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Scientific Figure Design v2018-02 Simon Andrews, Anne Segonds-Pichon, Boo Virk, Jo Montgomery [email protected] [email protected] [email protected] [email protected]
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Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Aug 14, 2018

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Page 1: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Scientific Figure Design

v2018-02

Simon Andrews, Anne Segonds-Pichon, Boo Virk, Jo [email protected]

[email protected]@babraham.ac.uk

[email protected]

Page 2: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Figures are the way your science is presented to an audience

Page 3: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

What this course covers…

• Theory of data visualisation

– Why do some figures work better than others?

• Ethics of data representation

• Elements of graphic design

• Editing bitmap images in GIMP

• Vector editing and compositing in Inkscape

• Journal submissions

Page 4: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

What this course doesn’t cover…

• How to draw graphs in specific programs– R Introduction

– Statistics with R

– Statistics with GraphPad

– Plotting with R/ggplot

• Network representations

• Spatial data representations

Page 5: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Timetable

• Morning

– Introduction

– Data Visualisation Theory

• Coffee

– Data Representation Practical

– Ethics and plots talk

– Design theory talk

• Afternoon

– GIMP Tutorial

– GIMP Practical

• Coffee

– Inkscape Tutorial

– Inkscape Practical

– Final practical

Page 6: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Collect Raw DataProcess and Filter

DataClean Dataset

Exploratory Analysis

Generate Conclusion

Data Visualisation Process

Clean Dataset

Exploratory Analysis

Generate Conclusion

Page 7: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Exploratory visualisation

• Understand your data

• Multiple ways to present and summarise

• Crude representations

• Interactive

• Not intended for final publication

– Can be adapted for publication

Page 8: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

C o n tr o l T r e a tm e n t 1 T r e a tm e n t 2 T r e a tm e n t 3

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C o n tr o l T r e a tm e n t 1 T r e a tm e n t 2 T r e a tm e n t 3

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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quency

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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quency

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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quency

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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quency

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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Histogram of log2(full.counts[[x]])

log2(full.counts[[x]])

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Histogram of log2(full.counts[[x]])

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Page 9: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Reference visualisation

• Using your data as a resource

• Allows users to look up data of interest

• Tabular / Configurable

• Interactive

Page 10: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical
Page 11: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

Illustrative visualisation

• Intended to convey a specific point

• Carefully chosen subset of data

• Optimised presentation

• Good design

• Used for figures in papers

Page 12: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical
Page 13: Scientific Figure Design - Babraham Bioinf · Scientific Figure Design v2018-02 ... •Vector editing and compositing in Inkscape ... –Inkscape Tutorial –Inkscape Practical

What makes a good figure?

• Has a clear message– Helps to tell a story– Adds to the text, and links to it

• Is focused– Don’t confuse one message with another

• Is easy to interpret correctly– Good data visualisation– Good design

• Is an honest and true reflection of the data