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Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University [email protected] elhaij 804-828-0794.

Dec 25, 2015

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Page 1: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 2: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Jeff ElhaiCenter for the Study of Biological Complexity

Virginia Commonwealth University

[email protected]://www.people.vcu.edu/~elhaij

804-828-0794

Page 3: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Page 4: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

The basic principle, as simply as possible

Page 5: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

1866 – Pierre Lallement invents the Velocipede

A historical perspective

Page 6: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Angular momentumL = m v r

Key facts

Page 7: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Importance of acting like a cyclist

Page 8: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101The seven steps of the bicycle method

1. Determine the direction you wish to go

2. Determine whether there is a paved surface

3. Point the bicycle in the proper direction

4. Pedal furiously

5. Determine how far you have moved

6. Determine what change in direction is required

7. Call a cab

Easily learned steps of the method

Page 9: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Page 10: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

???

Page 11: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Page 12: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101

Page 13: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Bicycle 101Science 101

Page 14: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101

Page 15: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101

Page 16: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

The Lives of the Scientist

Page 17: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

The Lives of the Scientist

Page 18: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101Our role

Page 19: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101Our role

Page 20: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101Our role

Page 21: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101Our role

Science is the belief in the ignorance

of experts.

- Richard Feynman

A process,...not a body

of facts

Page 22: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Science 101Our role

Science is the belief in the ignorance

of experts.

- Richard Feynman

A process,...not a body

of facts

Once you learn it…

it's yours for life

Page 23: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 24: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 25: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 26: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 27: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 28: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Importance of visualization in science

Page 29: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Importance of visualization in science

Page 30: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

Page 31: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

Page 32: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 33: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

High Energy State

Low Energy State

Page 34: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

High Energy State

Visualizing Energy

(cheap refrigerator

magnet)

Low Energy State

Page 35: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

High Energy State

Visualizing Energy

(cheap refrigerator

magnet)

Low Energy State

Page 36: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

High Energy State

Low Energy State

Page 37: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

High Energy State

Low Energy State

Page 38: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

High Energy State

Visualizing Energy

Low Energy State

Page 39: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

High Energy State

Visualizing Energy

Low Energy State

Page 40: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

Page 41: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

High Energy State

Low Energy State

Page 42: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Energy

High Energy State

Low Energy State

What are the components?

…for other forms of energy?

Page 43: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical EnergyLife: The play of water

Water: The play of oxygen

HH

O

H2O

Eight electrons

Page 44: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical EnergyLife: The play of water

Water: The play of oxygen

HH

O

H2O

-++

Low Energy State

Eight electrons

Page 45: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical Energy

HH

O

H2O

-++

Low Energy State

O2

H2 H2

High Energy State

Page 46: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical Energy

HH

O

H2O

-++

Low Energy State

O2

H2 H2

High Energy State

Page 47: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical Energy

HH

O

H2O

-++

Low Energy State

O2

High Energy State

Page 48: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Chemical Energy

HH

O

H2O

-++

Low Energy State

O2

High Energy State

H2 H2

Page 49: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

Page 50: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

Low Energy State

How can light be put to work?*

Page 51: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

How can light be put to work?*

Page 52: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

Page 53: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

http://www.bsharp.org/physics/swings

Visualizing PhotosynthesisSympathetic vibration - resonance

Page 54: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

http://www.bsharp.org/physics/swings

Visualizing PhotosynthesisSympathetic vibration - resonance

0 0 0

Page 55: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.
Page 56: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Distance from you

Force on swing

Push at same frequency

Transfer of energy through resonance...if frequencies match

Time

Page 57: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Distance from you

Force on swing

Force on swing

Force on swing

Push at same frequency

Push at twice frequency

Push at half frequency

Page 58: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Press silentlyBang then let go

Transfer of energy through resonance...if frequencies match

Page 59: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Page 60: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Infrared(low frequency,

low energy)

(high frequency,

high energy)

Ultraviolet

Transfer of energy through resonance...if frequencies match

Page 61: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Transfer of energy through resonance...if frequencies match

Which color light will be absorbed (put to use)?

Chlorophyll

Page 62: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing PhotosynthesisSympathetic vibration - resonance

Transfer of energy through resonance...if frequencies match

Which color light will be absorbed (put to use)?

Carotenoids

Page 63: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Low Energy State

Visualizing Photosynthesis

Page 64: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State

Page 65: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State

Page 66: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State CO2

Glucose

Fate of glucose?

Page 67: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State Fate of chlorophyll?

HH

O

H2O

-++

Not as Low Energy State

Page 68: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State Fate of chlorophyll?

HH

O

H2O

-++

Not as Low Energy State

O2

Page 69: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

High Energy State

Low Energy State

How to test this?

HH

O

H2O

-++

Not as Low Energy State

O2

Glucose

Page 70: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Photosynthesis

Page 71: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Human Photosynthesis

Page 72: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Visualizing Science in the Classroom

Page 73: Jeff Elhai Center for the Study of Biological Complexity Virginia Commonwealth University ElhaiJ@VCU.Edu elhaij 804-828-0794.

Jeff ElhaiCenter for the Study of Biological Complexity

Virginia Commonwealth University

[email protected]://www.people.vcu.edu/~elhaij

804-828-0794