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Putting chemistry into the hands of students – chemistry made mobile using resources from RSC Antony Williams, Valery Tkachenko, Alexey Pshenichnov, Will Russell and Alex Clark ACS Philadelphia August 2012
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Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

May 10, 2015

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Technology

The increasing prevalence of mobile devices offers the opportunity to provide chemistry students with easy access to a multitude of resources. As a publisher the RSC provides a myriad of content to chemists including an online database of over 26 million chemical compounds, tools for learning spectroscopy and access to scientific literature and other educational materials. This presentation will provide an overview of our efforts to make RSC content more mobile, and therefore increasingly available to chemists. In particular it will discuss our efforts to provide access to chemistry related data of high value to students in the laboratory. It will include an overview of spectroscopy tools for the review and analysis of various forms of spectroscopy data
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Page 1: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Putting chemistry into the hands of students – chemistry made mobile

using resources from RSC

Antony Williams, Valery Tkachenko, Alexey Pshenichnov, Will Russell and Alex Clark

ACS Philadelphia August 2012

Page 2: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Mobilizing Chemistry and “Generation App”

Chemistry has gone Mobile.. Read Publications Access databases Perform calculations Draw chemicals Retrieve reactions Tap into the ever-increasing cloud of data…

For students “Chemistry in the Hand” is to be expected….

Page 3: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Scientific Publishers Apps

Scientific publishers release apps to:

Provide mobile access to content

Search and deliver content to its registered users and engage other possible users

Greater accessibility means greater readership

Revenue generation from the content, not the app

Page 4: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

RSC Mobile

Page 5: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Chemistry World

Page 6: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Data and Chemical Dictionaries

Apps are ideal for delivering reference data

Data collections include Elements Lists of chemicals Drugs and Medications

Public domain data delivered via App interfaces OR via Mobile-Optimized websites. Or Linked…

Page 7: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

RSC|ChemSpider

Page 8: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

RSC|ChemSpider

Structure entry as an entry point to: Calculations (formula, mass) Predictions (local or server-based)

Systematic name generation, logP, pKa, NMR prediction, etc.

Database lookup On device dictionaries (because space doesn’t

matter!) Internet-hosted databases (because the latest

content does matter)

Page 9: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

ChemSpider Mobile Website

Page 10: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

ChemSpider Mobile

Page 11: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Chemical Structure Drawing

Page 12: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Open in Browser

Page 13: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Infrastructure Architecture

Page 14: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

ChemGoggles

Page 15: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

ChemGoggles

Page 16: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Chemical Reactions

Chemical reactions can be served up on mobile

What is available now? Teaching basics of chemical reactions Look-ups against reaction databases Reaction mechanisms

Page 17: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Reaction101http://molmatinf.com/reaction101.html

Page 18: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Reaction Database Look-up

Page 19: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Reaction Database Look-up

Page 20: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Work in Progress – 300k Reactions

Page 21: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Spectra on ChemSpider

Page 22: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

SpectraSchool on Learn Chemistry

Page 23: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Spectral Display Mobile devices with Java support can use

JSpecView

iOS devices require Javascript widgets/HTML5 components

Page 24: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

An open-source and free HTML5 toolkit. For desktop and mobile browsers.

ChemDoodle Web Components

Page 25: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

SpectralGame in the hand

Page 26: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

SpectraSchool http://spectraschool.rsc.org/

Page 27: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry
Page 28: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry
Page 29: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Lab Experiments

Page 30: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry
Page 31: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Sourcing information about SciApps

So, there are lots of Science Apps

Different platforms, different versions

How do you find them?

Where can developers post information about their apps? NOT Wikipedia!

Page 32: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Sourcing information about SciAppshttp://www.scimobileapps.com/

Where can developers post information about their apps? NOT Wikipedia!

iTunes does not segregate based on science

SciMobileApps Wiki…

Page 33: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

There’s a lot of Mobile Chemistry! Categorization of chemistry apps.

Page 35: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Chemistry eBooks

The future of the Chemistry eBook…next year then?

eBooks already link to computational engines 3D rotating molecules are expected – stereoscopic

viewing will become standard? Kinect type interface for a tablet? Interactive graphing – data mine public websites to

include data Direct model generation and prediction And….

Page 36: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Conclusions How many students do not have smartphones? How long before Tablets are primary computers? Chemistry apps are commonplace

The near future is tomorrow…. Federated data access More creative tools for collaboration Hopefully more crowdsourced participation in

mobile-enabled curation and annotation

Page 37: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Acknowledgments RSC Cheminformatics team – Mobile

ChemSpider; Dmitry Ivanov – ChemGoggles Alex Clark – ChemSpider Mobile JC Bradley, Andy Lang, Bob Lancashire –

SpectralGame Kevin Thiesen – ChemDoodle ACD/Labs – SpectraSchool HTML5 NMR Display Daniel Lowe – Chemical reactions dataset Sean Ekins – SciMobileApps wiki

Page 38: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Mobile Tools in Drug Discovery

Page 39: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

New Papers this month

LINK TO ARTICLE

LINK TO ARTICLE

Page 40: Putting chemistry into the hands of students – chemistry made mobile using resources from the Royal Society of Chemistry

Thank you

Email: [email protected] Twitter: ChemConnectorPersonal Blog: www.chemconnector.com SLIDES: www.slideshare.net/AntonyWilliams