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Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic
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Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Jan 28, 2016

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Page 1: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Ladislav NedbalDepartment of Biological Dynamics

Institute of Systems Biology & Ecology CASZámek 136, 37333 Nové Hrady, Czech Republic

Page 2: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Solar biofuels from microorganisms, why not yet?

0 < (EFUEL –EM) / m2.year = (EEsolar - EM) / m2.yearEM… construction, maintenance, fertilizers, pumping, harvesting,

processing, refining, distribution…)

EM … biological and technological constraint (≈ € !!!)

Esolar … geographical constraint

CROP Corn Soybean Canola Jatropha Coconut Oil palm Microalgae Microalgae

OIL YIELD (l/ha)

172 446 1190 1892 2689 5950 136900 58700

70% and 30% oil in wet biomass (adapted from Y.Chisti (2007) Biotechnology Advances 25: 294-306)

Region SW USA NE USA UK

Lipid content 0.5 0.33 0.5 0.33 0.5 0.33

Biodiesel, gal/m2/year

1.24 0.82 1.06 0.71 0.77 0.52

With yields ≈ 1-2 gal(oil) / m2 / year and oil price < $3 / gal: the capital cost depreciation < several $ / year

Page 3: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Solar biofuels from microorganisms … continued …0 < (EFUEL –EM) / m2.year = (EEsolar - EM) / m2.year

EM… construction, maintenance, fertilizers, pumping, harvesting, processing, refining, distribution…)

EM … biological and technological constraint (≈ € !!!)Esolar … geographical constraint

E … thermodynamic, biological a technological constraint

Irradiance

Used

LostSolutions:- Decrease the antenna- Dilute the light technologically in space

- Dilute the light technologically in time

Page 4: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

High density algal cultures

Page 5: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Cell light dynamics in dense algal cultures

Page 6: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Light dynamics in dense algal cultures

A.A.

B.B.

C.C.

Page 7: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Constant mean irradiance, variable period & L:D ratio

BB

Chlorella vulgaris500 E.m-2.s-1

Page 8: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Constant incident irradiance, variable period & L:D ratio

AA

Chlorella vulgarisI0=2000 E.m-2.s-1

1ms

continuous

100ms

1s

Page 9: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Constant incident irradiance, variable L:D ratio

AA

Chlorella vulgaris10 ms period

2400 E.m-2.s-1

1200

700

250

130

Page 10: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Constant incident irradiance, constant L:D, variable period

Chlorella vulgarisL:D=1:1, I0=2000 E.m-2.s-1

2400 E.m-2.s-1

1200

700

250

130

T

Page 11: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Rate of photoinhibition

L:D=1:1, I0=2000 E.m-2.s-1

T= 10ms

Cont. I0=1000 E.m-2.s-1

Page 12: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Electron transfer

Page 13: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Conclusions for flashing light effect in the ms-range:

1) per area yield increase in dense cultures & high irradiance

2) reduction of photoinhibition rates

Page 14: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.
Page 15: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Harmonic light forcing with periods > 1 s

harmonic light input

non-linear output

2 amplitudeT

offset

Page 16: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Simulation tool

Nedbal et al.(2008) Biotechnology & Bioengineering 100: 902-910.

Page 17: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear fluorescence responseContinuous light Oscillating light

Nedbal et al. (2003) Biochim.Biophys.Acta: Bioenergetics 1607: 5-17Nedbal, et al. (2005) Photosynth.Res. 84: 99–106

Page 18: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear response in dynamic light

Page 19: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear response caused by regulation

Page 20: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear response caused by regulation

Page 21: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear response caused by regulation

Page 22: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Non-linear response in growth C

onst

ant l

ight

T=10

s

T=10

0s

Con

stan

t lig

ht

Page 23: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.
Page 24: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Metabolic rhythms of the cyanobacterium Cyanothece sp. ATCC 51142 correlate with modeled dynamics of circadian clock.

Page 25: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Different L/D ratio.

Page 26: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Different L/D ratio.

Page 27: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Model prediction for circadian Kai clock confronted with metabolic dynamics in 12L: 12D

Page 28: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Model prediction for circadian Kai clock in 6L: 6D

Page 29: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Model prediction in 6L: 6D qualitatively confirmedby experiment

Page 30: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Modeling Tools

Page 31: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Models are able to simulate the non-linearity … poorly

Page 32: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Comprehensive modeling space, SBML, MIRIAM

Page 33: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

…. soon to be continued

Page 34: Ladislav Nedbal Department of Biological Dynamics Institute of Systems Biology & Ecology CAS Zámek 136, 37333 Nové Hrady, Czech Republic.

Thank you for your attention!

Collaborators:

Photon Systems Instruments, Brno, CZ

Jan Červený, Ondra Komárek, Víťa Březina from

Nové Hrady, CZ

Fusheng Xiong, Vláďa Tichý from Třeboň, CZ

Johann Grobbelaar, UOFS Bloemfontain, S.Africa

Himadri Pakrasi, WUSTL, St.Louis, USA

Govindjee, UIUC, Urbana, USA

Agu Laisk, Tartu, Estonia

Conrad Mullineaux, London, UK