Phylogeographic and genome-wide investigations of Vietnam ethnic groups reveal signatures of complex historical demographic movements Pischedda S, Barral-Arca R, Gómez-Carballa A, Pardo-Seco J, Catelli ML, Álvarez-Iglesias V, Cárdenas JM, Nguyen ND, Ha HH, Le AT, Martinón-Torres F, Vullo C, Salas A Supplementary Data Figure S1. Phylogenetic networks of HVS-I mtDNA Vietnamese sequences. Figure S2. Maximum parsimony trees based on CR sequences representing haplogroup M7b1a1f (A) and F1f (B). See Figure 3 for more information. Figure S3. EBSPs (with 95% CI) of haplogroup F1f and M7b1a1f obtained from complete mitogenomes. Figure S4. EBSP of main Vietnamese ethnics. Figure S5. MDS plot of IBS values considering different SEA populations (Table S2) and one European (CEU) and one African population (YRI).
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Phylogeographic and genome-wide investigations of Vietnam ethnic groups reveal signatures of complex historical demographic movements
Pischedda S, Barral-Arca R, Gómez-Carballa A, Pardo-Seco J, Catelli ML,
Álvarez-Iglesias V, Cárdenas JM, Nguyen ND, Ha HH, Le AT, Martinón-Torres
F, Vullo C, Salas A
Supplementary Data
Figure S1. Phylogenetic networks of HVS-I mtDNA Vietnamese sequences.
Figure S2. Maximum parsimony trees based on CR sequences representing
haplogroup M7b1a1f (A) and F1f (B). See Figure 3 for more information.
Figure S3. EBSPs (with 95% CI) of haplogroup F1f and M7b1a1f obtained from
complete mitogenomes. Figure S4. EBSP of main Vietnamese ethnics.
Figure S5. MDS plot of IBS values considering different SEA populations (Table
S2) and one European (CEU) and one African population (YRI).
Figure S1.
Figure S1.
Figure S2.
Figure S3.
0 2000 4000 6000 8000 10000
5e+0
32e
+04
5e+0
42e
+05
5e+0
52e
+06
Years before present
Fem
ale
effe
ctive
pop
ulat
ion
size
x g
M7b1a1f MeanM7b1a1f Median
0 2000 4000 6000
1e+0
35e
+03
2e+0
45e
+04
2e+0
55e
+05
Years before present
Fem
ale
effe
ctive
pop
ulat
ion
size
x g
F1f MeanF1f Median
A
B
Figure S4.
Figure S5.
0.00 0.05 0.10 0.15
−0.1
0−0
.05
0.00
0.05
Dimension 1 (10.58%)
Dim
ensi
on 2
(3.8
7%)
0.00 0.05 0.10 0.15
−0.1
0−0
.05
0.00
0.05
Dimension 1 (10.58%)
Dim
ensi
on 2
(3.8
7%)
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EuropeCEUAfricaYRIChinaCHSCDXMalaysiaBidayuhNegritoMalayProto−MalayPhilippinesAytaAgtaAtiIrayaMinanubuMamanwaFilipinoThailandHmong (Miao)KarenLawaMlabriMonPaluangPlangTai KhuenTai LueH'tinTai YuanTai YongYaoVietnamKHV
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