1 Araport: Bio-Analytic Resource Case Study Nicholas Provart, Department of Cell and Systems Biology & Centre for the Analysis of Genome Evolution and Function, University of Toronto, Canada The Bio-Analytic Resource for Plant Biology • BAR.utoronto.ca allows easy exploration of large biological data sets for hypothesis generation: • 128,000 Single Nucleotide Polymorphisms • 150 million gene expression measurements (75 million from A.th.) • Documented subcellular localizations for 9.3k proteins, predicted localization for most of Arabidopsis proteome, from SUBA • 70,944 predicted protein-protein interactions plus 36,306 documented PPIs • 67,275 predicted protein tertiary structures and 700+ experimentally- determined structures • Suite of easy-to-use tools for exploring these data • Papers describing BAR tools have been cited ~2298 times • Linked to and from by NCBI, TAIR, FLAGdb++, SIGnAL etc. BAR
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Araport: Bio-Analytic Resource Case Study
Nicholas Provart, Department of Cell and Systems
Biology & Centre for the Analysis of Genome
Evolution and Function, University of Toronto,
Canada
The Bio-Analytic Resource for Plant Biology
• BAR.utoronto.ca allows easy exploration of large biological data sets for hypothesis generation:
• 128,000 Single Nucleotide Polymorphisms
• 150 million gene expression measurements (75 million from A.th.)
• Documented subcellular localizations for 9.3k proteins, predicted localization for most of Arabidopsis proteome, from SUBA
• 70,944 predicted protein-protein interactions plus 36,306 documented PPIs
• 67,275 predicted protein tertiary structures and 700+ experimentally-determined structures
• Suite of easy-to-use tools for exploring these data
• Papers describing BAR tools have been cited ~2298 times
• Linked to and from by NCBI, TAIR, FLAGdb++, SIGnAL etc.
BAR
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Araport – Modules
International Arabidopsis Informatics Consortium (2012). The Plant Cell. 24(6): 2248-2256.
Zoomable
User Interface
Protein
Tertiary
Structure
Expressolog /
Synteny
Viewer
Arabidopsis eFP Browser
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BAR
eFP image
webservice
eFP Browser: Webservices
AraportThe Arabidopsis Information Portal
eFP Views in Araport
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Arabidopsis Interactions Viewer 2.0: Preparing for Araport