structure Alignment Resources from NCBI

Structure Neighbors of 2A14 ...

Page 17: Sequence/Structure Alignment Resources from NCBI

Structure Neighbor Alignment …

Cn3D

Page 20: Sequence/Structure Alignment Resources from NCBI

Leptin Threading Prediction, 1995 …

Page 22: Sequence/Structure Alignment Resources from NCBI

… Structure look-up tools

… Structure-structure alignments

… Alignment tools in client software

… Conserved domain family alignments *

… Domain subfamily analysis tools *

Sequence / Structure Alignment Resources from NCBI…