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Scaffold PTM 2.0
• Brief intro to Scaffold PTM
• What’s new in 2.0!– Global motif analysis (known/unknown)– Quantification at modification sites– Localization filtering
y1 – y5 b12 – b16
Enter Scaffold PTM
Motifs
Motif View
Motif View
Motif View
Motif View
Motif View
Motif View
Motif Scores
Motif Scores
• N = # modified sites in data set• n = # AA combo in data set• p = prior (percentage of AA combo in FASTA)
• What’s new in 2.0!– Global motif analysis (known/unknown)– Quantification at modification sites– Localization filtering– Loads of bug fixes and minor enhancements