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laying out the principles of open science (an abbreviated version) kaitlin thaney program manager, science commons open science@PSB 5 january 2009 This presentation is licensed under the CreativeCommons-Attribution-3.0 license.
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Laying out the Principles of Open Science

Jan 15, 2015

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Technology

Kaitlin Thaney

for Open Science @ Pacific Symposium on Biocomputing, 5 January 2009, Hawaii.
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Page 1: Laying out the Principles of Open Science

laying out the principles of open science

(an abbreviated version)

kaitlin thaney program manager, science commons

open science@PSB5 january 2009

This presentation is licensed under the CreativeCommons-Attribution-3.0 license.

Page 2: Laying out the Principles of Open Science

most of the useful knowledge is inaccessible.

most of the useful knowledge is in the wrong technology.

we don’t have enough people working on it.

Page 3: Laying out the Principles of Open Science

science commonsprinciples of open science

barcelona, spain july 2008

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open access to literature from funded research

(1)

Page 5: Laying out the Principles of Open Science

it all starts with the scholarly digital content: journals and databases

Page 6: Laying out the Principles of Open Science

transition from “paper metaphor”

Page 7: Laying out the Principles of Open Science

thinking of “papers” as containers of knowledge

Page 8: Laying out the Principles of Open Science

IGFBP-5 plays a role in the regulation of cellular senescence via a p53-dependent pathway and in aging-associated vascular diseases

“papers”

Page 9: Laying out the Principles of Open Science

IGFBP-5 plays a role in the regulation of cellular senescence via a p53-dependent pathway and in aging-associated vascular diseases

“networked knowledge”

Page 10: Laying out the Principles of Open Science
Page 11: Laying out the Principles of Open Science

“ By open access to the literature, we mean its free availability on the public internet, permitting users to

read, download, copy, distribute. print, search, or link to the full texts of the articles, crawl them for indexing, pass them as data to software, or use them for any

other lawful purpose, without financial, legal or technical barriers other than those inseparable from

gaining access to the internet itself.”

Image from the Public Library of Science, licensed to the public, under CC-BY-3.0

Page 12: Laying out the Principles of Open Science

“The only constraint on reproduction and distribution, and the only role for copyright in this domain, should be to give authors control over the integrity of their work and the right to properly acknowledged and

cited.”

Page 13: Laying out the Principles of Open Science

legal implementation

Page 14: Laying out the Principles of Open Science

access to research tools from funded research

(2)

Page 15: Laying out the Principles of Open Science

examples:lab mice, cell lines, DNA

... the physical materials

Page 16: Laying out the Principles of Open Science

research materials represent an incredible investment in tacit

knowledge

Page 17: Laying out the Principles of Open Science

the web revolutionized search, commerce, collaboration

Page 18: Laying out the Principles of Open Science

office supplies for science

Page 19: Laying out the Principles of Open Science

there are no office superstores

for science

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no internet marketplacesfor science

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everyone has to pre-authorize

through institutions

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the commons allows for “some rights reserved”

options to share

Page 23: Laying out the Principles of Open Science

solves the access problem via contract

(standardized material transfer agreements, or

MTAs)

Page 24: Laying out the Principles of Open Science

put data from funded research in the public domain

(3)

Page 25: Laying out the Principles of Open Science

citation, attribution via norms

ensures ability to freely distribute, copy, reformat, and integrate data from research into

new research ... without legal barriers

Page 26: Laying out the Principles of Open Science

creates legal zones of certainty

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a protocol, not a license

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invest in open cyberinfrastructure

(4)

Page 29: Laying out the Principles of Open Science

data without structure and annotation is a lost opportunity.

data should flow in an open, public, and extensible infrastructure

support recombination and reconfiguration into computer models, queryable by search

engine

treated as public good

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this is only the beginning of the conversation

Page 32: Laying out the Principles of Open Science

thank youwe’d love to hear from you

[email protected]

http://sciencecommons.org