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Ver las estadsticas bsicas calculadas sobre un
conjunto de datos
Visualizar el esquema de la tabla y la lista de todas las
otras tablas de la base de datos
Organizar los datos de salida en varios formatosdiferentes para su uso en otras aplicaciones, hojas de
clculo o bases de datos
Establecer restricciones sobre los valores de campoincluidos en la salida
Datos compartidos con protein DBs, visiGen, hgFixed
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Tabla primaria:
posiciones nombres, etc.
(MySQL)
visualization Busqueda y descarga
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Credits
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License
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Karolchik, et al.
The UCSC Table Browser data
retrieval tool. Nucl. Acids Res.32(Suppl 1), D493-D496 (2004)
http://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=ref7/27/2019 Presentacion de Bioinformatica
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 11
Choose Genome
In the Human genome,
search for simple repeats
in the entire genome
with the exact sequence CAG
and get table data.
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 12
Choose Data Table Custom Tracks
In the Human genome,
search for simple repeats
in the entire genome
with the exact sequence CAG
and get table data.
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 13
Describe table
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In the Human genome,
search for simple repeats
in the entire genome
with the exact sequence CAG
and get table data.Copyright OpenHelix. No use or
reproduction without expresswritten consent 14
Choose Region to Search Define region
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reproduction without expresswritten consent 15
Paste Upload
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reproduction without expresswritten consent 16
Data Summary
Nearly 1 million simple
Repeats annotated in the
Human genome
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In the Human genome,
search for simple repeats
in the entire genome
with the exact sequence CAG
and get table data.Copyright OpenHelix. No use or
reproduction without expresswritten consent 17
Create Filter
Submit Filter
Delete wildcard *
and type inCAG (uppercase)
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 18
Output dataIn the Human genome,
search for simple repeats
in the entire genome
with the exact sequence CAG
and get table data.
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 19
Output formats
Text Fields
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 20
Sequence
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Database
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 22
Custom Track
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Hyperlinks
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Adding name creates file on desktop,
leaving blank creates output in browser.
(exception: custom track)
Data Summary
80 simple repeats in
the genomematch our filter
criteria, out of 1 million
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Copyright OpenHelix. No use or
reproduction without expresswritten consent 25
Fields