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intro constitutional isomers: conformational isomers: stereoisomers: e – many slides from Soderberg text)
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Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

Dec 21, 2015

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Page 1: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

intro

constitutional isomers:

conformational isomers:stereoisomers:

(note – many slides from Soderberg text)

Page 2: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

Stereoisomers

Page 3: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

stereoisomers: different arrangement of atoms in space

enantiomers: mirror images

diastereomers: not mirror images (eg. cis/trans alkene)

chiral: not superimposible on mirror image, no plane of symmetry

asymmetric center: tetrahedral atoms with 4 different subs

stereocenter: exchange two bonds, get different stereoisomer (eg. alkene)

Definitions

Page 4: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

enantiomers: mirror images

not superimposable

Page 5: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

two enantiomers of thalidomide

thalidomide is chiral

Page 6: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

more examples of enantiomers

all are chiralif it has an asymmetric center, it is almost certainly chiral (exception – meso)

Page 7: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

achiral molecules (no stereocenters!)

wedges don’t necessarily mean a stereocenter, and vice-versa!

Page 8: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

other atoms can be stereocenters

Don’t worry about threo / erythro definition

Page 9: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.3

Page 10: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

stereocenters? asymmetric centers? chiral?

Page 11: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.4

The Cahn-Ingold-Prelog system

Page 12: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.4

Page 13: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.4

Page 14: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.4

(effective stereoisomer)

what if H is drawn pointing back?

Page 15: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.5

commercial thalidomide sold as racemic mixture

Page 16: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.5

proteins recognize stereochemistry!

Page 17: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

other examples of enantiomers with different biological activity

but . . . enantiomers have identical physical properties! (except optical rotation, next)

Page 18: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.6

determining stereochemistry: optical activity

l in dmc in g/mL

Page 19: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

enantiomers have equal but opposite specific rotations

racemic mixtures: optically inactive

Page 20: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

enantiomeric excess

eg. if you have 75% R and 25% S, ee = 50%

Page 21: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 22: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.7A

molecules with more than one stereocenter

(mirror images)

Page 23: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.7Anotice: diastereomers are not mirror images

Page 24: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

diastereomers have different physical propertiesdifferent optical rotationat least one, but not all asymmetric centers different

enantiomers: all asymmetric centers different

Page 25: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

2n stereoisomers

n = # asymmetric centers + # asymmetric alkene groups

OH

OH

eg. n = 38 total stereoisomers(including this one)

R,R,E

cis/trans alkenes are diastereomers – but not source of chirality! (show model)

what is the enantiomer of this molecule?

Page 26: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.7A

Page 27: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

Naming chiral compounds

Page 28: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.7B

meso compounds

rings – look for mirror plane!

Page 29: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.8

Fischer and Haworth projections

(looking down from above)

Page 30: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.8

ways of drawing open chain form of glucose:

Page 31: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.8

determining R/S on Fischers

convenient to compare sugars:

Page 32: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.8

Haworth projections(used for sugars in cyclic form)(not in Bruice)

Page 33: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

Determining the absolute configuration of (-)-glyceraldehyde

(+)-tartaric acid – configuration determined by x-ray crystallography

bonds to asymmetric center not broken – (-) GA must be S!

Page 34: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

stereochemistry and organic reactions

(don’t worry about stereospecific vs. stereoselective)

Page 35: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 36: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

racemic mix of enantiomers

Page 37: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 38: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

2 new centers formed – 4 isomers formed

Page 39: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 40: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 41: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 42: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 43: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 44: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 45: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 46: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 47: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 48: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

anti addition

Page 49: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 50: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)
Page 51: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

water adds with stereospecificity(enzyme reactions are stereospecific)

enzymatic reactions are stereospecific

Page 52: Intro constitutional isomers: conformational isomers: stereoisomers : (note – many slides from Soderberg text)

3.9

substrate stereoselectivity: