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Jo.rn.tL!..of Gene..tC~!..Viro!og_y..!.!.999.!.,..77.,..287.3C287.9: ..... Pr!nted irl.G~'e.at.Br!tain .......................................................................................................................... Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female A. Gruber, P. Stettler, P. Heiniger, D. Sch0mperli and B. Lanzrein Division of DevelopmentalBiology,Zoological Institute,University of Berne, Baltzerstrasse 4, CH-3012 Bern, Switzerland Many endoparasitic wasps inject, along with the egg, polydnavirus into their insect hosts, the virus being a prerequisite for successful parasitoid de- velopment. The genome of polydnaviruses consists of multiple circular dsDNA molecules of variable size. We show for a 12 kbp segment of the braconid Chelonus inonitus (CiV12) that it is integrated into the wasp genome. This is the first direct dem- onstration of integration for a bracovirus. PCR data indicated that the integrated form of CiVIZ was present in all male and female stages investigated while the excised circular virus DNA only appeared in females after a specific stage in pupal-adult development. The data also indicated that after excision of virus DNA the genomic DNAwas rejoined. This has not yet been reported for any polydnavirus. Sequence analyses in the junction regions revealed the presence of an imperfect consensus sequence of 1 5 nucleotides in CiV12, in each terminus of the integrated virus DNA and in the rejoined genomic DNA. Within these repeats two sequence types (ATA, TAC) were observed in the various virus clones and in the clones encompassing the rejoined genomic DNA; they corresponded to the sequence type in the right and left junction, respectively. To explain this, we propose a model of virus DNA replication in which the genomic DNA is folded to juxtapose the direct repeat of the left with that of the right junction; recombination at specific sites would then yield the two types of virus and rejoined genomic DNA. Introduction Polydnaviruses are characterized by having polydisperse dsDNA genomes and occur in parasitic wasps of the families Ichneumonidae and Braconidae (reviewed in Fleming, I992; Fleming & Krell, 1993; Stoltz, 1993). Accordingly, they are classified as the genera Ichnovirus and Bracovirus (Francki et aI., 1991). Ichnovirus particles consist of lenticular nucleocapsids of usually uniform size and are surrounded by two unit membrane envelopes. Bracovirus particles, on the other hand, consist of nucleocapsids of uniform diameter but of variable length and may contain one or more nucleocapsid within a single unit membrane envelope (reviewed in Stoltz & Vinson, 1979; Fleming & Krell, 1993). Ichnoviruses and bracoviruses Author for correspondence: B. Lanzrein. Fax +41 31 631 46 16. e-mail [email protected] The sequence data reported in this paper have been deposited in the EIBL database and assigned the accession numbers Z58828 and Z58830-Z58832, replicate only in the nuclei of calyx ceils of wasp ovaries from where they are secreted into the oviduct and injected into the host egg or larva (reviewed in Stoltz, 1993). Polydnaviruses are of crucial importance for survival of the parasitoid larva as they play a role in abrogation of the immune response against the parasitoid (reviewed in Lavine & Beckage, I995) and in host regulation (reviewed in Lawrence & Lanzrein, 1993; Stoltz, 1993). Genetic studies indicated that both ichnoviruses and bracoviruses are transmitted vertically through germ line tissue (Stoltz et aI., 1986; Stoltz, 1990). The mechanism utilized for ichnoviruses appears to be integration of virus DNA into the wasp's genome. Several segments of the ichnovirus of Campoletis sonorensis were detectable as off-size restriction fragments in male and female somatic tissue (Fleming & Summers, I986; Fleming & Krell, 1993) and for one virus segment integration into the wasp genome has been un- equivocally demonstrated (Fleming & Summers, 199I). In the case of the ichnovirus of Hyposoter fugitivus physical mapping and Southern blot data also indicated integration of virus DNA :87! 0001-4055 © 1996 SGM
7

Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

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Page 1: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

J o . r n . t L ! . . o f Gene..tC~!..Viro!og_y..!.!.999.!.,..77.,..287.3C287.9:.....Pr!nted i rl.G~'e.at.Br!tain ..........................................................................................................................

Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

A. Gruber, P. Stettler, P. Heiniger, D. Sch0mperli and B. Lanzrein

Division of Developmental Biology, Zoological Institute, University of Berne, Baltzerstrasse 4, CH-3012 Bern, Switzerland

Many endoparasitic wasps inject, along with the egg, polydnavirus into their insect hosts, the virus being a prerequisite for successful parasitoid de- velopment. The genome of polydnaviruses consists of multiple circular dsDNA molecules of variable size. We show for a 12 kbp segment of the braconid Chelonus inonitus (CiV12) that it is integrated into the wasp genome. This is the first direct dem- onstration of integration for a bracovirus. PCR data indicated that the integrated form of CiVIZ was present in all male and female stages investigated while the excised circular virus DNA only appeared in females after a specific stage in pupal-adult development. The data also indicated that after excision of virus DNA the genomic DNAwas rejoined. This has not yet been reported for any polydnavirus.

Sequence analyses in the junction regions revealed the presence of an imperfect consensus sequence of 1 5 nucleotides in CiV12, in each terminus of the integrated virus DNA and in the rejoined genomic DNA. Within these repeats two sequence types (ATA, TAC) were observed in the various virus clones and in the clones encompassing the rejoined genomic DNA; they corresponded to the sequence type in the right and left junction, respectively. To explain this, we propose a model of virus DNA replication in which the genomic DNA is folded to juxtapose the direct repeat of the left with that of the right junction; recombination at specific sites would then yield the two types of virus and rejoined genomic DNA.

I n t r o d u c t i o n

Polydnaviruses are characterized by having polydisperse dsDNA genomes and occur in parasitic wasps of the families Ichneumonidae and Braconidae (reviewed in Fleming, I992; Fleming & Krell, 1993; Stoltz, 1993). Accordingly, they are classified as the genera Ichnovirus and Bracovirus (Francki et aI., 1991). Ichnovirus particles consist of lenticular nucleocapsids of usually uniform size and are surrounded by two unit membrane envelopes. Bracovirus particles, on the other hand, consist of nucleocapsids of uniform diameter but of variable length and may contain one or more nucleocapsid within a single unit membrane envelope (reviewed in Stoltz & Vinson, 1979; Fleming & Krell, 1993). Ichnoviruses and bracoviruses

Author for correspondence: B. Lanzrein.

Fax +41 31 631 46 16. e-mail [email protected]

The sequence data reported in this paper have been deposited in the

EIBL database and assigned the accession numbers Z58828 and

Z58830-Z58832,

replicate only in the nuclei of calyx ceils of wasp ovaries from where they are secreted into the oviduct and injected into the host egg or larva (reviewed in Stoltz, 1993). Polydnaviruses are of crucial importance for survival of the parasitoid larva as they play a role in abrogation of the immune response against the parasitoid (reviewed in Lavine & Beckage, I995) and in host regulation (reviewed in Lawrence & Lanzrein, 1993; Stoltz, 1993).

Genetic studies indicated that both ichnoviruses and bracoviruses are transmitted vertically through germ line tissue (Stoltz et aI., 1986; Stoltz, 1990). The mechanism utilized for ichnoviruses appears to be integration of virus DNA into the wasp's genome. Several segments of the ichnovirus of Campoletis sonorensis were detectable as off-size restriction fragments in male and female somatic tissue (Fleming & Summers, I986; Fleming & Krell, 1993) and for one virus segment integration into the wasp genome has been un- equivocally demonstrated (Fleming & Summers, 199I). In the case of the ichnovirus of Hyposoter fugitivus physical mapping and Southern blot data also indicated integration of virus DNA

:87! 0001-4055 © 1996 SGM

Page 2: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

into male cellular D N A (Xu & Stoltz, 1991). For bracoviruses

the mechanism of transmission of virus D N A (integrated into

wasp genomic D N A or episomal) is still unclear.

W e recent ly characterized the bracovirus of Chelonus

inanitus and observed that its g e n o m e consis ted of at least 10

different segments (sizes be tween 7 and 31 kbp) which appear

to be singly encapsidated (Albrecht et aI., 1994). Here we show

for a 12 kbp segment that it is in tegrated in the wasp genomic

D N A and is only excised and circularized in females in the late

pupal and adult stages. W e also show that after excision of

virus D N A the wasp genomic D N A is rejoined. Sequence

analyses of the in tegra t ion /exc i s ion regions revealed the

existence of two types of excision patterns and we propose a

mode l of h o w these might be generated.

Methods • Insects. C. inanitus (Braconidae, Hymenoptera) are solitary egg- larval parasitoids and were reared on one of their natural hosts, Spodoptera littoralis (Noctuidae, Lepidoptera). The C. inanitus are highly inbred as they are all descendants from one or two females from which the colony was established in 1989. Pupal-adult and ovary development of C. inanitus as well as designation of pupal stages have been described and it was shown that ovary development is strictly correlated with the external pigmentation pattern (Albrecht el al., 1994). Adult S. liltoralis and a semi-artificial diet were kindly given to us by CIBA-Geigy (Basel). Details of the biology and methods of rearing this parasitoid-host system are described in Grossniklaus-B/irgin e~ al. (1994).

• Calyx fluid collection, DNA isolation and description of clones. Calyx fluid was collected from excised female reproductive tracts and DNA was isolated as described (Albrecht et al., 1994). Cloning and physical mapping of the 12 kbp segment of the polydnavirus of C. inanitus (CiV12) used in this study is also described in Albrecht et al. (1994). For generation of pCR1 clones the PCR product obtained with primers LR/RL (see Fig. 2) and DNA of adult females was polished with T4 polymerase and ligated into a SmaI-cut pSP64 vector. Methods were as described in Ausubel et al. (1994).

• Construction of C. inonitus genomic library. Total nucleic acids were isolated from 100 adult male wasps (the sex of each male was visually rechecked before extraction). Insects were frozen in liquid nitrogen and ground in a mortar with a pestle to a fine powder which was then suspended in 10 ml homogenization solution (150 mM-EDTA, 5 g/1 sodium tauryI sarcosinate, 30 g/I saccharose and 2 g/1 SDS). After addition of 20 mg proteinase K, the solution was incubated at 37 °C for 5 h. Then the sample was extracted twice with 10 ml buffer-saturated phenol, twice with 10 ml phenol-chloroform-isoamyl alcohol (25:24:1) and once with 10 ml chloroform-isoamyl alcohol (24:1). To mix the two phases the vial was put on a seesaw for 10 min. Nucleic acids were precipitated with 25 ml of cold ( - 20 °C) ethanol after addition of 1 ml 3 M-sodium acetate pH 75. Total DNA was then partially digested with Sau3AI and loaded onto a NaCI gradient (1"25-5 M in 10 mM-Tris-HC1 pH 7"5, 5 mM-EDTA). After centrifugation in a TST 41.14 rotor (Kontron) at 39000 r.p.m, for 3 h at 20 °C, the gradient was fractionated from bottom to top in 1 ml samples. Fractions containing fragment sizes between 10 and 20 kbp were pooled, DNA was precipitated and ligated into BamHI-cleaved EMBL3 arms (Promega) and packed using a Gigapack II kit (Promega). The library was screened with a mixture of the 944 bp and 924 bp EcoRI fragments of clone 1G10 from segment CiVI2 with methods described by Sambrook et al. (1989).

• PCR. DNA was isolated from male or female pupae or from abdomens and heads-thoraces of adults. For separation of head-thorax and abdomen, adult wasps were frozen in liquid nitrogen and divided between abdomen and thorax with a scalpel. Twenty specimens (the sex was checked visually for each individual) were homogenized in 2 ml homogenization solution (see above) without SDS with a Polytron PTI0-35/PTA 10s (Kinematica) for 2 min (level 4). Between each batch, the polytron was rinsed extensively: twice in distilled H20, once in 3 M- HC1, once in 3 M-NaOH, once in distilled H~O, once in 2 M-HI~O ~ and twice in H20. After addition of 5 mg proteinase K and 20 ~1 SDS (200 g/l) the samples were incubated at 37 °C for 4 h. Phenol extractions were as described above and nucleic acids were precipitated with ethanol. PCR reactions were carried out in a volume of 50,1 with 10 ng or I00 ng of template DNA, i U of DyNAzyme DNA PoIymerase (Finnzymes), 0"2 laM-primers (see Fig. 2) and 100 ~aM of each dNTP in a DNA Thermal Cycler (Perkin Elmer). The denaturation temperature was 95 °C, annealing was done at 60 °C, each step lasting 1 min, and synthesis at 72 °C for 2 min. Aliquots of 5 ~l were taken from the reaction after 30 cycles and electrophoresed in MetaPhor agarose (35 g/L FMC Bio Products) gels in TBE buffer according to Sambrook et al. (1989). Gels were then stained with ethidium bromide. The Expand Long Template PCR System was used according to the manufacturer's instructions (Boehringer Mannheim). Denaturation was done for I0 s at 94 °C, annealing for 30 s at 60 °C and elongation for 15 min at 68 °C in the first 10 cycles. In the next 20 cycles, the elongation time was increased by 20 s in each cycle. Aliquots of 10/al were taken from the reaction and eleetrophoresed in MP agarose gels (10 g/1; Boehringer Mannheim).

• Southern dot blot. DNA of male and female pupae was isolated as described above and was further digested with 100 ~tg/ml RNase A at 37 °C for 30 min followed by an incubation with 1 mg/ml proteinase K and 10 mg/ml SDS at 37 °C overnight. Phenol extractions and ethanol precipitations were done as described above. One ~,g of heat-denatured DNA in 5 x SSC (0"75 M-NaC1, 75 mM-sodium citrate) was dotted onto a positively charged nylon membrane (Boehringer Mannheim) using a dotting manifold (Bio-Rad). DNA was cross-linked to the nylon membrane by irradiation with UV light (160 000 laJ/cm~; UV Stratalinker 2400, Stratagene). The blots were prehybridized for 4 h at 41 °C in 5 x SSPE (1 x = I50 mM-NaC1, 10 mM-NaH2PO 4, 1 mM-EDTA pH 7"4), 2 x Denhardt's solution (1 x = 0-2 g / l Ficoll 400, 0"2 g/1 polyvinyl pyrrolidone, 0"2 g/1 BSA), 1 g/1 SDS, 100 gg/ml denatured herring sperm DNA and 50% formamide. The blots were hybridized at 41 °C ovemight in the same buffer, which in addition contained approximately 105 c.p.m. (Cerenkov) per ml of [:~-3~PldCTP-labelled HindIII-digested calyx fluid DNA. Labelling was done with the Random Primed DNA Labeling Kit according to the manufacturer (Boehringer Mannheim). The blots were washed in 2 x SSPE containing 2 g/1SDS at room temperature and in 0'2 x SSPE containing 2 g/1 SDS at 65 °C. The nylon membranes were exposed to a Storage PhosphorScreen (Molecular Dynamics) and quantitatively analysed on a PhosphorImager (Molecular Dynamics).

• DNA s e q u e n c e analysis. Nucleotide sequences were determined by the dideoxynucleotide method (Sanger el at., 1977) using the Sequenase kit version 2.0 (USB). Sequence data were analysed with the University of Wisconsin Genetics Computer Group software (release 8).

Results The male C. inanitus genomic library was screened with the

944 bp and 924 bp EcoRI f ragments of clone I G 1 0 of segment

CiV12. The physical map of the genomic clone ;~A2I is shown

187,

Page 3: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

3B6

1F3 1A2 1B10 1G3 1B12" 1C1" 1C8"

1G10 1C9 2A2 1B9"

} }

T SalI

t HindIII

EcoRI

I I l k b

1 ~ t 1 ~ (~ CiV12

- - - T 1 T ( ~ t (~ ? ~ I XA21

Fig. 1. Restriction maps of CiV12 and genomic clone ,~A21. In the CiVJ 2 map the various clones as obtained by partial digestion of virus DNA with Hindlll or EcoRI and subsequent ligation with Hindlll-cut pSP65 or EcoRI-cut pSP64 are given together with the orientation of the sP6 promoter (arrows). For details of cloning CiVJ 2 see Albrecht et aL (1994). Clones with an asterisk lack the ffcoRI site marked with an asterisk (sequence analyses revealed that this results from a point mutation). Bars denote regions which were sequenced and the dotted lines denote the ~ arms.

LL

C? LR U_ ~ K~_

- * I * - " * I * "

t.R ~_ I

Fig. 2. Design of primers for PCR. The first letter designates the junction (L, left; R, right) and the second letter the direction of elongation (L, R). LL/RR thus amplifies excised circular virus DNA, LR/LL and RL/RR the left and right junction, respectively, and LR/RL the rejoined genomic DNA. Thin lines represent virus DNA and thick lines wasp DNA.

together with that of the entire CiV12 clone (Fig. 1). It shows that clone ,tA21 contains a complete collinear copy of CiV12 which is linearized at a site within the 924 bp EcoRI fragment. This indicates that segment CiV12 is integrated in genomic C. inanitus DNA. The regions around the left and right junctions were sequenced in CiV12 clone IGI0 and genomic clone 2A21 (Fig. 1); the sequence data have been deposited in the EMBL database and a small portion is shown in Fig. 6 and will be discussed later. On the basis of the sequence data we designed primers for PCR which would allow us to distinguish between the integrated and excised/cyclized virus DNA and which would also reveal rejoining of genomic DNA after excision of virus DNA (Fig. 2). Sequences and positions of primers are available in the EMBL database and are indicated as LL, RR, LR and RL. The following primer combinations were used: LL/RR (for circular CiV12 DNA, expected length 265 bp), LR/RL (for rejoined genomic DNA, expected length 267 bp), LL/LR (left junction, expected length 300 bp) and RR/RL (right junction,

expected length 232 bp). With these primer combinations male and female pupae at various stages of pupal-adult develop- ment, abdomens and head-thoraces of males and females and calyx fluid were analysed; as positive controls the respective clones were used, and negative controls were from PCR reactions carried out without template DNA (Fig. 3). The excised/cyclized form of CiVI2 DNA was found in all females after pupal stage 3 and also in calyx fluid, but not in males (Fig. 3 a). Accordingly, in females after pupal stage 3 we observed a PCR product with a length of 267 bp with the primer com- bination LR/RL (Fig. 3 b) indicating rejoining of genomic wasp DNA after excision of virus DNA. With thoraces-heads of females a strong band was seen with primers LL/RR (Fig. 3 a) and a weak band with primers LR/RL (Fig. 3 b). In another independent experiment with head-thoraces of females only a weak band was seen with primers RR/LL and no band with primers LR/RL; in still another experiment weak bands were seen with both primer combinations (data not shown). We do not know whether these bands are due to contamination of the head-thorax fraction with the calyx-containing abdominal fraction during the process of tissue collection. Otherwise these results would suggest that head and/or thorax of females contain a tissue which excises and cyclizes virus DNA. The right (Fig. 3 c) and the left (Fig. 3 d) junctions were detected in all stages of both male and female pupae, in head-thorax and abdomens of adults and also in calyx fluid. The latter is probably due to the presence of traces of DNA of ovarian tissue as, for the collection of calyx fluid, ovaries had to be punctured at various places with forceps.

We then investigated whether the entire CiV12 segment including flanking wasp genomic sequences could be amplified

-~87~

Page 4: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

(a) Male Female (c)

M 1 2 3 4 5 6 T A 1 2 3 4 5 6 T A C G L P N M M 1 2 Male Female

3 4 5 6 T A 1 2 3 4 5 6 T A C G L P N M

(b) Male Female (d) Male Female

M 1 2 3 4 5 6 T A 1 2 3 4 5 6 T AC G L P NM M 1 2 3 4 5 6 T A 1 2 3 4 5 6 T AC G L P NM

Fig. 3. Amplification of excised circular virus DNA with primers LL/RR (o), of the rejoined genomic DNA with primers LR/RL (b), of the right junction with primers RR/RL (c) and of the left junction with primers LL/LR (d). Ten ng of DNA was used in (a) and (e) and 1 O0 ng in (b) and (d) (these differences compensate for a lower effectiveness of primer LR with genomic DNA). Lane numbers designate stages in pupal-adult development as described in Albrecht et cd. (1994). T, thorax-head of adults; A, abdomens of adults; C, calyx fluid; G, clone 1 G10 of CiVl 2 (1.66 pg) ; L, clone 2A21 (4.58 pg) ; P, clone pCR1, the cloned PCR product of primers LR/RL (0.36 pg); the quantities of DNA used corresponded to 105 molecules. N, no DNA; M, pBR322 cut with Hpall as a marker.

1 2 3 4

kbp

23.13

9.42

6.55

4.36

2.32 2.02

0-56

Fig. 4. Amplification of the entire integrated CiVl 2 segment with primers LR/RL by means of the Expand Long Template PCR system. Lane 1, 1 O0 ng DNA of female pupae at stage 4; lane 2, 4.54 pg (105 molecules) of clone 2A21 ; lane 3, no DNA; lane 4, Hindlll-digested 2 DNA.

with the primer combination LR/RL using the Expand Long Template PCR System. DNA of female pupae of stage 4 (Fig. 4, lane I) and of clone 2~A2I (Fig. 4, lane 2) yieIded the same product of the expected length of slightly more than 12 kb. With pupal DNA the 267 bp PCR product representing the rejoined genomic D N A was also seen (Fig. 4, lane 1). This confirms that the entire CiV12 segment is integrated in genomic wasp D N A as it is in clone 2A21.

To investigate to what extent virus DNA accumulates in the course of pupal-adult development we analysed the same DNA from male and female pupae as in Fig. 3 by Southern dot blot hybridization using HindllI-digested calyx fluid DNA as probe, As a negative control, DNA from non-parasitized S. littoralis was used and as a positive control HindIII-digested calyx fluid DNA was employed (Fig. 5 a). The results revealed a strong signal with calyx fluid DNA, no signal with DNA of non-parasitized S. IittoraIis and a signal of intermediate intensity with male pupae of all stages and female pupae up to stage 3. With DNA of later stages of female pupae stronger signals were detected and computation of the intensities of the dots using a Phosphorlmager (Fig. 5 b) indicated a rapid increase of virus DNA between pupal stages 3 and 5.

Sequence analyses around the excision region of CiV12 clone 1G10 and the junctions of clone 2A21 revealed the presence of an imperfect consensus sequence of 15 nucleotides in CiV12 and in each terminus of 2A2I (sequences deposited in

'.87~

Page 5: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

(a) P1 P2 P3 P4 P5 P6

Neg. Pos.

(b) ,

, 4 t _ 2o +___ P1 P2 P3 P4 P5 P6

Pupal stages

Fig. 5. Hybridization of Hindl l l -digested calyx fluid DNA to 1 t~g of DNA of male and female pupae of stages 1-6 (described by Albrecht et el., 1994). (a) Southern dot blot. Neg., negative control, 1 #g of DNA from 5th instar non-parasitized S. fittorelis larvae. Pos., positive control, 20 ng of calyx fluid DNA. (b) Quantification of signals on a Phosphorlmager. Dots represent females, squares represent males.

ATA CiV12

TAC

gaacaagtcgtAAATACTAAT~Tatctataaggtaa

gaacaagtcgtAAATA~-~TATA~Tatctataaggtaa

right

left

gaacaagtcgtAAATACTAATAGCTTTTAAACTTCGAAT

GAATTAATCTGAAATT_CTATACGCTTatctataaggtaa

ATA GAAT TAAT CT GAAATTCTAATAGCTTT TAAAC T T C GAAT

TAC GAAT TAAT CT GAAATT_CTATAC~CTT T TAAAC T T C GAAT

Fig. 6. Sequence analyses of the junction region in all 1 2 CiVl 2 clones (see Fig. 1), right and left junction in clone ~.A21 and in 11 pCR1 clones (rejoined genomic DNA), Lower case letters ('a') designate virus DNA, roman capital letters ('A') designate wasp genomic DNA and bold capital letters ('A') designate the excision region. Underlined letters denote divergent nudeotides. The triplets ATA or TAC categorize the sequence variants found in the CiVl 2 clones (eight TAC, four ATA) and in the pCR1 clones (nine TAC, two ATA). 'Right' and 'left' are as defined in Fig. 1,

data library). To gain more information on the integration/ excision site, a region of approximately 250 bp was sequenced in all i2 CiV12 clones (Fig. I) and also in I1 pCR1 clones (these were obtained by cloning of PCR product LR/RL) representing the rejoined genomic DNA. The parts encompassing the consensus sequences are shown together with the corre- sponding sequences of the genomic 2A2I clone in Fig. 6. The data revealed an imperfect direct repeat sequence of 15 nucleotides between the CiVI2 clones, the pCR1 clones and the left and right junctions of 2A2I. We found that at position 5 the right junction and all virus clones had an A residue while the left junction and all clones of rejoined genomic DNA had a T. Between positions 9-11 two sequence types (ATA or TAC) were found in CiV 12 and pCR1 clones, corresponding to the right and left junction of 2A21, respectively. Of the 12 sequenced CiVI2 clones eight were of the TAC type, namely 3B6, 1A2, 1B10, 1G3, 1C1, 1C8, 1G10 and 2A2, and four of the ATA type, namely 1F3, IBI2, IC9 and 1B9 (for description

of clones see Fig. 1). Of the 11 pCR1 clones sequenced nine were of the TAC type and two of the ATA type. One possibility on how these findings might be interpreted is shown in Fig. 7. According to this model the wasp DNA would form a loop in such a way as to juxtapose the terminal repeats for recombination. For formation of the TAC type of CiV12, recombination would take place between position 5, 6, 7 or 8 resulting in a rejoined site of the ATA type (Fig. 7a). For formation of the ATA type, recombination would occur at position 11, 12, 13, 14 or 15 resulting in a rejoined site of the TAC type (Fig. 7 b).

Discussion Our data demonstrate that a I2 kbp segment of the

polydnavirus of the braconid wasp C. inanitus is integrated into wasp genomic DNA (Figs 1, 3 and 4). This is the first demonstration of integration for a bracovirus. Integration has so far been demonstrated for two ichnoviruses, those of C. sonorensis (Fleming & Summers 1986, 1991) and Hyposoler fugilivus (Xu & Stoltz, 199I). Thus, chromosomal integration of virus DNA appears to be common to both genera of the family Polydnaviridae. The PCR results indicated that the integrated form of virus DNA, exemplified by CiV12, was present in all male and female stages and tissues investigated (Fig. 3 c, d). The circular (extrachromosomal) form of virus DNA, however, was found in females after pupal stage 3 and in calyx fluid, but not in males (Fig. 3 a). In the ichneumonids C. sonorensis (Fleming & Summers, i986) and H.f~giffvus and the braconid C. melanoscela (StoItz et aI., 1986) hybridization experiments also indicated the presence of small amounts of extrachromosomal virus DNA in male tissues. Our experimental approach was different and it is conceivable that trace amounts of circular virus DNA would have remained undetected under the conditions we used. Nevertheless, H. fugitivus and C. melanoscela crossing experiments involving isogenic virus DNA markers suggested

>_87~

Page 6: Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female

(a)

<AAATACTATACGCTT~'~ AAATTCTAATAGCTT

(b)

A~AATACTAAT I Ic~'~

<***T^CT*̂ T^0CTTY AAATTCTATACGCTT-

Fig. 7. Model to illustrate the hypothetical juxtaposition of left and right direct repeats and the possible sites of recombination to yield either the TAC variant of CiVl 2 and ATA variant of rejoined genomie DNA (a) or the ATA variant of CiVl 2 and the TAC variant of rejoined genomic DNA (b).

that the structure of the virus genome is determined by the integrated form of virus DNA rather than by extra- chromosomal molecules (Stoltz, 1990). Thus, the integrated virus DNA appears to represent the point of departure of the amplification/replication of the virus DNA. It is not yet clear how this occurs but our results add substantial new in- formation. The PCR data obtained with primers LR/RL (Fig. 3 b) and sequence analyses of the cloned PCR product (Fig. 6 and sequences deposited in data library) indicated that, after excision of virus DNA, the genomic DNA is rejoined; this has not yet been reported for any polydnavirus. Our data are compatible with a scenario in which the direct repeats of 15 nucleotides at both termini of the integrated copy (Fig. 6) recombine during replication, resulting in excision and circu- larization of the virus DNA and rejoining of the genomic DNA (Fig. 7). The model in Fig. 7 proposes recombination sites which would lead to the two observed sequence types (ATA, TAC) in virus and rejoined genomic DNA. The data are also

compatible with more complex mechanisms of site-specific recombination, e.g. involving staggered DNA ends being joined with or without additional nucleotide excision. In the only other polydnavirus-wasp system where integration/ excision regions have been sequenced, the ichnovirus of C. sonorensis, some similar observations were made. Short im- perfect direct repeats of 59 nucleotides were found at both termini of integrated virus DNA and a single copy was found in the virus DNA (Fleming & Summers, 1990, 1991; Fleming & Krell, 1993). Rejoining of genomic DNA was not inves- tigated in this system but the presented sequence data are compatible with the model of excision that we propose for the bracovirus of C. inanitus in Fig. 7. Thus, it is conceivable that the mode of virus DNA replication follows the same principle in both genera of the family Polydnaviridae.

Excision and cyclization of virus DNA was seen to begin in female pupae at stage 3 (Fig. 3 a) and, from this stage on, the quantity of virus DNA increased rapidly (Fig. 5 b). At this stage, eyes, ocelli and mandibles of the pupae are pigmented, the nutritive cords become long in the ovary and maturing oocytes begin to be discernible in the ovarioles (Albrecht et al., 1994). Histological investigations revealed that the calyx cells are discernible at this stage and are characterized by a large nucleus; electron microscopy analyses showed that in the nucleus the first virions appeared at this stage (T. Wyler & B. Lanzrein, unpublished results). In the ichneumonid C. sonorensis circular virus DNA first appeared in a similar stage of pupal- adult development (Webb & Summers, 1992), coincidental with the appearance of virions (Norton & Vinson, 1983). In C. sonorensis it was hypothesized on the basis of thoracic ligations and in vitro applications of the moulting hormone 20- hydroxyecdysone that this hormone might regulate virus DNA replication (Webb & Summers, 1992). In C. inanitus, measurements of fluctuations of various ecdysteroids in pupal- adult development revealed that 20-hydroxyecdysone in- creased rapidly after pupation, reached a peak between stage 1 and 2 and then continuously decreased; ecdysone fluctuated at a lower level until stage 4 and then decreased (C. Grossniklaus, V. Meyer & B. Lanzrein, unpublished results). Histological data indicated that the calyx cells differentiate between stage I and 2 (T. Wyler & B. Lanzrein, unpublished results); it is thus conceivable that 20-hydroxyecdysone plays a role in initiating the differentiation of the calyx cells, a process which is most likely a prerequisite for virus replication to occur.

We should like to thank Prof. D. Gerling, Tel Aviv University, Israel, for having collected for us the progenitors of our C. inanitus colony and Rita Pfister-Wilhelm for assistance in the collection and staging of the pupae used for DNA isolation. We should also like to express our thanks to CIBA-Geigy (Basel) for providing us with adult S. littoralis and the diet used for rearing the larvae. Financial support by the Swiss National Science Foundation (grant 31-32329.91 and 3100-041828.94 to B.L.) is also gratefully acknowledged.

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References Albrecht, U., Wyler, T., Pfister-Wilhelm, R., Gruber, A., Stettler, P., Heiniger, P., Kurt, E., Schfimperli, D. & Lanzrein, B. (1994). Po[ydnavirus of the parasitic wasp Chelonus inanitus (Braconidae): characterization, genome organization and time point of replication. Journal of General Virology 75, 3353-3363.

Ausubel, F. H., Brent, R., Kingston, R. E., Hoore, D. D., Seidman, J. G., Smith, J. H. & Struhl, K. (1994). Current Protocols in Molecular Biology, vol. 1, chapter 3. Chichester: John Wiley & Sons.

Fleming, J. A. G. {1992). Polydnaviruses- mutualists and pathogens. Annual Review of Entomology 3 7, 401-425.

Fleming, J.A.G. & Summers, H.D. (1986). Campoletis sonorensis endoparasitic wasps contain forms of Campoletis sonorensis virus-DNA suggestive of integrated and extrachromosomal polydnavirus DNAs. Journal of Virology 57, 552-502.

Fleming, L A. G. & Summers, H. D. (1990). The integration of the genome of a segmented DNA virus in the host insect's genome. In Molecular Insect Science, vol. 1, pp. 99-105. Edited by H. H. Hagedorn, J. G. Hildebrand, M.G. Kidwell & J.H. Law. New York and London: Plenum Press.

Fleming, J. A. G. & Summers, H.D. (1991). Polydnavirus DNA is integrated in the DNA of its parasitoid wasp host. Proceedings of the National Academy of Sciences, USA 88, 9770-9774.

Fleming, J.A.G. & Krell, P.J. (1993). Polydnavirus genome organization. In Parasites and Pathogens of Insects, vo[. 1, pp. 189-225. Edited by N. E. Beckage, S. N. Thompson & B. A. Federici. San Diego: Academic Press.

Francki, R. I. B., Fauquet, C. H., Knudson, D. L. & Brown, F. (editors) (1991). Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Wien & New York: Springer-Verlag.

Grossniklaus-Biirgin , C., Wyler, T., Pfister-Wilhelm, R. & Lanzrein, B. (1994). Biology and morphology of the parasitoid Chelonus inanitus (Braconidae, Hymenoptera) and effects on the development of its host

Spodoptera littoralis (Noctuidae, Lepidoptera). Invertebrate Reproduction and Development 25, 143-158.

Lavine, M.D. & Beckage, N.E. (1995). Polydnaviruses: potent mediators of host insect immune dysfunction. Parasitology Today 11, 368-378.

Lawrence, P. O. & Lanzrein, B. (1993). Hormonal interactions between insect endoparasites and their host insects. In Parasites and Pathogens of Insects, vol. 1, pp. 59-86. Edited by N. E. Beckage, S. N. Thompson & B. A. Federici. San Diego: Academic Press.

Norton, W. N. & Vinson, S. B. (1983). Correlating the initiation of virus replication with a specific pupal developmental phase of an ichneumonid parasitoid. Cell and Tissue Research 231, 387-398.

Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbour Laboratory.

Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5467.

Stoltz, D.B. (1990). Evidence for chromosomal transmission of polydnavirus DNA. Journal of General Virology 71, 1051-1056.

Stoltz, D.B. (1993). The polydnavirus life cycle. In Parasites and Pathogens of Insects, vol. I, pp. 167-187. Edited by N. E. Beckage, S. N. Thompson & B. A. Federici. San Diego: Academic Press.

Stoltz, D. B. & Vinson, S. B. (1979). Viruses and parasitism in insects. Advances in Virus Research 24, 125-171.

Stoltz, D. B., Guzo, D. & Cook, D. (1986). Studies on polydnavirus transmission. Virology 155, 120-I31.

Webb, B.A. & Summers, H. D. (1992). Stimulation of polydnavirus replication by 20-hydroxyecdysone. Experientia 48, 1018-1022.

Xu, D. M. & Stoltz, D. (t991). Evidence for a chromosomal location of polydnavirus DNA in the ichneumonid parasitoid Hyposoter fugitivus. Journal of Virology 65, 6693-6704.

Received 2 April 1996; Accepted 4 July 1996

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