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-0.4 -0.2 0.0 0.2 0.4 0.6 0.8 -0.4 -0.2 0.0 0.2 0.4 0.6 0.8 Replication #10 PC1 (86.01%) PC2 (10.37%) amelonado.18 criollo22.18 eet64.18 herrania ics01.18 ics06.18 ics39.18 pentagonum.18 scavina6 stahel.18 tgrandiflorum.18 -2 0 2 4 -2 0 2 4 EnSpm Harbinger hAT INE/L1 R/Copia R/Gypsy /Unknown ariner/Tc1 Mutator
49

Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

May 20, 2018

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Page 1: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #10

PC1 (86.01%)

PC

2 (1

0.37

%)

amelonado.18

criollo22.18

eet64.18

herrania.18ics01.18

ics06.18

ics39.18

pentagonum.18

scavina6

stahel.18

tgrandiflorum.18

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 2: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #11

PC1 (87.38%)

PC

2 (9

.97%

)

amelonado.19

criollo22.19

eet64.19

herrania.19ics01.19

ics06.19

ics39.19pentagonum.19

scavina6

stahel.19

tgrandiflorum.19

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 3: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #12

PC1 (87.16%)

PC

2 (9

.77%

)

amelonado.2

criollo22.2

eet64.2

herrania.2

ics01.2

ics06.2

ics39.2

pentagonum.2

scavina6

stahel.2

tgrandiflorum.2

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 4: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #13

PC1 (87.76%)

PC

2 (9

.6%

)

amelonado.20

criollo22.20

eet64.20

herrania.20

ics01.20

ics06.20

ics39.20pentagonum.20

scavina6

stahel.20

tgrandiflorum.20

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hAT

LINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1

Mutator

Page 5: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #14

PC1 (87.64%)

PC

2 (9

.51%

)

amelonado.21

criollo22.21

eet64.21

herrania.21

ics01.21ics06.21

ics39.21

pentagonum.21

scavina6

stahel.21

tgrandiflorum.21

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 6: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #15

PC1 (88.03%)

PC

2 (9

.39%

)

amelonado.22

criollo22.22

eet64.22

herrania.22ics01.22

ics06.22

ics39.22pentagonum.22

scavina6

stahel.22

tgrandiflorum.22

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 7: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #16

PC1 (87.61%)

PC

2 (9

.06%

)

amelonado.23

criollo22.23

eet64.23

herrania.23ics01.23

ics06.23

ics39.23

pentagonum.23

scavina6

stahel.23

tgrandiflorum.23

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 8: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #17

PC1 (87.81%)

PC

2 (9

.35%

)

amelonado.24

criollo22.24

eet64.24

herrania.24ics01.24

ics06.24

ics39.24

pentagonum.24

scavina6

stahel.24

tgrandiflorum.24

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 9: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #18

PC1 (87.61%)

PC

2 (9

.33%

)

amelonado.25

criollo22.25

eet64.25

herrania.25ics01.25

ics06.25

ics39.25

pentagonum.25

scavina6

stahel.25

tgrandiflorum.25

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 10: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #19

PC1 (87.51%)

PC

2 (9

.85%

)

amelonado.26

criollo22.26

eet64.26

herrania.26ics01.26

ics06.26

ics39.26

pentagonum.26

scavina6

stahel.26

tgrandiflorum.26

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 11: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #1

PC1 (88.43%)

PC

2 (8

.86%

)

amelonado.1

criollo22.1

eet64.1

herrania.1ics01.1

ics06.1

ics39.1

pentagonum.1

scavina6

stahel.1

tgrandiflorum.1

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 12: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #20

PC1 (87.97%)

PC

2 (9

.35%

)

amelonado.27

criollo22.27

eet64.27

herrania.27

ics01.27

ics06.27

ics39.27pentagonum.27

scavina6

stahel.27

tgrandiflorum.27

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 13: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #21

PC1 (87.8%)

PC

2 (9

.57%

)

amelonado.28

criollo22.28

eet64.28

herrania.28

ics01.28

ics06.28

ics39.28

pentagonum.28

scavina6

stahel.28

tgrandiflorum.28

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 14: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #22

PC1 (88.29%)

PC

2 (8

.75%

)

amelonado.29

criollo22.29

eet64.29

herrania.29ics01.29

ics06.29

ics39.29pentagonum.29

scavina6

stahel.29

tgrandiflorum.29

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 15: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #23

PC1 (87.78%)

PC

2 (9

.46%

)

amelonado.3

criollo22.3

eet64.3herrania.3

ics01.3

ics06.3

ics39.3

pentagonum.3

scavina6

stahel.3

tgrandiflorum.3

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 16: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #24

PC1 (88.21%)

PC

2 (9

.15%

)

amelonado.30

criollo22.30

eet64.30

herrania.30ics01.30

ics06.30

ics39.30pentagonum.30

scavina6

stahel.30

tgrandiflorum.30

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 17: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #25

PC1 (88.53%)

PC

2 (8

.99%

)

amelonado.31

criollo22.31

eet64.31

herrania.31ics01.31

ics06.31

ics39.31

pentagonum.31

scavina6

stahel.31

tgrandiflorum.31

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 18: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #26

PC1 (86.81%)

PC

2 (1

0.49

%)

amelonado.32

criollo22.32

eet64.32

herrania.32ics01.32

ics06.32

ics39.32

pentagonum.32

scavina6

stahel.32

tgrandiflorum.32

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 19: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #27

PC1 (87.5%)

PC

2 (9

.81%

)

amelonado.33

criollo22.33

eet64.33

herrania.33ics01.33

ics06.33

ics39.33pentagonum.33

scavina6

stahel.33

tgrandiflorum.33

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 20: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #28

PC1 (87.81%)

PC

2 (9

.51%

)

amelonado.34

criollo22.34

eet64.34

herrania.34ics01.34

ics06.34

ics39.34

pentagonum.34

scavina6

stahel.34

tgrandiflorum.34

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 21: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #29

PC1 (87.88%)

PC

2 (9

.1%

)

amelonado.35

criollo22.35

eet64.35

herrania.35ics01.35

ics06.35

ics39.35

pentagonum.35

scavina6

stahel.35

tgrandiflorum.35

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 22: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #2

PC1 (87.27%)

PC

2 (1

0.18

%)

amelonado.10

criollo22.10

eet64.10herrania.10ics01.10

ics06.10

ics39.10pentagonum.10

scavina6

stahel.10

tgrandiflorum.10

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 23: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #30

PC1 (87.35%)

PC

2 (9

.58%

)

amelonado.36

criollo22.36

eet64.36

herrania.36ics01.36

ics06.36

ics39.36

pentagonum.36

scavina6

stahel.36

tgrandiflorum.36

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 24: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #31

PC1 (87.13%)

PC

2 (1

0.18

%)

amelonado.37

criollo22.37

eet64.37

herrania.37ics01.37

ics06.37

ics39.37pentagonum.37

scavina6

stahel.37

tgrandiflorum.37

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 25: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #32

PC1 (87.85%)

PC

2 (9

.4%

)

amelonado.38

criollo22.38

eet64.38

herrania.38ics01.38

ics06.38

ics39.38pentagonum.38

scavina6

stahel.38

tgrandiflorum.38

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 26: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #33

PC1 (88.04%)

PC

2 (9

.53%

)

amelonado.39

criollo22.39

eet64.39

herrania.39ics01.39

ics06.39

ics39.39

pentagonum.39

scavina6

stahel.39

tgrandiflorum.39

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 27: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #34

PC1 (87.47%)

PC

2 (9

.6%

)

amelonado.4

criollo22.4

eet64.4

herrania.4ics01.4

ics06.4

ics39.4pentagonum.4

scavina6

stahel.4

tgrandiflorum.4

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 28: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #35

PC1 (87.27%)

PC

2 (1

0.09

%)

amelonado.40

criollo22.40

eet64.40

herrania.40ics01.40

ics06.40

ics39.40

pentagonum.40

scavina6

stahel.40

tgrandiflorum.40

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 29: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #36

PC1 (87%)

PC

2 (9

.92%

)

amelonado.41

criollo22.41

eet64.41

herrania.41ics01.41ics06.41

ics39.41

pentagonum.41

scavina6

stahel.41

tgrandiflorum.41

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 30: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #37

PC1 (87.26%)

PC

2 (1

0%)

amelonado.42

criollo22.42

eet64.42

herrania.42ics01.42

ics06.42ics39.42

pentagonum.42

scavina6

stahel.42

tgrandiflorum.42

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hAT

LINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1

Mutator

Page 31: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #38

PC1 (87.76%)

PC

2 (9

.44%

)

amelonado.43

criollo22.43

eet64.43

herrania.43ics01.43

ics06.43

ics39.43

pentagonum.43

scavina6

stahel.43

tgrandiflorum.43

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 32: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #39

PC1 (87.43%)

PC

2 (9

.95%

)

amelonado.44

criollo22.44

eet64.44

herrania.44ics01.44

ics06.44

ics39.44pentagonum.44

scavina6

stahel.44

tgrandiflorum.44

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 33: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #3

PC1 (87.22%)

PC

2 (9

.84%

)

amelonado.11

criollo22.11

eet64.11

herrania.11ics01.11

ics06.11

ics39.11

pentagonum.11

scavina6

stahel.11

tgrandiflorum.11

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 34: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #40

PC1 (86.99%)

PC

2 (9

.6%

)

amelonado.45

criollo22.45

eet64.45

herrania.45ics01.45

ics06.45ics39.45

pentagonum.45

scavina6

stahel.45

tgrandiflorum.45

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 35: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #41

PC1 (87.93%)

PC

2 (9

.36%

)

amelonado.46

criollo22.46

eet64.46

herrania.46ics01.46

ics06.46

ics39.46

pentagonum.46

scavina6

stahel.46

tgrandiflorum.46

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 36: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #42

PC1 (87.53%)

PC

2 (9

.97%

)

amelonado.47

criollo22.47

eet64.47

herrania.47

ics01.47

ics06.47

ics39.47

pentagonum.47

scavina6

stahel.47

tgrandiflorum.47

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 37: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #43

PC1 (87.35%)

PC

2 (9

.27%

)

amelonado.48

criollo22.48

eet64.48

herrania.48ics01.48ics06.48

ics39.48

pentagonum.48

scavina6

stahel.48

tgrandiflorum.48

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 38: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #44

PC1 (88.68%)

PC

2 (8

.84%

)

amelonado.49

criollo22.49

eet64.49

herrania.49ics01.49

ics06.49

ics39.49

pentagonum.49

scavina6

stahel.49

tgrandiflorum.49

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 39: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #45

PC1 (87.04%)

PC

2 (9

.89%

)

amelonado.5

criollo22.5

eet64.5

herrania.5ics01.5

ics06.5

ics39.5pentagonum.5

scavina6

stahel.5

tgrandiflorum.5

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 40: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #46

PC1 (87.24%)

PC

2 (9

.98%

)

amelonado.6

criollo22.6

eet64.6

herrania.6ics01.6

ics06.6

ics39.6pentagonum.6

scavina6

stahel.6

tgrandiflorum.6

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 41: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #47

PC1 (88.03%)

PC

2 (9

.49%

)

amelonado.7

criollo22.7

eet64.7 herrania.7

ics01.7

ics06.7

ics39.7

pentagonum.7

scavina6

stahel.7

tgrandiflorum.7

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 42: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #48

PC1 (87.09%)

PC

2 (9

.96%

)

amelonado.8

criollo22.8

eet64.8

herrania.8ics01.8ics06.8

ics39.8pentagonum.8

scavina6

stahel.8

tgrandiflorum.8

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 43: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #49

PC1 (87.06%)

PC

2 (9

.83%

)

amelonado.9

criollo22.9

eet64.9

herrania.9ics01.9

ics06.9

ics39.9pentagonum.9

scavina6

stahel.9

tgrandiflorum.9

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 44: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #4

PC1 (86.46%)

PC

2 (1

0.75

%)

amelonado.12

criollo22.12

eet64.12

herrania.12ics01.12

ics06.12

ics39.12

pentagonum.12

scavina6

stahel.12

tgrandiflorum.12

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 45: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #5

PC1 (86.54%)

PC

2 (1

0.18

%)

amelonado.13

criollo22.13

eet64.13

herrania.13ics01.13

ics06.13

ics39.13

pentagonum.13

scavina6

stahel.13

tgrandiflorum.13

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 46: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #6

PC1 (86.65%)

PC

2 (1

0.25

%)

amelonado.14

criollo22.14

eet64.14

herrania.14ics01.14

ics06.14

ics39.14

pentagonum.14

scavina6

stahel.14

tgrandiflorum.14

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator

Page 47: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #7

PC1 (86.99%)

PC

2 (1

0.08

%)

amelonado.15

criollo22.15

eet64.15

herrania.15ics01.15

ics06.15

ics39.15

pentagonum.15

scavina6

stahel.15

tgrandiflorum.15

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 48: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #8

PC1 (86.95%)

PC

2 (1

0.12

%)

amelonado.16

criollo22.16

eet64.16

herrania.16ics01.16ics06.16

ics39.16pentagonum.16

scavina6

stahel.16

tgrandiflorum.16

−2 0 2 4 6

−2

02

46

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/Unknown

Mariner/Tc1Mutator

Page 49: Replication #10 - Springer Static Content Server10.1186/1471-2164-14... · EnSpm Harbinger hAT LTR/UnknownMariner/Tc1LTR/GypsyLTR/CopiaLINE/L1Mutator −0.4 −0.2 0.0 0.2 0.4 0.6

−0.4 −0.2 0.0 0.2 0.4 0.6 0.8

−0.

4−

0.2

0.0

0.2

0.4

0.6

0.8

Replication #9

PC1 (88.32%)

PC

2 (9

.19%

)

amelonado.17

criollo22.17

eet64.17herrania.17

ics01.17

ics06.17

ics39.17pentagonum.17

scavina6

stahel.17

tgrandiflorum.17

−2 0 2 4

−2

02

4

EnSpm

Harbinger

hATLINE/L1LTR/CopiaLTR/GypsyLTR/UnknownMariner/Tc1Mutator