Presentation at the VIVO 2011 conference

Presentations by Johannes Keizer is licensed under a Creative Commons Attribution-

NonCommercial-ShareAlike 3.0 Unported License.

Dr. Johannes KeizerOffice of Knowledge Exchange, Research and ExtensionFood and Agriculture Organization of the UN

CIARD - creating a global framework for information sharing in agricultural research and innovation – Role of VIVO

Talk at the VIVO 2011 conference

http://creativecommons.org/licenses/by-nc-sa/3.0/

http://creativecommons.org/choose/aims.fao.org









“... FAO’s principle task is to work to ensure that the world’s knowledge of food and agriculture is available to those who need it when they need it and in a form which they can access and use ...”

johannes keizerhttp://aims.fao.org

There will be generated more scientific data in the next 5 years than in the history of humankind


Contribution and Participation in Science

Territory size shows proportion of scientific papers published in 2001 by authors living there. Copyright SASI Group (University of Sheffield) and Mark Newman (University of Michigan)



Global Trends in Publishing



The Internet!


Aggregation States of Knowledge


Data and Information in Agricultural Research and Extension


Distributed Repositories

• stats• gene banks• gis data• blogs, • journals• open archives• raw data• technologies• learning objects• ………..


Task 1: making services

? ? ?


Task 2: getting knowledge

? ? ?


? ? ?

How can I get in real time all the specimen data on useful insects from all people making research on this on my desktop? How can I share in real time my data with other colleagues working on that.

Task 3: working together


http://www.ciard.net



The Project: agINFRA

Enforce Webpublishing of Data Produce linked open data from

all datasets Use common reference

vocabularies to interlink data sets

Don’t wait ! Wrap the Legacy


RING

routemap to information nodes and gateways

ToolsLOD

enabled software

VocBenchvocabulary server

concepts and entities triples

LOD Generator

triplifier, concept and entity

identifier

Data Services

Webservices + APIs to triple stores

Cloud

storage for RDF triples

The Infrastructure elements


Lod Generator: process


Data Services: process


RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


Under Construction!!!!!!!

VocBench

AGROVOC Linked Open Data

AgroTagger

Triplifying AGRIS

Linking Data!

Drupal front ends for triple stores

The CIARD R.I.N.G

“AgriVIVO


So…

Where does VIVO fit in?


Background

Many Agriculture Information communities, how can we bring together an international network of researchers in this domain

A precedent for a community open source based solution


Many Agriculture Communities

• E-Agriculture site has 7111 members from 150 countries

• CIARD site: 6038 seeded from E-Agriculture site

• AIMS site has 280 users

• SIDALC has 150+ institutions in 22 LAC countries

• IAALD has 400+ members in 80 countries

• None of these user communities “talk” to each other (though there is a lot of overlap


Precedent for Open Source Applications

AgriDrupal – A content management system based on Drupal with Agriculture Information Systems customizations

AgriOceanDSpace – An institutional repository platform, customized for the Agriculture domain


How about “AgriVivo”?

An open source semantic web application, customized for managing people (and their activities) that work in the Agriculture domain.

Enabling an International Network of Agriculture researchers…


AgriVivoAgri VIVO

Triple Store

AIMS

E-AGRICULTURE

AGRIS

SIDALC

IAALD


AgriVivo: Areas of Work

Multi Language Support

Integration of Agricultural Ontolologies

Development of Harvesters for ingest of Agricultural documents (AGRIS)

Community Search of AgriVivo Sites


RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


Linking Data


Serendipity linking


http://aims.fao.org/aos/agrovoc/c_7825

Semantic Linking




http://eurovoc.europa.eu/218754

Semantic Linking











http://agclass.nal.usda.gov/nalt/2011.xml#1780







AGROVOC

http://aims.fao.org/aos/agrovoc/c_12332 owl:sameAs http://eurovoc.europa.eu/219871 skos: exact match UNBIS: Toxic Substances

http://agris.fao.org/agris-search/search/display.do?f=1996/TR/TR96001.xml;TR9600026

Linking data through common URIs

http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:202:0011:0015:EN:PDF

http://unbisnet.un.org:8080/ipac20/ipac.jsp?session=128F308557F34.283092&profile=bib&uri=full=3100001~!685149~!1&ri=1&aspect=subtab124&menu=search&source=~!horizon


Eurovoc TOXIC SUBSTANCES

UNBIS

http://agclass.nal.usda.gov/nalt/2011.xml#1780

NALT

http://www.agnic.org/search/CAT85822953








http://lprapp14:8090/openagris/search.do?recordID=JP2010001379


Open AGRIS threads


The AIMS Community

Thank You!Credits: John Ferreira, Imma Subirats, Yves

Jaques, Valeria Pesce, Fabrizio Celli, Ahsan Morshed, Catarina Caracciolo, Dickson Lukose, Gudrun Johannsen, Stefano Anibaldi, Armando Stellato, Tom Baker and many others

Annexes


RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


The VocBench


The VocBench


VocBench Features

Domain independent

Structure independent (i.e. thesauri, Glossaries, etc)

Supports RDF (SKOS, SKOS-XL), OWL

Supports collaborative editing

Supports editorial workflow, with user roles

Simple and advanced search

Supports data export: SKOS, Relational format (MySQL)



Further schemes in FAO

skos:broader

:bar

has_synonymhas_translation

skos:literalForm “maize”:foomaïs (fr)

:foo

has_synonymskos:literalForm “corn”

:bar

8171

1474

skosxl:altLabel

skosxl:prefLabel

skos:broader

has_synonym

SKOS Label

The AGROVOC concept scheme

SKOSConcept

rdf:type

rdf:type

6211

skos:broader

AGROVOCConceptScheme

skos:topConceptOf

skos:inScheme

Another scheme in FAO

Other scheme in FAO

skos:inScheme

12332




RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


LOD Generator/Agrotagger


• Does Concept identification in unstructured texts

• Uses Agrovoc as a controlled vocabulary

• Prototype under testing with excellent results (entire repository of ICARDA indexed)

• Will produce in future Structured RDF files that can be used to link data like “open Calais”

AgroTagger




AGRIS Journal disambiguation

2.644.818 AGRIS records

2.171.113 records are journal records (82.09%)

1.788.083 journal records have been covered by the disambiguation process (82.35%)

14.658 journals have been correctly disambiguated

~20.000 strings must be examined yet: they refer to journal’s titles

Triples have been generated:


Triplifying AGRIS (small example)

<?xml version="1.0" encoding="utf-8"?><rdf:RDF xmlns:ags="http://purl.org/agmes/1.1/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:bibo="http://purl.org/ontology/bibo/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/"><bibo:Journal rdf:about="http://aims.fao.org/aos/journal/c_b6e4ca85">

<bibo:ISSN>0101-9066</bibo:ISSN><bibo:ISSN>0101-9066</bibo:ISSN><dct:title><![CDATA[Circular técnica]]></dct:title><dct:alternative><![CDATA[Circular técnica (Centro Nacional de Pesquisa de Seringueira e Dendê)]]></dct:alternative><dct:alternative><![CDATA[Circular Tecnica - Centro Nacional de Pesquisa da Seringueira e Dende]]></dct:alternative><dct:alternative><![CDATA[Circular técnica - CNPSD]]></dct:alternative><dct:alternative><![CDATA[Circ. téc.]]></dct:alternative><ags:publisherPlace rdf:resource="http://aims.fao.org/aos/geopolitical.owl#Brazil"/><dct:publisher><![CDATA[Empresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Seringueira e

Dendê]]></dct:publisher><dct:language>por</dct:language><dct:date>1980</dct:date><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_10795"/><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_4650"/><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_32372"/><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_332"/><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_3589"/><dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_5556"/>

</bibo:Journal>


RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


The CIARD RING


The CIARD RING

Roadmap to information nodes and gateways

Community switchboard to find data sources

Not only registry, but dynamic instrument for data linking


RING - Charts and numbers

http://ring.ciard.net


RING – Numbers

Number of documents potentially reachable through the services registered in the RING.

Types of service considered: document repositories and bibliographic databases.

http://ring.ciard.net/totals

http://ring.ciard.net/totals


RING


ToolsLOD

enabled software



LOD Generator


identifier

Data Services


Cloud


The Infrastructure elements


http://aims.fao.org


StandardsTools

ServicesAdvice

http://www.ciard.nethttp://ring.ciard.nethttp://aims.fao.orghttp://agris.fao.org

Agricultural Information Management Standards

http://www.ciard.net/

http://ring.ciard.net/

http://aims.fao.org/

http://agris.fao.org/

Presentation at the VIVO 2011 conference

Technology

orgjohannes keizer

orgjohanne keizer

publishing http

specimen data

morescientific data

open data lod agrovocconcepts

agriculture organization

agriculture domainhttp