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Nuclear Magnetic Nuclear Magnetic Resonance (NMR) Resonance (NMR) for beginners for beginners
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Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Dec 16, 2015

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Page 1: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Nuclear Magnetic Nuclear Magnetic Resonance (NMR)Resonance (NMR)Nuclear Magnetic Nuclear Magnetic Resonance (NMR)Resonance (NMR)

for beginnersfor beginners

Page 2: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Overview• NMR is a sensitive, non-destructive

method for elucidating the structure of organic molecules

• Information can be gained from the hydrogens (proton NMR, the most common), carbons (13C NMR) or (rarely) other elements

Page 3: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin States• All nuclei have a spin state (I )• Hydrogen nuclei have a spin of I =

±½ (like electrons)• Spin number gives number of

ways a particle can be oriented in a magnetic field: 2I + 1

Page 4: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin States• In the absence of a magnetic field

the spin states are degenerate• The “spinning” nucleus generates

its own magnetic field

Page 5: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin States• In a magnetic field the states have

different energies

Bo

B’B’

Page 6: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin states in a magnetic field

• Energy difference linearly depends on field strength

= magnetic moment of H (2.7927N or +14.106067x10-27J/T)

Page 7: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin states in a magnetic field

• Even in a very large field (1-20T) the energy difference is small (~0.1cal/mol)

Page 8: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin states in a magnetic field

• A small excess of protons will be in the lower energy state

• These can be promoted to the higher state by zapping them with EM radiation of the proper wavelength

• Wavelength falls in the radio/TV band (frequency of 60-500MHz)

Page 9: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin states in a magnetic field

• Stronger magnetic field necessitates shorter wavelength (higher frequency)

• After low energy protons are promoted to the higher energy state they relax back to the lower state

Page 10: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Making NMR work• Not all protons absorb at the same

field values• Either magnetic field strength or

radio frequency must be varied • Frequency/field strength at which

the proton absorbs tells something about the proton’s surroundings

Page 11: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Making NMR work

Page 12: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Sample must be spun to average out magnetic field inhomogeneity

Page 13: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

NMR data collection• Continuous wave data collection

(CW): – Magnetic field value is varied– Intensity of emitted RF compared to

RF at detector– Absorption is plotted on graph

Page 14: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

NMR data collection

CW NMR of isopropanol

Page 15: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

NMR data collection• Pulsed Fourier transform data

collection:– Short bursts of RF energy are shot at

sample– Produces a decay pattern– FT done by computer produces

spectrum

Page 16: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Simple FT FID and spectrum

Page 17: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

More complex FT FID and spectrum

Page 18: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Even more complex FT FID

Page 19: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

FT NMR Spectrum

Page 20: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Pulsed FT NMR of isopropanol

Page 21: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical shift• Protons in different environments

absorb at different field strengths (for the same frequency)

• Different environment = different electron density around the H

Page 22: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical shift positions

High field, shielded

Low field, deshielded

Reference (tetramethylsilane)

PPM of applied field () from reference

Page 23: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical shift positions

Page 24: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

NMR reference• Tetramethylsilane ((CH3)4Si)

• Advantages:– Makes one peak– 12 equivalent H, so little is needed– Volatile, inert, soluble in organic solvents– Absorbs upfield of hydrogens in most

organic compounds

Page 25: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Shielding/deshielding• Electron density affects chemical

shift • Electrons generate a magnetic

field opposed to the applied field• H in high electron density absorbs

upfield (toward TMS, 0ppm) from H in low electron density

Page 26: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Shielding/deshielding• Effect of electronegativity:

electronegative atom nearby removes electron density and causes deshielding

• TMS protons are extremely shielded because Si is electropositive compared to C

Page 27: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Shielding/deshielding• Few protons absorb upfield of TMS• Alkyl groups are electron donating,

so alkanes absorb around 0-2ppm ()

• Hydrogens near electronegative atoms are deshielded

• Absorption is around 3-4

Page 28: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Anisotropy• “Anisotropy”: any characteristic

that varies with direction (asymmetric)

• Applied to the shielding/deshielding characteristics of electrons in some systems

Page 29: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Anisotropy• Aromatic hydrogens are in the

deshielding region of the magnetic field generated by circulating electrons

Page 30: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Typical chemical shifts

Page 31: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin-spin coupling• Magnetic field felt by a proton is

affected by the spin states of nearby protons – either shielding or deshielding

• Case 1: neighboring single protons• These H can either be the same or

opposite spins – equal probability• Makes doublets of two equal peaks at

both absorptions

Page 32: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

NMR spectrum of dichloroacetaldehyde

Page 33: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Coupling constants• Separation between peaks is the

“coupling constant” • Symbol: J• Measured in Hz• It is the same for both coupled

protons

Page 34: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin-spin coupling• Case 2: Single proton next to a pair• Single proton splits the pair into a

doublet• Spin state possibilities for pair:

Bo

Equal energy

Integration ratio: 1:2:1

Page 35: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin-spin coupling• Single proton is split into a triplet• Any group of n protons will split its

neighbors into n + 1 peaks• Intensity follows Pascal’s triangle

(Fibonacci series)

Page 36: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Spin coupling example• Chloroethane CH3CH2Cl

Page 37: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Protons on Heteroatoms

• Protons on N or O often give broad uncoupled peaks of uncertain chemical shift

• Protons on nitrogen are broad due to coupling with nitrogen nucleus (spin # = 1)

• Chemical shift can depend on concentration

• Peaks will be sharp and coupled if there is no acid or water present

Page 38: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Protons on heteroatoms

Proton on nitrogen: broad due to interaction with nitrogen (spin number = 1)

Split into doublet by NH – reciprocal splitting is not seen

Page 39: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Phenolic Protons and Concentration

Page 40: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Alcoholic protons and coupling

1H NMR spectrum of methanol at various temperatures

Page 41: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical Shift Differences and

Coupling• Equivalent protons do not split each

other• Adjacent protons (“vicinal”) exhibit

simple coupling if their chemical shifts are very different (/J >10)

• Designated an “AaXx” system (“AaMmXx” for three widely separated sets)

• Subscripts designate the number of protons involved

Page 42: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical Shift Differences and

Coupling

• Sets of protons close to each other are “AaBb” or “AaBbCc”

• The closer two sets are the more the peaks are distorted AX system becoming

an AB system

Page 43: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical Shift Differences and

Coupling

Page 44: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

AX system with some distortion

Page 45: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Ternary systems• AaMmXx systems exhibit simple

splitting with two coupling constants

Page 46: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Ternary Systems

Page 47: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Ternary systems

Page 48: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical and magnetic equivalence

Page 49: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical and magnetic equivalence

Page 50: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical and magnetic equivalence

NMR spectrum of butane

Page 51: Nuclear Magnetic Resonance (NMR) for beginners. Overview NMR is a sensitive, non-destructive method for elucidating the structure of organic molecules.

Chemical Shift Differences and

Coupling• AaBbXx systems are approximately

first order (simple splitting)

• AaBbCc systems are complex