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SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Dec 14, 2015

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Kayden Greenly
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Page 1: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.
Page 2: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

SABBI Barley Program

● SMART breeding (Selection with Markers and Advanced Reproductive Technologies)

● Conventional breeding● Doubled haploid production ● Marker assisted selection

Page 3: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Program Goal

Develop SAB brand aligned barley varietieswith superior:

● Yield potential● Stability● Agronomic characteristics● Disease resistance● Malting quality● Brewing qualityfor the Southern Cape dry land area and the Northern Cape irrigation areas

Page 4: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Southern Cape: Dry land ± 150 000 tons

Northern Cape: Irrigation ± 70 000 tons

Barley producing areas of South Africa

Page 5: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Research facility near Caledon in Southern Cape

Page 6: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Trial and F-generation material under irrigation

Page 7: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Phase 1: CrossingCollect germplasmMaking crosses

Phase 2: Selection in F-generationsPhase 3: Trial evaluationPhase 4: Commercial evaluationPhase 5: Seed production and

maintenance

Phase 1: CrossingCollect germplasmMaking crosses

Phase 2: Selection in F-generationsPhase 3: Trial evaluationPhase 4: Commercial evaluationPhase 5: Seed production and

maintenance

Conventional breeding Program

Page 8: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Limited qualityevaluation

Micro malting

Experimental release

Final release

4000 lines

SABBI Barley Program

Page 9: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Collect germ plasmCollect germ plasmGerm plasm are collected from allover the world to address the deficiencies in the program

Germ plasm are collected from allover the world to address the deficiencies in the program

Conventional breeding Program

Phase1: Crossing

Page 10: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Most important characteristics

Agronomic

characteristics Brewing

quality

Malt quality

• Yield• Plumpness• Kernel nitrogen• Maturity • Straw length• Straw strength• Disease resistance

• Fermentability • Brewing yield• Starch gelatinisation temp• Filterability• Haze potential• Taste stability

• Extract • Kolbach Index• FAN• Diastatic activity

•Viscosity•AAL•Beta glucan

Page 11: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Making crossesMaking crosses

Conventional breeding Program

Phase1: Crossing

Page 12: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Plant breeding parents

Page 13: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Cross breeding parents

Page 14: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Phase 2: Selection in F-generationsPhase 2: Selection in F-generations

Conventional breeding Program

Page 15: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Conventional breeding Program

Phase 2: Selection in F-generations

Page 16: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Limited qualityevaluation

Micro malting

Experimental release

Final release

4000 lines 5000 lines 4000 lines 3000 lines

SABBI Barley Program

Page 17: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Single plant selection in wide rows from F2 to F4 generation for characteristics like tillering, straw strength and height, maturity and disease resistance; single row selection in F5 on same characteristics to be proceeded to Evaluation phase

Page 18: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Conventional breeding Program

Phase 3: Trial evaluation

Page 19: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Experimental release

Final release

1000 lines 1 location180 lines 2 locations46 lines 2 locations25 lines 12 locations25 lines 12 locations

Micro malting

SABBI Barley Program

Page 20: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Plant blocks at different localities and evaluate for yield, plumpness, kernel nitrogen, germination energy, disease resistance and malting quality (Extract, KI, Viscosity, AAL, beta-glucans, FAN, DP)

Page 21: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Conventional breeding Program

Phase 4: Commercial evaluation

Page 22: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Experimental release

Final release

SABBI Barley Program

Page 23: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

After experimental release varieties are planted by commercial producers for SABM and SAB to evaluate for malting and brewing quality for three years:

Year 1, 350t Year 2, 1000tYear 3, 3000t

Page 24: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Conventional breeding Program

Phase 5: Seed production

Page 25: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Experimental release

Final release

SABBI Barley Program

Page 26: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

In the Southern Cape Breeder and Foundation seed are produced. Foundation seed are sold to Agricultural businesses who produce Certified seed to be sold to the producers. Under irrigation we are involved in the whole seed chain.

Page 27: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Doubled Haploid Production

Marker Assisted Selection

Doubled Haploid Production

Marker Assisted Selection

Extension in programExtension in program

SABBI Barley Program

Page 28: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

• Doubled Haploid production

• Marker Assisted Selection

• Doubled Haploid production

• Marker Assisted Selection

SABBI Barley Program

Extension in program

Page 29: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

CrossesF1F2F3F4F5Elite 1Elite 2Elite 3LE 1LE 2LE 3LE 4LE 5

Comm Yr 1Comm Yr 2Comm Yr 3Comm Yr 4Seed multiplicationCommercial production

123456789101112131415161718

Limited qualityevaluation

Micro malting

Experimental release

Final release

Doubled Haploids

Marker assisted selection

SABBI Barley Program

Page 30: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Doubled haploid production

● The production of true breeding lines within one year to shorten the release time of new cultivars with three to four years

● F1 seed (and sometimes F2 seed) from selected crosses are used to produce Doubled haploid plants

Page 31: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Double haploid productionMicrospore methodMicrospore method

Page 32: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Double haploid production

Anthers plated on mediumAnthers plated on medium Calli develop from anthersCalli develop from anthers Calli transplanted onto regeneration medium anddoubled haploid plantsdevelop

Calli transplanted onto regeneration medium anddoubled haploid plantsdevelop

Anther culture methodAnther culture method

Page 33: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Marker assisted selection

● The early identification of specific characteristics in the progeny of a specific cross.

● Especially important for characteristics which is difficult to identify or measure in a conventional way

● Indirect selection process through the ID of a unique DNA sequence occurring in proximity to a desired gene, by molecular techniques

● Contracted to CENGEN

Page 34: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.

Marker Assisted SelectionTrait Chromosome Origin

Grain brightness 3H Franklin

Grain brightness 2H Harrington

Malt extract, diastatic power, α-amylase, free α-amino nitrogen, β-glucan

1H Alexis

α-amylase 5HL Harrington

Diastatic power 4HL Harrington

Diastatic power 5HL Harrington

Wort content (sucrose) 4HL Derkado

Example of markers developed for specific traits Example of markers developed for specific traits

Page 35: SABBI Barley Program ●SMART breeding (Selection with Markers and Advanced Reproductive Technologies) ●Conventional breeding ●Doubled haploid production.