Oncology in SNOMED CT NCI Workshop The Role of Ontology in Big Cancer Data Session 3: Cancer big data and the Ontology of Disease Bethesda, Maryland May 13, 2015 Olivier Bodenreider Lister Hill National Center for Biomedical Communications Bethesda, Maryland - USA
16
Embed
Oncology in SNOMED CT · 2015-05-13 · Oncology in SNOMED CT NCI Workshop The Role of Ontology in Big Cancer Data Session 3: Cancer big data and the Ontology of Disease Bethesda,
This document is posted to help you gain knowledge. Please leave a comment to let me know what you think about it! Share it to your friends and learn new things together.
Transcript
Oncology in SNOMED CT
NCI Workshop The Role of Ontology in Big Cancer Data
Session 3: Cancer big data and the Ontology of Disease Bethesda, Maryland
May 13, 2015
Olivier Bodenreider
Lister Hill National Center for Biomedical Communications Bethesda, Maryland - USA
Lister Hill National Center for Biomedical Communications 2
Disclaimer
“The views and opinions expressed do not necessarily state or reflect those of the U.S. Government, and they may not be used for advertising or product endorsement purposes”
Lister Hill National Center for Biomedical Communications 3
SNOMED CT and oncology
SNOP (~1965) Systematized Nomenclature of Pathology
SNOMED International (~1990) Morphology and topology harmonized with the
International Classification of Diseases for Oncology (ICD-O)
SNOMED CT (~2000) General clinical terminology
Lister Hill National Center for Biomedical Communications 4
Breast cancer in SNOMED CT http://browser.ihtsdotools.org/
Lister Hill National Center for Biomedical Communications 5
Breast cancer in SNOMED CT
Lister Hill National Center for Biomedical Communications 6
Main types of cancer-related entities
associated finding
No family history: breast carcinoma
“situation”
Carcinoma of breast
disorders
associated morphology
Malignant epithelial neoplasm – category
morphologic abnormality
Lister Hill National Center for Biomedical Communications 7
Types of cancer-related entities
Sarcoma lower inner quadrant of female breast
T3: Breast tumor >5 cm in greatest dimension
CAP Cancer Checklist; Breast: Excision Less Than…
Suspected breast cancer
BRCA1 mutation carrier detection test
Breast cancer type 1 susceptibility protein
Tumor-node-metastasis (TNM) breast tumor staging
Distance of tumor from closest surgical margin (breast)
Mental adjustment to cancer scale
Nottingham histologic grading system
Lister Hill National Center for Biomedical Communications 8