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Molecular Evidence for Occurrence of Tomato leaf curl New Delhi virus in Ash Gourd (Benincasa hispida) Germplasm Showing a Severe Yellow Stunt Disease in India
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Dear Author,Here are the proofs of your article.
• You can submit your corrections online, via e-mail or by fax.• For online submission please insert your corrections in the online correction form. Always
indicate the line number to which the correction refers.• You can also insert your corrections in the proof PDF and email the annotated PDF.• For fax submission, please ensure that your corrections are clearly legible. Use a fine black
pen and write the correction in the margin, not too close to the edge of the page.• Remember to note the journal title, article number, and your name when sending your
response via e-mail or fax.• Check the metadata sheet to make sure that the header information, especially author names
and the corresponding affiliations are correctly shown.• Check the questions that may have arisen during copy editing and insert your answers/
corrections.• Check that the text is complete and that all figures, tables and their legends are included. Also
check the accuracy of special characters, equations, and electronic supplementary material ifapplicable. If necessary refer to the Edited manuscript.
• The publication of inaccurate data such as dosages and units can have serious consequences.Please take particular care that all such details are correct.
• Please do not make changes that involve only matters of style. We have generally introducedforms that follow the journal’s style.Substantial changes in content, e.g., new results, corrected values, title and authorship are notallowed without the approval of the responsible editor. In such a case, please contact theEditorial Office and return his/her consent together with the proof.
• If we do not receive your corrections within 48 hours, we will send you a reminder.• Your article will be published Online First approximately one week after receipt of your
corrected proofs. This is the official first publication citable with the DOI. Further changesare, therefore, not possible.
• The printed version will follow in a forthcoming issue.
Please noteAfter online publication, subscribers (personal/institutional) to this journal will have access to thecomplete article via the DOI using the URL: http://dx.doi.org/[DOI].If you would like to know when your article has been published online, take advantage of our freealert service. For registration and further information go to: http://www.springerlink.com.Due to the electronic nature of the procedure, the manuscript and the original figures will only bereturned to you on special request. When you return your corrections, please inform us if you wouldlike to have these documents returned.
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Please note: Images will appear in color online but will be printed in black and white.ArticleTitle Molecular Evidence for Occurrence of Tomato Leaf Curl New Delhi Virus in Ash Gourd (Benincasa
hispida) Germplasm Showing a Severe Yellow Stunt Disease in IndiaArticle Sub-Title
Article CopyRight Indian Virological Society(This will be the copyright line in the final PDF)
Journal Name Indian Journal of Virology
Corresponding Author Family Name RoyParticle
Given Name AnirbanSuffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name PanwarParticle
Given Name G.Suffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name BagParticle
Given Name Manas KumarSuffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name PrasadParticle
Given Name T. V.
Suffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name KumarParticle
Given Name GunjeetSuffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name GangopadhyayParticle
Given Name K. K.Suffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Author Family Name DuttaParticle
Given Name M.Suffix
Division Germplasm Evaluation Division
Organization National Bureau of Plant Genetic Resources
Address 110012, New Delhi, India
Email
Schedule
Received 23 August 2012
Revised
Accepted 10 September 2012
Abstract An evaluation of 70 accessions of ash gourd germplasm grown at National Bureau of Plant Genetic Resources,New Delhi, India during Kharif season (2010) showed natural occurrence of a yellow stunt disease in threeaccessions (IC554690, IC036330 and Pusa Ujjwal). A set of begomovirus specific primers used in PCR gaveexpected amplicon from all the symptomatic plants; however no betasatellite was detected. Complete genomeof the begomovirus (DNA-A and DNA-B), amplified through rolling circle amplification, was cloned andsequenced. The begomovirus under study shared high sequence identities to different isolates of Tomato leafcurl New Delhi virus (ToLCNDV) and clustered with them. Among those isolates, the DNA-A and DNA-Bof the present begomovirus isolate showed highest 99.6 and 96.8 % sequence identities, respectively with anisolate reported on pumpkin from India (DNA-A: AM286433, DNA-B: AM286435). Based on the sequenceanalysis, the begomovirus obtained from ash gourd was considered as an isolate of ToLCNDV. Thus, thepresent findings constitute the first report of occurrence of a new yellow stunt disease in ash gourd from Indiaand demonstrated the association of ToLCNDV with the symptomatic samples. Occurrence of ToLCNDVin ash gourd germplasm not only adds up a new cucurbitaceous host of this virus but also raises the concernabout the perpetuation of this virus in absence of its main host tomato and thus has an epidemiologicalrelevance for understanding the rapid spread of this virus in tomato and other hosts in Indian sub-continent.
Keywords (separated by '-') Benincasa hispida - Begomovirus - Tomato leaf curl New Delhi virus - Rolling circle amplification
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Journal: 13337
Article: 115
UNCORRECTEDPROOF
SHORT COMMUNICATION1
2 Molecular Evidence for Occurrence of Tomato Leaf Curl New
3 Delhi Virus in Ash Gourd (Benincasa hispida) Germplasm
4 Showing a Severe Yellow Stunt Disease in India
5 Anirban Roy • P. Spoorthi • G. Panwar •
6 Manas Kumar Bag • T. V. Prasad • Gunjeet Kumar •
7 K. K. Gangopadhyay • M. Dutta
8 Received: 23 August 2012 / Accepted: 10 September 20129 � Indian Virological Society 2012
10 Abstract An evaluation of 70 accessions of ash gourd
11 germplasm grown at National Bureau of Plant Genetic
12 Resources, New Delhi, India during Kharif season (2010)
13 showed natural occurrence of a yellow stunt disease in three
14 accessions (IC554690, IC036330 and Pusa Ujjwal). A set of
15 begomovirus specific primers used in PCR gave expected
16 amplicon from all the symptomatic plants; however no
17 betasatellite was detected. Complete genome of the be-
18 gomovirus (DNA-A and DNA-B), amplified through rolling
19 circle amplification, was cloned and sequenced. The be-
20 gomovirus under study shared high sequence identities to
21 different isolates of Tomato leaf curl New Delhi virus
22 (ToLCNDV) and clustered with them. Among those iso-
23 lates, the DNA-A and DNA-B of the present begomovirus
24 isolate showed highest 99.6 and 96.8 % sequence identities,
25 respectively with an isolate reported on pumpkin from India
26 (DNA-A: AM286433, DNA-B: AM286435). Based on the
27 sequence analysis, the begomovirus obtained from ash gourd
28 was considered as an isolate of ToLCNDV. Thus, the
29 present findings constitute the first report of occurrence of a
30 new yellow stunt disease in ash gourd from India and
31 demonstrated the association of ToLCNDV with the symp-
32 tomatic samples. Occurrence of ToLCNDV in ash gourd
33 germplasm not only adds up a new cucurbitaceous host of
34 this virus but also raises the concern about the perpetuation
35 of this virus in absence of its main host tomato and thus has
36 an epidemiological relevance for understanding the rapid
37spread of this virus in tomato and other hosts in Indian sub-
karnataka virus. The maximum parsimonious tree was constructed
using MEGA 4.0 software. Percent bootstrap values are indicated in
the node
Molecular Evidence for Occurrence of Tomato Leaf Curl New Delhi Virus
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196 In the present study, we report the occurrence of a
197 severe yellow stunt disease in ash gourd germplasm from
198 India and documented complete sequence of an isolate of
199 ToLCNDV associated with such disease of ash gourd for
200 the first time. The use of such susceptible germplasm
201 accessions in breeding programme is a serious matter of
202 concern as it may lead to introduction of susceptible genes
203 into cultivated varieties and such event has already been
204 reported in many other crops [22]. Occurrence of ToL-
205 CNDV in cucurbitaceous crops was not recorded before
206 1980s. Presently ToLCNDV is a serious concern for most
207 of the cucurbitaceous vegetable crops. These crops are
208 mainly grown during Kharif season and their harvesting
209 time often coincides with the sowing time of tomato in
210 northern India. Thus on the epidemiological point of view
211 the natural occurrence of ToLCNDV in newer cucurbita-
212 ceous host strongly supports its perpetuation in absence of
213 main host and its subsequent spread to tomato.
214 Acknowledgments The authors wish to thank Director, National215 Bureau of Plant Genetic Resources, New Delhi, India for providing216 necessary facilities to carry out the study.
217 References
218 1. Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG. Uni-219 versal primers for the PCR-mediated amplification of DNA b220 molecule associated with some monopartite begomoviruses. Mol221 Biotechnol. 2002;20:315–8.222 2. Chowda Reddy RV, Colvin J, Muniyappa V, Seal S. Diversity223 and distribution of begomoviruses infecting tomato in India. Arch224 Virol. 2005;150:845–67.225 3. Haider MS, Tahir M, Latif S, Briddon RW. First report of Tomato226 leaf curl New Delhi virus infecting Eclipta prostrata in Pakistan.227 Plant Pathol. 2006;55(2):285.228 4. Hall TA. BioEdit: a user-friendly biological sequence alignment229 editor and analysis program for windows 95/98/NT. Nucleic230 Acids Symp Ser. 1999;41:95–8.231 5. Hussain M, Mansoor S, Iram S, Zafar Y, Briddon RW. First232 report of Tomato leaf curl New Delhi virus affecting chilli pepper233 in Pakistan. Plant Pathol. 2004;53:794–5.234 6. Ito T, Sharma P, Kittipakorn K, Ikegami M. Complete nucleotide235 sequence of a new isolate of Tomato leaf curl New Delhi virus236 infecting cucumber, bottle gourd and muskmelon in Thailand.237 Arch Virol. 2008;153:611–3.238 7. Mandal B, Mandal S, Sohrab SS, Pun KB, Varma A. A new239 yellow mosaic disease of chayote in India. Plant Pathol.240 2004;53:797.241 8. Mandal B. Emerging geminiviral diseases and their management.242 In: Sharma P, Gaur Rajarshi K, Ikegami M, editors. Emergence of
243begomovirus diseases in cucurbits in India. New York: Nova244Science Publishers Inc; 2010. p. 167–81.2459. Muniyappa V, Maruthi MN, Babitha CR, Colvin J, Briddon RW,246Rangaswamy KT. Characterization of Pumpkin yellow vein247mosaic virus from India. Ann Appl Biol. 2003;142:323–31.24810. Padidam M, Beachy RN, Fauquet CM. Tomato leaf curl ge-249minivirus from India has a bipartite genome and coat protein is250not essential for infectivity. J Gen Virol. 1995;76(Pt 1):25–35.25111. Pratap D, Kashikar AR, Mukherjee SK. Molecular characteriza-252tion and infectivity of a Tomato leaf curl New Delhi virus variant253associated with newly emerging yellow mosaic disease of egg-254plant in India. Virol J. 2011;8:305.25512. Raj SK, Snehi SK, Khan MS, Singh R, Khan AA. Molecular256evidence for association of Tomato leaf curl New Delhi virus257with leaf curl disease of papaya (Carica papaya L.) in India.258Australas Plant Dis Notes. 2008;3:152–5.25913. Samretwanich K, Chiemsombat P, Kittipakorn K, Ikegami M.260Yellow leaf disease of cantaloupe and wax gourd from Thailand261caused by Tomato leaf curl virus. Plant Dis. 2000;84:200.26214. Sawangjit S. The complete nucleotide sequence of Squash leaf263curl China virus-[wax gourd] and its phylogenetic relationship to264other geminiviruses. Sci Asia. 2009;35:131–6.26515. Singh MK, Haq QMR Singh K, Mandal B, Varma A. Molecular266characterization of Tobacco leaf curl Pusa virus, a new mono-267partite begomovirus associated with Tobacco leaf curl disease in268India. Virus Genes. 2011;43:296–306.26916. Sohrab SS, Mandal B, Ali A, Varma A. Chlorotic curly stunt: a270severe begomovirus disease of bottle gourd in Northern India.271Indian J Virol. 2010;21:56–63.27217. Sohrab SS, Mandal B, Ali A, Varma A. Molecular diagnosis of273emerging begomovirus diseases in cucurbits occurring in north-274ern India. Indian J Virol. 2006;17:88–95.27518. Tahir M, Haider MS. First report of Tomato leaf curl New Delhi276virus infecting bitter gourd in Pakistan. Plant Pathol. 2005;54:277807–8.27819. Tamura K, Dudley J, Nei M, Kumar S. MEGA4: molecular279evolutionary genetics analysis (MEGA) software version 4.0.280Mol Biol Evol. 2007;24:1596–9.28120. Tiwari AK, Sharma PK, Khan MS, Snehi SK, Raj SK, Rao GP.282Molecular detection and identification of tomato leaf curl New283Delhi virus isolate causing yellow mosaic disease in bitter gourd284(Momordica charantia), a medicinally important plant in India.285Med Plants. 2010;2:117–23.28621. Usharani KS, Surendranath B, Paul-Khurana SM, Garg ID,287Malathi VG. Potato leaf curl-a new disease of potato in northern288India caused by a strain of Tomato leaf curl New Delhi virus.289Plant Pathol. 2004;53:235–6.29022. Varma A, Mandal B, Singh MK. Global emergence and spread of291whitefly (Bemisia tabaci) transmitted geminiviruses. In:292Thompson WMO, editor. The whitefly, Bemisia tabaci (homop-293tera: aleyrodidae) interaction with geminivirus-infected host294plants. 1st ed. India: Springer link; 2011. p. 205–92.29523. Venkataravanappa V, Lakshminarayana RCN, Salil J, Krishna296RM. Molecular characterization of distinct bipartite begomovirus297infecting bhendi (Abelmoschus esculentus L.) in India. Virus298Genes. 2012;44(3):522–35.
299
A. Roy et al.
123Journal : Large 13337 Dispatch : 15-9-2012 Pages : 4