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British Journal of Anaesthesia Page 1 of 11
DOI: 10.1093/bja/aeh200
Principles of pharmacogenetics—implications for theanaesthetist
G. Iohom1, D. Fitzgerald2 and A. J. Cunningham1 2*
1Department of Anaesthesia and Intensive Care Medicine, Beaumont Hospital, Dublin 9, Ireland.2Royal College of Surgeons in Ireland, Dublin 2, Ireland
*Corresponding author. E-mail: [email protected]
Br J Anaesth 2004
Keywords: anaesthesia, general; genetic factors, polymorphism; metabolism, poor metabolizers;
metabolism, ultrarapid metabolizers; pharmacogenetics
‘If it were not for the great variability among individuals,
medicine might as well be a science and not an art.’ Sir
William Osler’s observations in 189260 reflect a perception
of medicine over 100 years ago, highlighting the lack of
available objective data to make decisions that are tailored
to individual patients. One hundred years later, scientists are
on the verge of being able to identify inherited differences
between individuals, which may predict each patient’s
response to a particular drug. This ability will have undoubted
benefits in the discovery, development, and delivery of new
medicines. Sir William Osler, if he were alive today, would be
forced to reconsider his view of medicine as an art not
a science.
Pharmacogenetics emerged as a discipline that attempted
to understand the hereditary basis for differences in respons-
iveness or inter-individual variation to therapeutic agents.85
Variation in a drug effect may vary from 2- to 10-fold or 100-
fold, even among members of the same family.35 90 Similar
inter-patient variability is observed in the risk of adverse
effects of a drug or a chemical.85
Pharmacogenetics has been defined as the study of vari-
ability in drug response as a result of heredity factors.52 More
recently, the term ‘pharmacogenomics’ has been introduced.
While the former term is largely used in relation to variants in
genes that influence drug response, the latter refers to changes
in gene expression as a consequence of drug exposure.14 The
value of an understanding of pharmacogenetics for the cli-
nician is to enable optimum therapeutic efficacy; to avoid
toxicity of those drugs whose metabolism is catalysed by
polymorphic isoenzymes; and to contribute to the rational
design of new drugs. Pharmacogenetics and pharmacogeno-
mics cannot be understood without a grasp of basic medical
genetics.
Medical genetics
Anaesthetists traditionally possess a basic knowledge of
medical genetics to understand conditions such as malignant
hyperthermia (MH) and atypical plasma cholinesterase. To
optimally use anaesthetic agents, including opioids, a more
comprehensive understanding of medical genetics will be
required.15
Genes and alleles
A gene has its specific locus (from Latin, place) on a given
chromosome. The gene for eye colour thus has its position in
the human DNA determined by chromosome, and position on
that chromosome. The gene, however, comes in various
forms or alleles. For eye colour, the allele for blue eyes
and the allele for brown eyes are two different alleles for
the same gene. Although the expression is sometimes
used, strictly speaking there is no such thing as a disease
gene or a disease locus, only disease alleles.
Phenotype and genotype
The classical definition of phenotype is ‘the way you look’. If
you have genes for blue eyes, that is your genotype. Your
phenotype is ‘being a blue-eyed person’. A phenotype could
also be an enzyme activity above or below a certain value, or
being able to metabolize a certain substance.
Markers
Genetic research necessitates distinction between individuals
at the DNA level. Different as we may be, we are identical for
long stretches of DNA. Researchers usually attempt to iden-
tify gene markers, a short piece of DNA that can easily be
detected. Two separate forms of markers exist, and the dif-
ferent forms can be used to tell the difference between indi-
viduals (or chromosomes, or parts of DNA). Finding a marker
is like spotting the lanterns of a ship in the night. If you see one
of the lanterns, you know you are not actually seeing the ship,
but you can have a good guess as to where the ship is. When
investigators find a marker that may be located close to a gene
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of interest, while the gene per se may not be located, sub-
stantial progress has been made. Some markers are single
base mutations, others consist of repeats of short sequences
where individuals differ in how many repeats they have,
termed microsatellite markers.
Polymorphisms
The word polymorphism comes from the Greek poly, several,
and morphe, form. Polymorphism, thus, is something that can
take one of several forms. A DNA polymorphism exists when
individuals differ in their DNA sequence at a certain point in
their genome. A normal form and a mutated form may repres-
ent such a difference. The mutated form can be a single base
mutation, or variation over a short stretch of DNA. The term
polymorphism is a general one. It is most often used to
describe a marker that occurs in several forms—a marker
polymorphism. Only 3% of DNA consists of coding
sequences and in most regions of the genome, a polymorph-
ism is of no clinical consequence. However, the term poly-
morphism is also used about a mutation inside a coding
sequence, where the mutation might be causing disease.
Single nucleotide polymorphisms (SNPs) are changes in a
single base at a specific position in the genome, in most cases
with two alleles. SNPs are found at a frequency of about
1:1000 bases in humans. By definition, the more rare allele
should be more abundant than 1% in the general population.40
The relative simplicity of SNP genotyping technologies and
the abundance of SNPs in the human genome have made them
very popular in recent years.21 Yet, there still is some debate
about the usefulness of SNP markers compared with micro-
satellite markers for linkage studies, and how many SNP
markers will have to be analysed for meaningful association
studies.41
Genotyping
Several genotyping technologies have reached maturity in the
last few years and are being integrated into large sale geno-
typing operations supported by automation. The choice of a
technology for genotyping depends on whether a few differ-
ent SNPs are to be genotyped in many individuals, or many
different SNPs are to be genotyped in a few individuals.64
Although genotyping methods are very diverse, broadly, each
method can be separated into two elements. The first element
is a method for interrogating an SNP. This is a sequence of
molecular biological, physical, and chemical procedures for
the distinction of the alleles of an SNP, that is hybridization,79
primer extension,72 oligonucleotide ligation,54 and nuclease
cleavage.55 The second element is the actual analysis or mea-
surement of the allele-specific products, that is by gel separa-
tion,63 microarrays,7 mass spectrometry,22 flow cytometry,9
etc. Often, very different methods share elements, like read-
ing out a fluorescent tag in a plate reader, or the method of
generating allele-specific products (i.e. by primer extension
or oligonucleotide ligation), which can be analysed in differ-
ent analysis formats.21
Linkage studies
A gene and a marker are said to be linked if they reside close to
each other on the same chromosome. In linkage studies, a set
of markers, with a known location on the genetic map, is used
to track down a gene of unknown location. In a linkage study,
the disease allele is not known, but merely manifests itself as
disease in the person who carries it. The basic assumption is
that if a certain disease allele and a certain marker allele are
found together in a family, the two are physically close on the
same chromosome. The statistical methods of linkage ana-
lysis calculate just how unlikely it would be to consistently
find a marker allele and a disease allele together. If this turns
out to be very unlikely to have occurred by chance, the alter-
native hypothesis of linkage of marker and disease gene is
accepted. If a marker allele and a disease allele occur together
consistently in a population, they are said to be in linkage
disequilibrium. Genetic linkage studies have identified
various loci on causative genes for malignant hyperthermia
susceptibility (MHS).49
Association studies
Association studies exploit the fact that there may be linkage
disequilibrium in the population. A study may start out with a
large number of markers with a known location. A number of
patients with a disease are examined for these markers. If a
substantial majority of patients have the same markers, it is
likely that the gene responsible for the disease is located close
to the markers that the patients have in common. The apo-
lipoprotein (apo) E4 genotype, for example, is strongly asso-
ciated with Alzheimer’s disease, representing a susceptibility
gene, but is not necessarily causative of the disease, meaning
that having this genotype is not generally sufficient to cause
Alzheimer’s.57
Pharmacogenetics—focusing on drug targets
Classically, pharmacologists have concentrated on genetic
variability that alters drug metabolizing enzymes to explain
variation in pharmacokinetic responses to drug therapy.
However, it is now apparent that genetic variability can affect
many other important proteins such as transporter proteins
and receptors. Thus, pharmacogenetics is best defined as the
study of genetic variations that cause a variable drug response
and includes the genetic polymorphism of drug transporters,
drug metabolizing enzymes, and drug receptors.
Enzymes
Genetic determinants of drug response can be divided
into two types: (i) those characterized by alteration in drug
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metabolism, such as those as a result of differences in levels of
N-acetyltransferase (NAT) or atypical plasma cholinesterase
and (ii) those characterized by alteration in pharmaco-
dynamics. Inter-individual variation in therapeutic drug
response and toxicity is most often a result of variability in
drug metabolism rather than pharmacodynamics.34
Observed genetic variability in drug metabolism can be
either monogenic or polygenic. When the variability is a
result of single genes, the term monogenic is used. When
genes, which individually produce small effects but collec-
tively lead to significant effects are involved, the term poly-
genic is used.30 Much pharmacogenetic research focuses on
the monogenic variants of drug-metabolizing enzymes and
on polymorphisms (i.e. variants that exist in at least 1% of the
population).1 Such genes generally affect drug biotransfor-
mation by altering the amount or function of an enzyme. The
existence of such polymorphisms explains why drug meta-
bolism shows a polymodal distribution. In other words,
patient populations can be divided into two groups (or pheno-
types) according to their abilities to metabolize specific probe
drugs. Poor or slow metabolizers have deficient metabo-
lizing ability; in contrast, extensive metabolizers metabolize
drugs more rapidly and may need higher doses to produce a
therapeutic response.18
Drug metabolism is divided into phase I and phase II reac-
tions. Phase I reactions, including oxidation, reduction, and
hydrolysis, introduce a polar group into the molecule, whereas
phase II reactions conjugate an endogenous hydrophilic
substance with the drug, resulting in more water-soluble
compounds.
Phase I enzymes
Oxidation, a major route of metabolism for many drugs,
is catalysed by the mixed function oxidase system, which
comprises cytochrome P450 (CYP) enzymes.
P450 enzymes are found in virtually all tissues with the
highest concentration in the endoplasmic reticulum of the
liver.66 73 The recommended nomenclature of cytochrome
P450 isoenzymes is based upon grouping enzymes and genes
into families and subfamilies with the prefix CYP denoting
cytochrome P450. Families are characterized by an Arabic
number (i.e. CYP2) and subfamilies are indicated by a letter
(i.e. CYP2D). The individual genes coding for one specific
isoenzyme are denoted by a second Arabic number after
the letter in italics, that is CYP2D6. Members of the same
enzyme=gene family may exhibit more than 40% identity in
amino acid sequences, while a subfamily consists of those
sharing greater than 55% sequence identity (Fig. 1).67
Several P450 isoenzymes are involved in human hepatic
drug metabolism. Their activities may be inhibited or induced
by drugs or environmental xenobiotics. Their activity is
also determined genetically as a consequence of common
polymorphisms.
The activity of cytochrome P450 enzymes can be measured
by administration of a probe drug, known to be selectively
metabolized by the CYP enzyme under study, followed by
measurement of the metabolic ratio (the ratio of the drug
dosage or unchanged drug to metabolite in serum or
urine). However, such phenotyping takes into account all
factors influencing the activity of the enzyme, such as the
presence of a competing substrate, and is sensitive to the
overall process of drug metabolism.
Genotyping involves identification of defined genetic
mutations on the CYP genes that give rise to the specific
drug metabolism phenotype. These mutations include genetic
alterations that lead to over-expression (gene duplication),
absenceofanactiveproteinproduct(nullallele),orproduction
of a mutant protein with diminished catalytic capacity (inac-
tivatingallele).Genotypingmethods requiresmallamountsof
blood or tissue, are not affected by underlying disease or by
drugs taken by the patient, and need to be done only once in a
lifetime. By screening for genetic variants, an individual’s
drug metabolism phenotype can be characterized.84
Besides the P450 genes, other phase I enzymes are
polymorphic, such as alcohol dehydrogenases (ADH) and
acetaldehyde dehydrogenase (ALDH), as well as dihydro-
pyrimidine dehydrogenase (DPD). With respect to the first
two enzymes, the clearance of ethanol is significantly
affected, ADHB2 giving a higher rate of ethanol metabolism
and ALDH2 polymorphism influencing acetaldehyde
metabolism. Poor metabolizers for ALDH2 develop flush
reactions and anti-abuse like side-effects when drinking
ethanol and the number of alcoholics with this genotype is
lower. A polymorphism relevant to treatment with anticancer
drugs is present in DPD. 5-Fluorouracil is metabolized by this
enzyme. Subjects with impaired enzyme activity caused by
inactivating gene mutations suffer from a severely increased
risk of adverse reactions, including myelotoxicity and
neurotoxicity following 5-fluorouracil administration.31
Phase II enzymes
Several enzyme families directly conjugate drugs or their
oxidative metabolites. There are 15 human uridine diphos-
phate glucuronosyltransferases (UGTs), broadly classified
into the UGT1 (phenol=bilirubin) and UGT2 (steroid=bile)
families.78 87 Considerable polymorphism in glutathione
S-transferase (GST) expression has been described and asso-
ciated with susceptibility to disease, particularly cancer and
asthma (both as disease-causing and disease-modifying
Fig 1 Example of cytochrome P450 (CYP) nomenclature system.
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factors).13 23 NAT was the first drug metabolizing enzyme for
which a genetic polymorphism was discovered (slow and fast
acetylators). Slow acetylators show a greater therapeutic
response than fast acetylators to several drugs (i.e. isoniazid,
hydralazine) but may be more susceptible to side-effects.
There are two human NATs, NAT1 and NAT2, with discrete
but overlapping substrate specificities. Although there
are polymorphisms in NAT1, it is the genetic variability
in NAT2 that is responsible for the slow-acetylator pheno-
type.24 Sulfotransferases (STs) catalyse the elimination of
acetaminophen and morphine in neonates.53
The clinical implications of polymorphism of drug meta-
bolizing enzymes are drug toxicity and therapeutic failure.
The clinical relevance, however, depends on the therapeutic
ratio of the drug.77
Transporter proteins
The influence of the genetic make-up of an individual is not
limited to drug metabolism. Genetic variability influences
drug absorption and this forms the basis for slow and rapid
drug absorption.
Most drugs or drug metabolites enter the cells by passive
diffusion. Some drugs are actively transported by transporter
proteins, of which membrane transporters may play a key
role. These transmembrane transporters are members of the
large protein family known as ABC (adenosine triphosphate
binding cassette) proteins.39 Although they do not catalyse
biotransformation per se, they nonetheless markedly affect
drug bioavailability and can act in conjunction with intracel-
lular drug metabolizing enzymes.
P-Glycoprotein (also called multi-drug resistant P-
glycoprotein, MDR1) is the first cloned and best-characte-
rized ABC protein.61 92 At the blood–brain barrier,
P-glycoprotein may influence the uptake of substrates into
the brain: high P-glycoprotein levels may limit the uptake of
sufficient amounts of the desired drug into the brain, and
reduced P-glycoprotein activity could lead to abnormally
increased accumulation in the brain and undesired side-
effects of a drug.6
A second subfamily of ABC proteins is the multi-drug
resistance-associated proteins, also known as the multi-
specific organic anion transporter.5 The first protein to be dis-
covered in this category was MRP1, whose over-expression is
responsible for the majority of non-P-glycoprotein-mediated
multi-drug resistance. There are seven currently known
MRPs with uncertain clinical significance. Rifampicin is
known to induce human MRP2.17
Receptors
When examining the response to a drug, the most obvious
target for genetic studies of drug response is the receptor.
Genetic variability influences interactions with receptors and
this forms the basis for poor or efficient receptor interactions.
The polymorphisms in genes encoding receptors relevant to
drug treatment of different diseases cause widespread vari-
ation in sensitivity to many drugs. For example, individuals
with a mutation in the gene encoding prothrombin may have
increased risk of cerebral vein thrombosis when using oral
contraceptives. Other examples of the impact of genetic
polymorphisms include: angiotensin converting enzyme
(ACE) and its sensitivity to ACE inhibitors; b-adrenergic
receptors and their sensitivity to b-agonists in asthmatics;
and 5 hydroxytryptamine receptors and the response to
certain neuroleptics.15
Mutations in cardiac potassium channel genes such as
HERG (human ether-a-go-go-related gene) and KvLQT1
(chromosome 11 linked LQT gene) may both give suscept-
ibility to drug-induced long QT syndrome, or KCNE2
(a potassium gene encoding MinK-related peptide-1,
MiRP1) may give susceptibility to drug-induced arrhyth-
mias. All are of clinical relevance to an anaesthetist.15
Pharmacogenomics is the research activity, which at the
genome level, aims to identify disease genes and new drug
response markers.31 The role of pharmacogenetics is increas-
ingly recognized by the pharmaceutical industry with
research programmes directed at drug discovery and devel-
opment.93 Candidate drugs whose metabolism may involve
polymorphic pathways may be screened out. Pharmacoge-
netic data may be used either to design better compounds or to
help plan clinical studies. Screening volunteers and patients
included in clinical trials may become necessary to minimize
adverse events and optimize efficacy. Clinical investigations
in various populations will help clarify inter-ethnic differ-
ences in drug disposition and response to a given drug.
Knowledge of pharmacogenetics should help reduce the
time and cost associated with new drug development.
Anaesthetic implications
Clinical experience suggests that there is great heterogeneity
in anaesthetic requirements in the way patients recover from
uncomplicated anaesthesia, as well as their requirements for
postoperative analgesia. Some of these differences can be
explained by genetically determined differences in transport
proteins, in drug targets and in enzyme functions. It is also
important to know to what extent environmental factors (such
as smoking, diet, and other drugs) interact with genetic fac-
tors to modulate drug effects.
Recovery from general anaesthesia is dependent on factors
governing drug sensitivity and drug disposition. Recovery
from a single dose of i.v. anaesthetic agent is dependent
on redistribution, whereas recovery after a prolonged infu-
sion is progressively more dependent on metabolism and
elimination of the drugs.28 Aging as well as environmental
factors may influence drug dynamics. Both alcohol and
tobacco play an important role in determining the degree
of liver enzyme induction, which determines the rate of meta-
bolism of some medications, including volatile anaesthetic
agents, thus influencing outcome from anaesthesia.71
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Enzymes
Genetic polymorphisms in metabolizing enzymes become
relevant if: they are responsible for 50% or more of the clear-
ance of a drug; when using drugs with a steep dose–response
curve and a narrow therapeutic window; and when using
drugs whose activity depends upon a metabolite formed by
a polymorphic enzyme.
Plasma cholinesterase
Inherited deficiency=reduced effect of plasma cholinesterase
will result in prolonged muscle relaxation after succinylcho-
line.68 This was the first documented example of inherited
variations in anaesthetic drug effects. The level and quality of
plasma cholinesterase activity (acylcholine-acylhydrolase
E.C.1.1.8, butyrylcholinesterase (BChE)) in a patient deter-
mines the duration of action of succinylcholine and mivacur-
ium.33 Genetic variation is one of several factors determining
the activity of cholinesterase in plasma. The expansion from
only four known forms of human serum BChE a few years ago
to over 20 variants identifiable at DNA level at present has
greatly increased the complexity of diagnosis and interpreta-
tion of these genetic traits. Although the presence of a single
genetic variant allele does not usually cause an increased
duration of action of succinylcholine or mivacurium, it
may do so if it occurs in heterozygous combination with
otherwise induced low BChE activity. Therefore, it is impor-
tant to be able to diagnose not only the well-known atypical
variant but also the low-activity variants such as the H, J, K,
and S variants. Using standard enzymatic and inhibition ana-
lysis, it is not possible to distinguish between the usual geno-
type (UU) and genotypes in which one of the quantitative
variants, H, J, K, or S, is present in heterozygous combination
with the usual gene (UH, UJ, UK, or US).33 Recent advances
in molecular biology techniques have allowed analysis of the
detailed structure of the human BCHE gene. For qualitative
variants, a portion of the structural gene responsible for the
amino acid sequence of the protein (BChE) is altered. This
structural gene mutation accounts for the abnormal kinetic
properties of the variant BChE protein. Variants in which
there is a marked quantitative reduction in the level of enzy-
matic activity could result from: (i) a structural modification
that causes little or no active enzyme being preserved (such
as a mutation to a ‘stop’ codon, or the production of a very
unstable enzyme), or (ii) a regulatory defect affecting pri-
marily the rate of enzyme synthesis. The latter type mutations
are much more difficult to diagnose, as they can occur over
a much larger region of the BCHE gene. Structural gene
differences should be within the 1722 nucleotide bases
located in exons 2, 3, or 4, as these contain all the codons
representing the 574 amino acids making up the monomeric
BChE enzyme protein sequence.42
In addition, plasma cholinesterase availability could be
decreased, and thus neuromuscular block after succinyl-
choline lengthened, by competitive interaction with (i) anti-
cholinesterases, including neostigmine, edrophonium, and
ecothiopate (an organophosphorus compound once used
topically as a miotic in ophthalmology) and=or (ii) other
drugs metabolized by plasma cholinesterase, such as etomi-
date, propanidid, ester local anaesthetics, methotrexate,
monoamine oxidase inhibitors, and esmolol.68
CYP enzymes
CYP families 1–3 are responsible for phase I metabolism of
most drugs. Enzymes in the CYP2C, CYP2D, and CYP3A
subfamilies are most active in metabolizing clinically used
drugs.18
CYP2C enzymes eliminate oral hypoglycaemics, war-
farin, some antiepileptics, non-steroidal anti-inflammatory
drugs,amitriptyline,barbiturates,diazepam,andomeprazole.
The most important substrates for CYP2D6 are a number of
psychoactive drugs such as antidepressants and neuroleptics,
and cardiovascular drugs such as beta-blockers and antiar-
rhythmics. Drugs in this class relating to anaesthetic practice
include codeine, tramadol, ondansetron, granisteron, and
metaraminol.10 It has been postulated that CYP2D6 poor
metabolizers are more susceptible to pain than extensive
metabolizers because of a defect in synthesizing endogenous
opioids.15 Codeine is ineffective as an analgesic in 6–7%
of a Caucasian population as a result of homozygosity for
non-functional CYP2D6 mutant alleles. CYP2D6 deficient
patients will not convert codeine to morphine. Postoperative
pain treatment with codeine-containing drugs will therefore
have limited effect in patients with this trait, whose request
for larger doses of codeine could easily be misinterpreted as
drug addiction. This genetic variation makes it not surprising
that a standardized prescription of codeine for pain relief will
result in remarkable variation in the adequacy of pain relief.
CYP2E1 is more of toxicological interest as it has been
reported to have a unique capacity to activate many xeno-
biotics to hepatotoxic (among them acetaminophen) or
carcinogenic products.47 CYP2E1 is the principal, if not
sole human liver microsomal enzyme catalysing defluorina-
tion of sevoflurane. It is also the principal, but not exclusive
enzyme responsible for the metabolism of methoxyflurane,
and is responsible for a significant fraction of isoflurane and
enflurane metabolism (Table 1). Identification of CYP2E1 as
the major anaesthetic metabolizing enzyme in humans pro-
vides a mechanistic understanding of fluorinated ether anaes-
thetic metabolism and toxicity.37 75
CYP3A4 handles drugs such as local anaesthetics, a
number of antiepileptics, steroid hormones, systemic anti-
fungals, midazolam, erythromycin, alfentanil, and possibly
also fentanyl and sufentanil (Table 1).19 As human alfentanil
metabolism is catalysed predominantly, if not exclusively by
CYP3A3=4 (electrophoretically inseparable and immuno-
chemically indistinguishable), inter-individual variability
in human alfentanil disposition and alfentanil drug inter-
actions may be attributable to individual differences in
CYP3A3=4 activity. Variability in CYP3A3=4 expression
may have genetic and environmental (age, sex, disease
state, concomitant drug administration) components, and
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the degree of variability is sufficient to explain the 10-fold
range in alfentanil clearance observed clinically.36
Enzymes of phase II of drug metabolism show extensive
polymorphism (Table 2). Despite this, investigations of geno-
type–phenotype correlations have been confounded by lim-
ited substrate specificity and a less pronounced hereditary
contribution to differences in bioactivity.31 87 Genetic poly-
morphism in genes encoding enzymes such as UGTs, STs,
NAT 1 and 2, and GSTs may cause significant variation in
rendering drugs water soluble and then suitable for renal
excretion.85
Several mutations in UGT1 genes have been reported.
Inheritance of two defective alleles is associated with reduced
bilirubin-conjugating activity, giving rise to clinical condi-
tions such as Crigler-Najjar and Gilbert syndromes.78
Lorazepam is metabolized to a 3-O-phenolic glucuronide
in man and excreted in urine, a reaction possibly catalysed
by UGT2B7. Lorazepam clearances were 20–40% lower in
Gilbert patients when compared with controls.78 Oxazepam
administered as a racemic mixture was shown to be prefer-
entially excreted as the (S) glucuronide, and a low S=R
glucuronide ratio was used to assess poor glucuronidation
of oxazepam. Ten per cent of the whole population was
determined to be poor glucuronidators of (S) oxazepam,
which suggested a genetic relationship to the UGT2B7
isoform.56 Inter-ethnic differences in codeine glucuroni-
dation, reduced in Han Chinese men when compared with
a Swedish population, are known to exist.91
Angiotensin converting enzyme
Most recently, Lasocki and colleagues provided the first evi-
dence for an in vivo association between the pressure–flow
relationship and the insertion=deletion polymorphism of the
ACE gene. Multivariate analysis showed that homozygosity
for the D allele was the only predictive variable of the slope
of the curve. These findings indicate a modified vascular
response toflowinDDpatients.The investigatorsalsoshowed
an increased vascular reactivity to phenylephrine associated
with the D allele of the ACE gene.43
Transporter proteins
P-Glycoprotein, a member of the adenosine triphosphate-
binding cassette superfamily of cellular efflux drug
transporters, is expressed in the capillary endothelium of
the blood–brain barrier and in many other cell membranes
such as intestinal enterocytes and biliary and renal epithelial
cells.82 Block of P-glycoprotein allows enhanced central ner-
vous system (CNS) entry of some drugs, offering new pos-
sibilities to explain CNS-related adverse effects during the
administration of drugs that are substrates of P-glycoprotein
and, furthermore, to manipulate the CNS entry of drugs
whose target is located in the brain.89
The P-glycoprotein substrate and inhibitor cyclosporin
was shown to increase fentanyl-induced analgesia in
mice.11 More recently, morphine has been shown to increase
analgesia in P-glycoprotein knockout mice compared with
wild-type mice.74 Thus, P-glycoprotein may limit morphine
entry into the brain. Loperamide, a widely used anti-
diarrhoeal agent, although a potent opioid in vitro, produces
only gastrointestinal opioid effects and lacks CNS effects.
This apparent tissue selectivity is probably a result of
loperamide being a P-glycoprotein substrate, so that P-
glycoprotein in the CNS effectively prevents access of loper-
amide to the CNS. Supportive of this hypothesis is the finding
that in mice with MDR1 gene disruption, brain loperamide
Table 1 Clinically relevant genetic polymorphisms affecting phase I metabolism and effect of a drug15 84
Gene=enzyme Drug Drug effect linked to polymorphism
CYP1A2 Caffeine, haloperidol, acetaminophen, theophylline
CYP2C8-9 Ibuprofen, phenytoin, warfarin, tolbutamide, diazepam Anticoagulant effect of warfarin
CYP2C19 Amitriptyline, barbiturates, diazepam, omeprazole
CYP2D6 Antiarrhythmics, antihypertensives, beta-blockers,
tricyclic antidepressants, neuroleptics, selective
serotonin reuptake inhibitors, morphine derivatives
Tardive dyskinesia from chlorpromazine,
reduced analgesic effect of codeine, altered
beta-blocker effect
CYP2E1 Acetone, ethanol, acetaminophen, volatile anaesthetics Hepatotoxicity
CYP3A4 Carbamazepine, quinidine, alfentanil, fentanyl? Sufentanil?
Local anaesthetics, steroids, midazolam, erythromycin,
systemic antifungals
Table 2 Clinically relevant genetic polymorphisms affecting phase II metabolism and effect of a drug15 44
Gene=enzyme Drug Drug effect linked to polymorphism
DPD Fluorouracil 5-Fluorouracil neurotoxicity
NAT (NAT 2) Isoniazide, hydralazine, sulphonamides,
procainamide
Hypersensitivity to sulfonamides,
hydralazine-induced lupus
Uridine diphosphate glycosyl transferase
(UGT1As, UGT2Bs)
Acetaminophen, propofol, opioids, naproxen,
ibuprofen
Not yet elucidated
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concentrations were 8-fold higher than those observed in
normal mice, and lethal opioid effects were produced.62
In contrast to loperamide, opioids in widespread clinical
use as i.v. anaesthetic agents or adjuvants, such as fentanyl,
sufentanil, and alfentanil, are not in vitro substrates of P-
glycoprotein. Morphine is a P-glycoprotein substrate with
clearly less clinical relevance than loperamide. Inhibitory
effects of the opioids fentanyl, sufentanil, and alfentanil on
P-glycoprotein activity in vitro are reached only with
relatively high concentrations.82 Thus, the wide spectrum
of P-glycoprotein activity may partly explain the varying
CNS-related effects of opioids.
As new drugs are introduced into clinical practice, it will be
important to assess whether they are P-glycoprotein sub-
strates or inhibitors to assess their potential for drug interac-
tion. Inter-individual variability in P-glycoprotein activity
is now recognized, which may at least partially depend on
genetic polymorphism. Homozygosity for an allele asso-
ciated with deficient P-glycoprotein activity occurs in 24%
of white people.26
Receptors
Polymorphisms in genes encoding receptors (drug targets)
may explain some of the variation in sensitivity to drugs.
Ryanodine receptor (RYR1)
MH is a classic example of a dramatic interaction
between a drug and a mutated receptor. In patients with a
mutation of the skeletal muscle RYR1 gene, exposure to
halothane and=or succinylcholine produces uncontrolled
release of calcium from skeletal muscle cells, leading to
hyperthermia, myolysis, and ultimately multi-organ failure.
To date, almost 50 different mutations in the RYR1 gene on
chromosome 19 are known to cause susceptibility to malig-
nant hyperthermia (MHS phenotype).49 Genetic linkage stu-
dies indicate that the RYR1 locus (MHS1) on chromosome
19q13.1 accounts for at least 50% of MH families. A second
locus, MHS2, was assigned tentatively to chromosome 17q in
North American families,45 but could not be replicated in
European families despite extensive efforts. However, it is
quite possible that the differences in the protocols result in
detection of different phenotypes and are weighted differ-
ently with respect to identification of modulating gene
effects.16 Markers linked to the CACNL2A gene on chromo-
some 7q have been tentatively linked to MHS in a single
European family (MHS3).29 A systematic linkage study
using a set of polymorphic microsatellite markers covering
the entire human genome in a small number of large, appar-
ently non-chromosome 19 linked European MH families,
identified a locus on chromosome 3q13.1 (MHS4),70 a
locus on chromosome 1q (MHS5),50 59 and a tentative
locus on chromosome 5q (MHS6).59 A causative gene at
the MHS3 and MHS4 locus has yet to be identified.
The CACNL1A3 gene encodes the a1-subunit of the DHP
receptor maps to the MHS5 locus and functions as a voltage
gated channel. Evidence for the MHS6 locus is weak and its
validity remains to be confirmed.49
m-Opioid receptor (MOR)
Variation in the expression of this receptor determines the
analgesic potency of morphine. It also explains the difference
in the response to painful stimuli and response to opioid
drugs, probably a result of a genetic polymorphism in the
transcription-regulating region of this gene.77 This makes the
MOR gene a candidate for susceptibility or resistance to pain.
A SNP in the human MOR gene at position 118 (A118G
transition) results in a receptor variant that bindsb-endorphin
nearly three times more tightly than the most common allelic
form of the receptor.4 This makes b-endorphin nearly three
times more potent than in individuals without the mutation. It
is unclear whether this variant has direct or indirect implica-
tions for opioid addiction.15
More recently, three SNPs in the hMOR gene that cause
amino acid substitutions in the third intracellular (i3) loop of
MOR have been identified (R260H, R265H, and S268P).
Each of the three SNPs caused substantial changes in basal
G protein coupling, calmodulin binding, or both. Carriers of
the mutant alleles might display altered responses to narcotic
analgesics.83
GABAA receptor
A new class of human GABAA receptor subunit (e), that
confers insensitivity to the potentiating effects of i.v. anaes-
thetic agents on gabaminergic transmission, has been identi-
fied. Wilke and colleagues identified the gene, symbolized
GABRE, coding for class epsilon of the GABAA receptor
(gene map locus Xq28).88 Genetic variation in the gene
encoding for this subunit of a GABA-receptor may be of
importance for the sensitivity to diazepam, barbiturates
and propofol, or susceptibility to alcohol addiction.8 32 Vola-
tile anaesthetics act through a different site on the GABAA
receptor molecule from the i.v. anaesthetics, although the
nature and location of that site remains unclear (Fig. 2).
Volatile anaesthetics and propofol show no significant selec-
tivity between any receptor subtype. In contrast, etomidate
acts preferentially through receptors containingb2 orb3 sub-
units. This selectivity is determined by a single amino acid (an
asparagine at amino acid number 265 in b2 and b3 subunits;
a serine at the equivalent position in b1.2 Extrapolating
the results of animal studies to humans, it could be predicted
that an anaesthetic that is selective for b3 containing
GABAA receptors would enable faster recovery, perhaps
without the ‘hangover’ effect.86 Gene targeting in mice
may be valuable for elucidating the mechanism of action
for some drugs. A variety of manipulations are possible,
including introducing a gene not present normally (transgenic
mice), removing an endogenous gene (‘knockout mice’), or
replacing an endogenous gene with an altered copy (‘knockin
mice’).27 Knockout of the GABAA g2 receptor subunit gene
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resulted in mice that were insensitive to the sedative=hypnotic actions of benzodiazepines.20
The effects and side-effects of any drug will significantly
depend on the genetic impact on its pharmacokinetics and
pharmacodynamics. An active drug which is metabolized
slowly by a person with increased receptor sensitivity may
cause toxic effects, while an active drug which is metabolized
extensively by a person with reduced receptor sensitivity,
may have a reduced effect.15
An understanding of the CYP system and its substrates is
also a key factor in the prevention of important drug–drug
interactions, either as a result of enzyme induction or inhibi-
tion. The former may take some time to develop and usually
reduces the effect of the drug involved, while the latter takes
place instantly with side-effects as a common result.12 The
numberofpossibilitiesareoverwhelming,butmaybereduced
somewhat by a few rules of thumb. It is usually required that
these interactions occur when the involved drugs are sub-
strates for the same CYPs. Susceptibility to, for instance,
inhibition interactions usually requires that one metabolic
product accounts for 30–40% of the effect of a drug, and
that its metabolic pathway is catalysed by a single enzyme.46
Future developments
What is the role of genotyping in current anaesthesia prac-
tice? Should genotyping be performed routinely in each
instance when the drug of choice is substrate for a poly-
morphic enzyme, especially when a close relationship
between serum drug concentration and effect is demon-
strated?48 Alternatively, should genotyping be indicated
when individuals demonstrate a suboptimal response to
drugs that are substrates for polymorphic enzymes?
Routine screening of patients before starting pharma-
cotherapy would have significant cost implications. Cost
savings associated with toxic episodes or therapeutic failure
and subsequent intervention could be expected in most
specialties. But in anaesthesia, we administer drugs to a
large number of patients, often once only, and frequently
only briefly after the patient has presented for treatment. In
this setting, a genetic screening programme is unlikely to
represent a cost-effective method for reducing morbidity.
However, once conditions such as MH are documented,
family screening becomes a logical follow-up. The quest for a
simple non-invasive diagnostic test for MH susceptibility has
moved forward dramatically since the first descriptions of
linkage of the RYR1 gene to MHS. However, resolution of
issues confounding the genetics of MH and its associated
disorders will be necessary before genetic diagnosis can
widely replace the in vitro contraction test.49
Similarly, screening for abnormal BChE genotypes is
neither practical nor cost effective in daily clinical practice,
but it could be used to supplement equivocal results obtained
by biochemical methods or in situations where establishing
the genotype may be clinically important.81
Furthermore, recent findings in molecular research suggest
that the outcome of cardiovascular surgery is at least partly
determined by the individual patient’s genetic predisposition
to react to surgical trauma and extracorporeal circulation.
Genomic variations may prove to serve as future diagnostic
tools for the risk stratification of patients undergoing cardio-
vascular surgery. The evaluation of possible genomic
markers for risk stratification of patients at high risk of
developing adverse outcomes has begun.69
Pharmacogenetics will have its application in clinical
research.76 When designing clinical trials, genotype can be
used a priori, as an exclusion criterion. With this methodo-
logy, the study group can be smaller and more homogeneous,
though less representative. Phase I trials can thus be designed
for representative populations of the principal metabolic
patterns.51 Alternatively, the genotype can be used a
Fig 2 Cartoon representation of the g-aminobutyric acid (GABA)-A receptor sitting in a cell membrane, indicating some of the drug binding sites. The spots
represent chloride ions flowing through the channel. Reprinted from Drug Discovery Today, Vol. 8, Whiting PJ. GABA-A receptor subtypes in the brain: a
paradigm for CNS drug discovery? p. 448, Copyright 2003, with permission from Elsevier.
Iohom et al.
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posteriori, as a stratification factor. It should also be recalled
that ethnic origin has an effect on allelic polymorphism, and
that trials conducted on Caucasians may not necessarily be
extrapolated to other ethnic groups.58
Conclusions
Pharmacogenetics is only at the very beginning of its use in
clinical practice. It is very likely that its contribution to new
drug development will become reality. Common polymorph-
isms in drug targets dictate that DNA sequence variations will
be taken into account in the genomic screening processes
aimed at new drug development. This will provide new
insights for the development of medications that target criti-
cal pathways in disease pathogenesis, and medications that
can be used to prevent diseases in individuals who are gene-
tically predisposed to them. This represents a migration from
the traditional strategy of trying to develop medications that
are safe and effective for every member of the population, but
one that is a pharmacological long shot because of highly
potent medications, genetically diverse patients, and diseases
that have heterogeneous subtypes. It is anticipated that, over
the next decade, the Human Genome Project, coupled with
DNA array technology, high-throughput screening systems
and advanced bioinformatics, will permit rapid elucidation of
complex genetic components of human health and disease.
Despite its promise, genomics has yet to make a major impact
on drug development processes. With tens of thousands of
genes now at our disposal, trying to identify the best drug
targets is difficult. By 2005, it has been predicted that the
average pharmaceutical company will be assessing 200 tar-
gets per year and 70% of these will be novel.57
Although pharmacogenetics is unlikely to change the way
anaesthesia is practised today it may help to elucidate inter-
patient variability in drug response. We will, undoubtedly,
see its impact on other specialties, on new drug development,
and in drug delivery systems.
AcknowledgementSupported by the Higher Education Authority in Ireland, Programme forResearch in Third Level Institutions.
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