ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID

ORCID Participant Meeting, Harvard 18 May 2011

http://www.orcid.org G. A. Thorisson, University of Leicester

The digital scholar, identityon the Web and ORCID

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Gudmundur A. Thorisson <[email protected]> Tony Brookes bioinformatics group

Departments of GeneticsUniversity of Leicester

-- Outline --• How did I get sucked into this stuff?

• Ongoing/planned genetic researcher data pub. projects w/ ORCID component

• How might ORCID fit into the broader online identity landscape?

This work can be freely copied, redistributed and adapted, as long as proper attribution is given

Wednesday, 18 May 2011

mailto:[email protected]




Prologue

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Prof Anthony J Brookes GEN2PHEN coordinatorChair, Bioinformatics and GenomicsDepartment of GeneticsUniversity of Leicester, UK




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The data sharing problem

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Lack of incentives for sharing

• Effort required to prepare, package and submit datasets to public repositories

• Time better spent writing papers & grants

• All sticks (funders, journals) - no carrots

• Need incentives - treat data as publications, credit creators

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“[...] Many of the issues regarding data availability can be addressed if the principles of “publication” rather than “sharing” are applied. However, online data publication systems also need to develop mechanisms for data citation and indices of data access comparable to those for citation systems in print journals”

Costello, M. Motivating Online Publication of Data. BioScience (2009) vol. 59 (5) pp. 418-427




ORCID

F67572010

?

ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.

ORCID ID: G-1442-2009J. Smith, Univ. North Pole

ORCID ID: D-2400-2010J. Smith, Luthor Corporation

Name ambiguity => attribution challenges




Projects

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1010

1. Diagnostic laboratories

2. Central ‘clearinghouse’

3. End-users (e.g. LSDB curators)

Publish data Retrieve Atom feeds

Submi&ng muta,ons from diagnos,c labs using “Café RouGE enabled” so<ware via simple bu@on click

Data are shared with diverse 3rd par,es via manual retrieval or automated feed-‐based monitoring/retrieval

Cafe Variome - facilitating exchange of genetic data




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dbSNP (coding)UniProt

PhenCode

Submission from diag. lab

Metadata describing varia,on data published elsewhere

Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI

✔

×

DOI assigned to incoming data upload

Already stable IDs so no DOI assignedA@ribu,on given to data submi@ers

via ORCID unique iden,fier




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dbSNP (coding)UniProt

PhenCode

Submission from diag. lab

Metadata describing varia,on data published elsewhere

Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI

✔

×

DOI assigned to incoming data upload

Already stable IDs so no DOI assignedA@ribu,on given to data submi@ers

via ORCID unique iden,fier




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G. Thorisson, Univ. [email protected]

ORCID ID: A-883-2010

4x variants in BRCA2gene in patient X

Publication credit for Cafe Variome deposits

CV user has linked his user account with his ORCID profile








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G. Thorisson, Univ. [email protected]

ORCID ID: A-883-2010

4x variants in BRCA2gene in patient X

G. A. Thorisson (A-883-2010). 4x variants in BRCA2 gene. Published online via Cafe Variome. 21 January (2011) doi:10.1255/caferouge.BRCA2-2352354

=> http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354

Publication credit for Cafe Variome deposits

CV user has linked his user account with his ORCID profile








http://test.caferouge.org/atomserver/v1/caferouge/mutations/2352354

http://test.caferouge.org/atomserver/v1/caferouge/mutations/2352354



GWAS nanopublications• Foray into semantic publishing

– GWAS Central as ‘nano-publisher’

– variant<->disease assertion as nanopub

rs19243 <associatedWith> Type II diabetes + condition & provenance

• Provenance part to include:– Contributors IDs

– Contributor roles:

• Author(s) on original GWAS paper

• Curator

• Registrant

• Citability: register DOI for nanopub?

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ORCID collaborative development

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ORCID collaborative development

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Online identity and attribution

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Key ORCID use case: submitting manuscript to journal

Attribution link deposited into ORCID:

A-883-2010 <created> 10.4259/psycho-review.gbilder2010.Foobar

Bilder, G. Foobar (A-883-2010) study of cracked pots in Uruguy. Psychoceramics Review. Published online May 23 2010. doi:10.4259/psycho-review.gbilder2010.Foobar




• But, there’s lots more ways of contributing to science

• I want be acknowledged for ....

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... my data publications in Dryad and other public repos

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.. my nanopublications

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!" #"$%%&'()*" +"




.. my nanopublications

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!" #"$%%&'()*" +"




... my Taverna analytical workflows and other digital research objects published on myExperiment

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... my Wikipedia contributions

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... my contributions to open-source software projects

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• etc. etc. etc.

• In short, ‘I wanna’ aggregate all those contributions and showcase me as a ‘digital scholar’

Challenge: Identity fragmentation




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How do I link all those different sub-identities together that matter to me professionally?

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Technologically, this is not rocket science

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Technologically, this is not rocket science

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Single sign-on with social IDs

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What’s love ORCID gotta do with it?An online identity for the digital scholar,

centred on contributor ID?

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What’s love ORCID gotta do with it?An online identity for the digital scholar,

centred on contributor ID?

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ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.

http://mummi.myopenid.com




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GEN2PHEN Consortiumhttp://www.gen2phen.org/about-gen2phen/partners

Prof Anthony J. Brookes Bioinformatics Group

This work has received funding from the European Community's Seventh Framework Programme (FP7/2007-2013)under grant agreement number 200754 - the GEN2PHEN project.

Acknowledgements

Contact me! Gudmundur ‘Mummi’ Thorisson

<[email protected]> |<[email protected]>http://friendfeed.com/mummi

http://www.linkedin.com/in/mummihttp://www.twitter.com/gthorisson


http://www.gen2phen.org/about-gen2phen/partners

http://www.gen2phen.org/about-gen2phen/partners





http://friendfeed.com/mummi

http://friendfeed.com/mummi

http://www.linkedin.com/in/mummi

http://www.linkedin.com/in/mummi

http://www.twitter.com/gthorisson

http://www.twitter.com/gthorisson

ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID

Education

orcid orcid id

university of leicesterhttp

uk orcid participant

orcid use case

north pole orcid id

projects w orcid component

data citation

data publications