NDeRC Annual Report—PI Section The Notre Dame extended Research Community (NDeRC) project (DGE-0638723) is completing its fourth year. Professor Mitchell R. Wayne is PI, and Dr. Rachel Fulcher-Dawson is the project external evaluator. This annual report covers the period from June 1, 2010 to May 31, 2011. A. Participants 1. Senior Personnel Senior Personnel Description of Position Time on Project Affiliation & Position Description of Contribution Mitchell Wayne PI 4 years Chair, Department of Physics, University of Notre Dame Coordinates Senior Personnel; Oversees relations with NSF; Coordinates with University Partners Thomas Loughran Managing Co- PI 4 years Professional Specialist, Dept of Physics, University of Notre Dame Project articulation, development of partnerships, communication strategies Daniel Karmgard Co-PI 4 years Research Professor, Dept of Physics, Univ of Notre Dame Advises particle physics outreach; technical support Douglas Thain Co-PI 4 years Assoc Prof., Dept of Computer Science and Engineering, Univ of Notre Dame Coordinates with College of Engineering Patrick Mooney Project Coordinator 4 years Professional Specialist, Dept of Physics, Univ of Notre Dame Responsible for day-to-day operation of the project, assisting with project articulation and reporting Rachel Fulcher- Dawson External Evaluator 9 months Independent Scholar External evaluation: some data gathering, gives formative input to PIs 2. Fellows Active NDeRC Fellows (2 nd year of Cohort II) year in prog ram major research topic statement of graduate location & nature of graduate work ethnicit y & gender Katherine Rueff 4th yr of PhD Physics Star formation and the interstellar medium in the thick disks of spiral galaxies College of Science & conducing research white & female Aranda 5th Chemist Biochemical analysis of the College of white &
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NDeRC Annual Report—PI Section
The Notre Dame extended Research Community (NDeRC) project (DGE-0638723) is completing its fourth year. Professor Mitchell R. Wayne is PI, and Dr. Rachel Fulcher-Dawson is the project external evaluator. This annual report covers the period from June 1, 2010 to May 31, 2011.
A. Participants1. Senior Personnel
Senior Personnel
Description of Position
Time on Project
Affiliation & Position Description of Contribution
Mitchell Wayne PI 4 years Chair, Department of Physics, University of Notre Dame
Coordinates Senior Personnel; Oversees relations with NSF; Coordinates with University Partners
Thomas Loughran
Managing Co-PI 4 years Professional Specialist, Dept of Physics, University of Notre Dame
Project articulation, development of partnerships, communication strategies
Daniel Karmgard
Co-PI 4 years Research Professor, Dept of Physics,Univ of Notre Dame
Advises particle physics outreach; technical support
Douglas Thain Co-PI 4 years Assoc Prof., Dept of Computer Science and Engineering, Univ of Notre Dame
Coordinates with College of Engineering
Patrick Mooney Project Coordinator
4 years Professional Specialist, Dept of Physics, Univ of Notre Dame
Responsible for day-to-day operation of the project, assisting with project articulation and reporting
Rachel Fulcher-Dawson
External Evaluator
9 months Independent Scholar External evaluation: some data gathering, gives formative input to PIs
2. Fellows
Active NDeRC Fellows (2nd
year of Cohort II)
year in program
major research topic statement of graduate location & nature of graduate work
ethnicity & gender
Katherine Rueff
4th yr of PhD
Physics Star formation and the interstellar medium in the thick disks of spiral galaxies
College of Science & conducing research
white & female
Aranda Slabbekoorn
5th year PhD
Chemistry & Biochem
Biochemical analysis of the Alzheimer protein Tau and its interaction with microtubules of different conformations and the investigation of Tau-Tau interactions at the microtubule surface.
College of Science & conducing research
white & female
Michelle Dolan
7th year PhD
Physics Computational modeling of stellar evolution College of Science & writing dissertation
white female
Michael Crocker
6th year PhD
Computer Science and Engineering
Circuits and architectures for emerging nanotechnology: nanomagnet logic
College of Engineering & completing dissertation
white & male
Carrie Rodak
5th yr of PhD
Civil Engineering and Geological Sciences
Probabilistic Risk analysis using system performance criteria for wellhead protection and the identification of human health risks
College of Engineering, conducting research and writing dissertation
white & female
Rebecca 4th Chemistry Scanning Tunneling Microscopy Study College of Science & white &
Quardokus yr of PhD
& Biochem
Comparing Neutral and Mixed-Valence Dinuclear Organometallic Molecules on Au(111)
conducting research female
Valerie Goss 5th yr of Ph.D.
Chemistry & Biochem
Potential Dependent DNA Origami Binding on Silicon Surfaces & In Situ Atomic Force Microscopy Liquid Imaging
College of Science & Preparing for Candidacy Exam
black & female
Active NDeRC Fellows (1st year of Cohort III)
Year in graduate program
major Research topic Statement of graduate location & nature of graduate work
Ethnicity & gender
Aprell Carr 6th yr of PhD (starting)
Cellular Biology
Role of the Stil gene in dopaminergic cells College of Science & conducting research
african-american/black female
Francis Raycroft
5th year of PhD
Biology Retinal Regeneration in Zebrafish College of Science & conducing research
white & male
Jamie Antonelli
6th yr of PhD
Physics Measuring the decay of the Z boson using the CMS detector at the LHC
College of Science & writing dissertation
white & male
Jessica Mikels
3rd yr of PhD (5th yr at ND)
Sociology Human/environmental interaction, cultural constructions of nature, place-based environmental education
College of Arts and Letters & Preparing for Candidacy Exams
white & female
Past NDeRC Fellows
Year in graduate program
Major Research topic Statement of graduate location & nature of graduate work
Ethnicity & gender
e-mail
Jill Dzurisin 6th yr of PhD Chemisty & Biochemistry
The study of cytoskeletal proteins that interact with microtubules and membranes
Saint Joseph High School Research Community student researcher in lab
biweekly STM/AFM investigation of alpha-bombarded surfaces
Rebecca Quardokus 1
Washington High School
UrbanPublic71-80%No
Honors Biology9
GENO Week Aprell Carr, Francis Raycroft, Aranda Slabbekoorn Susan Rathwick
3,1
Woodland Elementary School
UrbanPublic91-100%No
Science4
NANO Week Michael Crocker, Valerie Goss, Rebecca Quardokus Michael Wagner
3,1
BioEYES Weeks: Teacher/Fellow-initiated, Teacher-staffed, Fellow-assistedNote: while we follow the NSF-suggested guidelines for the table of primary Fellow-Teacher interactions, we modify that format for the unusual BioEYES case to highlight the number of students impacted (each impacted over a period of 5 classes in a single week) by the BioEYES activity, which was launched by Fellows but maintained largely by teachers.
IndianaSchool Name
SettingType% F/R lunchAdYrlyProgress?
Class Name, grade
Description of Activity(note: this activity was begun by Fellows but sustained by staff teacher
Genotyp Product development and testing in Summer Institute and classroom implementations of Genotyp’s Cloning a Fluorescent Gene module; Lesson prep materials
Genotyp: led teacher workshopNDeRC: troubleshoot CAFG module
Provided web site, photography support; co-sponsored annual Forum
$1500 Forum support
All 11 Fellows, nearly all teachers, Sr. Personnel Wayne, Mooney, Loughran
ND Graduate School
Inclusion of endowed Schmitt Fellows in MichianaSTEM blogging; Forum support
$2000 Forum Support
Same as above
ND College of Science
Communications support; Forum support
$2000 Forum Support
Same as above
B. Project Summary1. Goals and Activities
This 2010-11 year has been exceptionally busy in support of NDeRC’s project goals. These goals amount to including Fellows as leaders and interns in an integrated STEM community in Michiana. While most of the data in support of this activity is presented in tabular form in section A and in Section B2 below, textual summaries of our primary modes of activity are included under each of our project goals in this section B1.
Goal 1: To incorporate graduate students into the life and work of the Michiana STEM Community so as to awaken in them a sense of responsibility for education and public outreach and to provide them with an Integrated STEM Community model for effective exercise of that responsibility. (See https://docs.google.com/present/view?id=d98wjv3_693gn88jjhh)
Primary supporting activities:All-hands biweekly meetings of Fellows, Teachers, and Project Management (Mooney,
Loughran) occurred every other Tuesday from 3:30 to 5:30, with teachers joining as their schedules permitted, usually just for the second hour. Topics for discussion included: updates on research; progress in classroom visitations, both weekly and on the STEM-Week model; planning informal educational events; public communication about science; online activities (blogging and wikis.)
Collaboration-specific activities included Summer fellow-teacher-student laboratory experiences, the planning and implementation of Summer Institutes for K-12 teachers, and the STEM-Week model of week-long classroom activities.
Classroom visits varied by collaboration: in addition to the series of STEM-Week (NANO, ENVIRO, ASTRO, GENO, and BioEYES) visits documented in the table above, Fellows Rueff (with Teacher Fletcher), Dolan (one trimester with McNeeley), Crocker (with Malone), and Slabbekoorn (with Ballentine) worked together in classrooms once or twice-weekly, year-round.
Support of informal education activities (in libraries, community centers, planetariums, science fair competitions, etc.) was an ad hoc but reasonably frequent component of the NDeRC pattern of life. See section A4 for details.
Maintaining a vibrant web presence (blogs, wikis, other social media) was a regular part of NDeRC activity in support of all 3 NDeRC goals. See section B2 below for URLs and a map of the NDeRC blogosphere. This year saw an 11-month 39% increase in blog posting from last year, and 250% increase in subscriptions.
Goal 2: To bring the experience of belonging to the research community to a wider range of K-12 teachers and students in the surrounding area.
Primary Supporting ActivitiesCollaborating for Research and Education Forum IV (linked here) was held in January
2011; 100 teachers, 15 graduate fellows, and 15 university faculty/staff participated in the event. Presentations were made by half a dozen collaborating partners; U.S. Representative Joe Donnelly (D-Indiana 3rd) attended. 100 of the attendees at this forum accepted invitations and are now subscribed to the MichianaSTEM Community blog.
Summer Institutes (BioEYES, NANO, ENVIRO, ASTRO, GENO) were held during Summer 2010. A total of 93 teachers (25 BioEYES, 15 NANO, 24 Enviro, 23 ASTRO, 6 GENO) attended these week-long institutes. Stipends were provided at $100/teacher/day.
Note on Stipends: this year no stipends were provided neither for the Forum--whose attendance slipped from roughly 200 to roughly 100 teachers—nor for the upcoming Summer Institutes—also down, with 51 teachers currently registered. Some of this 50% decrease may be due to the lack of stipends, and due to saturation of the market, and some due to advertizing. Forum attendance is linked to Institute attendance, since the Forum is our primary vehicle for marketing the Institutes to teachers. We view it as encouraging that our attendance for both the Forum and the Institute held as well as it did, in the aftermath of eliminating stipends, which was done both for budgetary reasons and as a step toward a more sustainable model for these activities.
Figure 1: NANO Week introduction of Scanning Tunneling Microscopy (STM) at Swanson Primary Center. See their published presentations on their NANO and BioEYES weeks embedded and linked from this NDeRC blog post.
STEM-Weeks continued to be a success as a vehicle for extending an invitation into STEM community with teachers to their students. Like NDeRC’s adaptation of the BioEYES Institute, every STEM Institute devotes roughly a third of its time to each of the following categories: 1) the content of the STEM-Week classroom activity; 2) providing content knowledge as background to the activity; and 3) tours/presentations of university research related to the activity, led by NDeRC Fellows. Details of participation are present in the table found in Section A3 above. Participant numbers by STEM-Week type are summarized here: BioEYES: 62 K-12 teachers, 4020 students; NANO: 14 K-12 teachers, 1006 students; ENVIRO: 11 K-12 teachers, 977 students; (143 wells tested and mapped: http://erc.nd.edu/blogs/blog/2011/05/16/a-unique-data-set/); ASTRO: 4 K-12 teachers, 180 students; GENO: 4 K-12 teachers, 198 students.
TOTALS from STEM Weeks: 6636 students; 107 teachers, 70 schools, 259 different classes in the past year alone. All of these contacts are at least a week long in duration. Of these totals, 3251 students and 58 teachers experienced at least one week-long interaction with Fellows. These numbers are evidence for proof-of-concept success for a central NDeRC strategy: increasing the surface area of our
capacity to issue invitations to Michiana K-12 teachers and students into Integrated STEM Community.
Goal 3: To strengthen and expand avenues of collaboration between the University of Notre Dame and surrounding K-12 institutions.
This third goal has been clarified for us in light of the Integrated STEM Community model: it is not just Notre Dame’s relationships with surrounding K-12 institutions we seek to foster, but a broader network of University-K-12-Community ties; our supportive activities illustrate our pursuit of this broader goal.
Primary Supporting ActivitiesNDeRC’s ongoing collaboration with more than 70 K-12 schools has been
documented in detail in the tables above (section A3.)As is evident in part from our table of collaborating partners (table A4), NDeRC has
maintained a visible and catalytic presence with its community partners. The number and kind of these interactions is large and difficult to quantify. Below is a list of highlights:
NDeRC’s Collaborating for Research and Education Forum continued to bring together a wide arrange of university partners, including this year two parent groups (No Parent Left Behind and Home Management Services: see http://www.michianastem.org/family) who had never worked together until NDeRC called them together to plan for this Forum.
Carnegie Classification for Civic Engagement : NDeRC was a central player in the University of Notre Dame’s successful petition to achieve this classification.
Education Collaborative Council: PI Wayne and Co-PI Loughran participate monthly in the ECC. From their web site: “Comprised of 18-20 administrators, faculty, and staff from the University of Notre Dame, the South Bend Community School Corporation, Saint Mary’s College, Holy Cross College, Indiana University South Bend, and Ivy Tech Community College, the Education Collaborative Council is a mutually beneficial partnership whose purpose is to help guide strategic, long-term efforts to positively influence student performance and test scores, and to improve graduation rates in South Bend.” (http://publicaffairs.nd.edu/k-12-education/education-hub/.)
Chamber of Commerce Education event: NDeRC send a contingent of some dozen PIs, Fellows and Project Manager Mooney to participate in a community-wide breakfast discussion on the importance of education for community prosperity.
Nanotechnology Plunge: NDeRC joined the Midwest Institute for Nanotechology Devices (MIND), and the Memoral Hospital Foundation in their effort to provide a “Nano Plunge” to 100 business leaders from Michiana. Half a dozen NDeRC senior personnel and Fellows attended the event, showcasing our three mobile scanning probe microscopes in the foyer of the event. See http://science.nd.edu/research/profiles/nderc_nanotechnology.htm
Event broadcasting to 100 K-12 teacher blog subscribers: NDeRC’s MichianaSTEM Community blog is becoming a venue for announcements: four times this Spring announcements of events (two from Physics, one from Public Affairs and
Communication, one from the Northern Indiana Science, Mathematics and Engineering Collaboration) were make to K-12 educators
Visitations to ND from local schools or other student groups: This year NDeRC organized, co-hosted or otherwise supported a variety of one-day visits from a variety of local schools, always working with other university partners. See the table in section A4 of this report, and Table 2.1 of our evaluator’s appendix.
Activities added to partnering organization events: Other collaborative activities reached out to students neither in classrooms nor at the university, but in sites organized by co-sponsoring partners: Science Alive! at the Saint Joseph Public Library; Science Spooktakular at the ETHOS Center in Elkhart; at summer camps organized by NISMEC and the Michiana Astronomical Society; etc.
2. Communication
Presentations and Publications:Achievement Type Citation
Scientific product * Michael Crocker, X. Sharon Hu, and Michael Niemier, “Design and Comparison of NML Systolic Architectures” International Symposium on Nanoscale Architectures, pages 29-34, June 2010 Oral presentation given June 2010 in Anaheim, California, USA
*Carr A, *Raycroft F, *Slabbekoorn A; An Invitation to the 2010 GENO Summer Institute: A presentation to local K-12 STEM Teachers at the Collaborating for Education and Research Forum IV; January 2011; University of Notre Dame; Notre Dame, IN.
*Dolan M, +Fletcher C, +McNeeley A, *Rueff K; An Invitation to the 2010 ASTRO Summer Institute: A presentation to local K-12 STEM Teachers at the Collaborating for Education and Research Forum IV; January 2011; University of Notre Dame; Notre Dame, IN.
Scanning Tunneling Microscopy Study Comparing Neutral and Mixed-Valence Dinuclear Organometallic Molecules on Au(111). 84th Colloid and Surface Science Symposium. University of Akron, Akron, OH, USA.
Conference presentation/posterScientific product *Raycroft, F., Kassen, D., and Hyde, D. Role of Socs Proteins in the Light-
damaged Regenerating Zebrafish Retina. Poster Presentation at 9th International Zebrafish Meeting. June 2010. University of Wisconsin. Madison, Wisconsin.
Conference presentation/posterScientific product *Rodak, C. and Silliman, S. (2010) "Application of Probabilistic Risk Analysis
and Fault Trees to Wellhead Protection". American Geophysical Union Fall Meeting, San Francisco, CA. Dec 16, 2010.
+Brandt S, *Crocker M, *Goss V, *Quardokus R, +Rose L; An Invitation to the 2010 NANO Summer Institute: A presentation to local K-12 STEM Teachers at the Collaborating for Education and Research Forum IV; January 2011; University of Notre Dame; Notre Dame, IN.
+Gensic J, *Mikels J, *Rodak C, +Walsh M; An Invitation to the 2010 ENVIRO Summer Institute: A presentation to local K-12 STEM Teachers at the Collaborating for Education and Research Forum IV; January 2011; University of Notre Dame; Notre Dame, IN.
*Carr A, Peyer D, Peyer J, *Raycroft F, *Slabbekoorn A; GENOweek: Lesson Plans for K-12 Classrooms
Curriculums and lesson plansEducational product - Instructional product
*Dolan M, +Fletcher C, +McNeeley A, *Rueff K; ASTROweek: Lesson Plans for K-12 Classrooms
Curriculums and lesson plansEducational product - Instructional product
+Brandt S, *Crocker M, *Goss V, *Quardokus R, +Rose L; NANOweek: Lesson Plans for K-12 Classrooms
Curriculums and lesson plansEducational product - Instructional product
+Gensic J, *Mikels J, *Rodak C, +Walsh M; ENVIROweek: Lesson Plans for K-12 Classrooms
Curriculums and lesson plansEducational product - Instructional product
*Rueff, K., *Dolan, M., +Fletcher, C., +McNeeley A., +Modlin, S., +Havens, M., +Dove, C., +Chance, R.,: Digital Visualization Theater Presentation of A Journey Through the Solar System & the Universe.
Instructional materialsEducational product - Educational research
*Mikels-Carrasco, Jessica. 2010. Nature in our own backyards: Urban ecology and children. Children, Youth and Environments 20(2): 190-199.
Journals - RefereedScientific product *Rodak, C. and Silliman, S. (2011) “Probabilistic risk analysis and fault
trees: Initial discussion of application to identification of risk at a wellhead”. Advances in Water Resources xxx (2011) xxx-xxx. doi:10.1016/j.advwatres. 2011.02.005 Article in press.
Journals - RefereedScientific product Gupta, K., Joyce, M., *Slabbekoorn, A., Zhu, Z., Paulson, B., & Goodson, H.
(2010). Probing Interactions Between CLIP-170, EB1, and Microtubules. J Mol Biol 395(5) pp.1049-1062.
(2010) Charge Localization in Isolated Mixed-Valence Complexes: An STM and Theoretical Study. J. Am. Chem. Soc., 2010, 132, 13519-13525. doi:10.1021/ja105958p.
*Carr A, Peyer D, Peyer J, *Raycroft F, *Slabbekoorn A; 2010 GENO Summer Institute at the University of Notre Dame: Professional Development for K-12 STEM Teachers
*Dolan M, +Fletcher C, +McNeeley A, *Rueff K; 2010 ASTRO Summer Institute at the University of Notre Dame: Professional Development for K-12 STEM Teachers
Educational product - Instructional product
+Brandt S, *Crocker M, *Goss V, *Quardokus R, +Rose L ; 2010 NANO Summer Institute at the University of Notre Dame: Professional Development for K-12 STEM Teachers
+Gensic J, *Mikels J, *Rodak C, +Walsh M; 2010 ENVIRO Summer Institute at the University of Notre Dame: Professional Development for K-12 STEM Teachers
Website developed as result of GK-12 activities
Type Address PurposeWeb site erc.nd.edu a central site with background and
links to complementary social mediaWiki Web Home
michianastem.org a web of wikis where members can create free educational wikis
Collaboration michianastem.org/* (*=nano, Intentionally public workspaces for
Total this year (as of May 31, 2011) 389The NDeRC Blogosphere as of May 31, 2011
During this past year, 100 posts from these individual blogs were published in the MichianaSTEM Community Blog. This is NDeRC’s most general-audience blog, with 139 subscribers, about 100 of whom are K-12 teachers. Authors are invited and sometimes encouraged to cross-list postings from their individual or collaboration-specific blogs into this most common blog.
Individual NDeRC blog posts (n=668), 40% of which were also posted to the collaboration blogs.