Revolutionizing plant and animal genomics....Revolutionizing plant and animal genomics. With the most extensive toolset for a wide variety of applications and species, Illumina sequencing

Discover. Develop. Deploy.Revolutionizing plant and animal genomics.

Discover. Reveal genomic influences.

Develop. Design tools to leverage new discoveries.

Deploy.Improve health, yields, and growth rates.

Healthier herds

Improved genetic merit

Greater disease and pest resistance

Increased yield

Enhanced stress tolerance

Revolutionizing plant and animal genomics. With the most extensive toolset for a wide variety of applications and species, Illumina sequencing and genotyping technologies touch every step of the agricultural genomics (agrigenomics) pipeline. Enhancing knowledge of the genetic foundations of production, reproduction, and health.

Empowered by continuous content discovery and deep collaboration, Illumina works with consortia comprised of thought leaders to drive the development of genotyping arrays to support research and commercial applications in more than 25 species. Results are deployed to accelerate smart breeding practices—helping meet the world’s growing demand for food, fiber, feed, and fuel.

Advancing you to the next level of productivity. Breed success. Harvest results.

Agrigenomics pipeline. Innovation in every step. The Illumina bovine genotyping array portfolio demonstrates how we support each

segment of the agrigenomics value chain. From discovery through deployment, we

are committed to developing products for a full range of research and commercial

genotyping applications, driven by a collaborative consortia process.

BovineSNP50. Determine breeding value.

With more than 50,000 SNPs, this widely-adopted agrigenomics BeadChip has

helped genotype hundreds of thousands of animals, identifying genotype-phenotype

associations to determine genomic breeding value.

BovineHD. Predict genetic merit with the highest accuracy.

Through next-generation sequencing, 777,000 SNPs were identified to create this

powerful BeadChip, which is used for cross-breed analysis, assessing the genetic

merit of elite bulls, and accelerating discovery of causal mutations.

BovineLD. Screen the entire herd for less.

With nearly 7,000 SNPs, this BeadChip supports a broad range of applications including

genomic selection, parentage, breed identification, and traceability—cost-effectively

extending the application of genomic information to more animals than ever before.

The Discover, Develop, and Deploy Story

Next-generation sequencing empowers researchers to discover new content. Consortia select SNPs from this

content, fueling the development of new arrays specifically designed to meet industry needs. These arrays can

be deployed to select for improved traits in any species. Shown above with livestock.

Discover. Develop. Deploy.

BovineSNP50

~50K SNPs

BovineHD

~777K SNPs

BovineLD

~7K SNPs

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Extensive toolset. Accelerating analysis. Measure genetic variation on any scale, for any

species. Find markers for the most desirable

traits. Perform a variety of research and

commercial applications, from whole-genome

association to marker-assisted breeding.

Illumina offers the most extensive toolset to

explore every area of genetic analysis, delivering

the highest data quality and the flexibility to

customize your research.

With a platform for a wide breadth of

applications, from sequencing to genotyping.

From the combined technology of HiScanSQ™,

to the real-time precision of Eco™, to the fully

integrated ecosystem of the MiSeq® personal

sequencer. The MiSeq system is powered

by proven TruSeq® chemistry, and offers fast

results, simple workflows, and the highest

quality data for the broadest number

of applications, including de novo

and resequencing of small genomes,

library QC, and RNA-Seq.

For genotyping, choose from a selection

of consortia-developed BeadChips. Enhance

your analyses by adding on custom genomic

content from Illumina, consortia, or your own

research. For a fully custom solution, use the

Illumina iSelect® BeadChip.

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BeadArray

BeadXpress®

Eco

iScan

VeraCode®

Real-Time PCR

Sequencing + BeadArray™

Sequencing

HiScanSQ

TruSeq Chemistry

150 Gb/run (2 x 100 bp)

1.5 billion paired reads/run

GoldenGate® + Infinium®

96 to 1M markers

Infinium

3K to 1M markers

Open Platform

48 samples

600 Gb/run (2 x 100 bp) 6 billion paired reads/run

300 Gb/run (2 x 100 bp) 3 billion paired reads/run

95 Gb/run (2 x 150 bp)640 million paired reads/run

1 Gb/run (2 × 150 bp) 6.8 million paired reads/run

GoldenGate

96 to 3K markers

GoldenGate

48 to 384 markers

ASPE

1 to 72 markers

HiSeq® 2000 / HiSeq®1000

Genome AnalyzerIIx

MiSeq

Collaborate. Reduce costs. Get results. In a consortium, members work together privately or publicly to advance the

collective understanding of agrigenomics and improve individual economics.

Join or start a consortium, and you will work with other researchers to create

comprehensive genotyping arrays and take advantage of economies of scale.

Genotyping panels from 3K-1M SNPs are based on industry-leading InfiniumHD

chemistry and BeadArray technology, and can be sold publicly or remain

private. Illumina coordinates—empowering you to expand your reach, enhance

collaboration, and cost-effectively advance your research.

Selected consortia-developed arrays.

Innovate with us. To join a consortium or start your own,

email [email protected]

Customize your studies and differentiate your services. Add custom content to any Illumina Infinium array.

For a complete list of available consortia-developed arrays, visit www.illumina.com/agriculture.

Bovine Goat Ovine

Apple Maize Tomato Vitis/Grapevine Potato Wheat

Porcine Canine Chicken

Discover. Develop. Deploy.

Learn more at www.illumina.com/agriculture

FOR RESEARCH USE ONLY© 2008-2012 Illumina, Inc. All rights reserved.Illumina, illuminaDx, BaseSpace, BeadArray, BeadXpress, cBot, CSPro, DASL, DesignStudio, Eco, GAIIx, Genetic Energy, Genome Analyzer, GenomeStudio, GoldenGate, HiScan, HiSeq, Infinium, iSelect, MiSeq, Nextera, Sentrix, SeqMonitor, Solexa, TruSeq, VeraCode, the pumpkin orange color, and the Genetic Energy streaming bases design are trademarks or registered trademarks of Illumina, Inc. All other brands and names contained herein are the property of their respective owners. Pub No. 370-2008-027 Current as of 03 January 2012

Learn more at www.illumina.com/agriculture

www.illumina.com