Open Annotation in The CHARMe Project Raquel Alegre I Annotate 2014 3 rd and 4 th April 2014 – San Francisco Scientific S/W Engineer University of Reading, UK
Open Annotation in the CHARMe Project for the I Annotate Conference
Nov 12, 2014
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Open Annotation in The CHARMe Project
Raquel Alegre
I Annotate 2014
3rd and 4th April 2014 – San Francisco
Scientific S/W Engineer
University of Reading, UK
Summary
• Introduction to CHARMe
Summary
• Introduction to CHARMe
• What’s a climate dataset?
Summary
• Introduction to CHARMe
• What’s a climate dataset? • Use of Open Annotation in CHARMe
Summary
• Introduction to CHARMe
• What’s a climate dataset? • Use of Open Annotation in CHARMe
• CHARMe’s basic use case
Summary
• Introduction to CHARMe
• What’s a climate dataset? • Use of Open Annotation in CHARMe
• CHARMe’s basic use case
• CHARMe’s advanced tools
Summary
Introduction to CHARMe
Introduction to CHARMe
Post-fact annotations
Introduction to CHARMe
Post-fact annotations
External events
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Data policy
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Data policy
Results of assessments
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Data policy
Results of assessments
CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Data policy
Results of assessments
CHARMe
Introduction to CHARMe
Post-fact annotations
External events
Data Provenance
User feedback
Data policy
Results of assessments
Sharing knowledge about Climate Data to help users judge fitness-for-purpose
CHARMe
Introduction to CHARMe
CHARMe
Annotation
Metadata
Climate
Dataset
Overlapping volcanic eruption
I recently published a paper about this
dataset
CHARMe basic OA use case
Does anyone know about other related
datasets? http://www.someURL.com/dataset
CHARMe
Annotation
Metadata
Climate
Dataset
Overlapping volcanic eruption
I recently published a paper about this
dataset
CHARMe basic OA use case
Does anyone know about other related
datasets? http://www.someURL.com/dataset
W3C OA is a natural fit for CHARMe…
CHARMe
Annotation
Metadata
Climate
Dataset
Overlapping volcanic eruption
I recently published a paper about this
dataset
CHARMe basic OA use case
Does anyone know about other related
datasets? http://www.someURL.com/dataset
W3C OA is a natural fit for CHARMe… …plus it lets us record motivation, tag, have multiple targets.
CHARMe node
CHARMe node
CHARMe node
3rd party system
Data provider website
• CHARMe will create connected repositories of commentary information
• Annotations stored as triples in “CHARMe nodes”
• Information can be read and entered through websites or web services
CHARMe basic OA use case
CHARMe basic OA use case
CHARMe basic OA use case
CHARMe basic OA use case
CHARMe basic OA use case
What's a Climate Dataset?
Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014
HPLC
PABS
CDOM
SPM
POC - CHN
Chla(fluoro)
Primary production
FRRF
Ed, Lu
ac9
bb6
VSF,bb3
Above water RSR
PAR
Transmissometer
Flow cytometry
Coulter Counter
Phytoplankton counts
CTD
What's a Climate Dataset?
Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014
HPLC
PABS
CDOM
SPM
POC - CHN
Chla(fluoro)
Primary production
FRRF
Ed, Lu
ac9
bb6
VSF,bb3
Above water RSR
PAR
Transmissometer
Flow cytometry
Coulter Counter
Phytoplankton counts
CTD
What's a Climate Dataset?
Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014
HPLC
PABS
CDOM
SPM
POC - CHN
Chla(fluoro)
Primary production
FRRF
Ed, Lu
ac9
bb6
VSF,bb3
Above water RSR
PAR
Transmissometer
Flow cytometry
Coulter Counter
Phytoplankton counts
CTD
What's a Climate Dataset?
Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014
HPLC
PABS
CDOM
SPM
POC - CHN
Chla(fluoro)
Primary production
FRRF
Ed, Lu
ac9
bb6
VSF,bb3
Above water RSR
PAR
Transmissometer
Flow cytometry
Coulter Counter
Phytoplankton counts
CTD
What's a Climate Dataset?
Measurement < 1999 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014
HPLC
PABS
CDOM
SPM
POC - CHN
Chla(fluoro)
Primary production
FRRF
Ed, Lu
ac9
bb6
VSF,bb3
Above water RSR
PAR
Transmissometer
Flow cytometry
Coulter Counter
Phytoplankton counts
CTD
What's a Climate Dataset?
http://svs.gsfc.nasa.gov/vis/a000000/a003800/a003821/flow_flat_sst_2048x1024.mp4
Some advanced use cases...
Climate data users discuss about data:
Some advanced use cases...
Climate data users discuss about data: - Intercompare datasets
- Research on events timing
- Focus on specific areas of the world
Some advanced use cases...
Plankton bloom: “when did it start?”
Some advanced use cases...
Plankton bloom: “when did it start?”
Sediment from rivers: “Where did it come from?”
Some advanced use cases...
Plankton bloom: “when did it start?”
Sediment from rivers: “Where did it come from?”
Reflective bloom: “or is it an image artefact??”
Some advanced use cases...
Plankton bloom: “when did it start?”
Sediment from rivers: “Where did it come from?”
Reflective bloom: “or is it an image artefact??”
Plankton tracing currents: “how deep?”
Some advanced use cases...
Plankton bloom: “when did it start?”
Sediment from rivers: “Where did it come from?”
Reflective bloom: “or is it an image artefact??”
Plankton tracing currents: “how deep?”
Clear blue ocean: “isn’t it nice?”
Some advanced use cases...
CHARMe advanced use cases
Climate data often comes in 2D, 3D and 4D formats
How to refer to a specific subset of these?
OA SVG Selectors are not enough
CHARMe advanced tools
CHARMe advanced tools
CHARMe advanced tools
CHARMe advanced tools
Climate Dataset
Dataset’s
subset
CHARMe
Annotation
Metadata
Let’s update our report.
Could be sediment.
Why these high values?
Subset
Selector
Geographic
Selector
Temporal
Selector
hasTemporalSelector
hasGeographicSelector
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art!
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub.
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions:
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data?
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this?
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this? What RDF ontologies to use?
Conclusions
CHARMe is all about Climate Data, but its use cases are also applicable to many other fields. Even Art! Previous efforts e.g.: MapHub. A few questions: How to annotate 4D data? Is it possible to standardize this? What RDF ontologies to use? Let’s discuss later!
Conclusions
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