Human Genetics and CV Risk Assessment Nathan Stitziel, MD, PhD Assistant Professor of Medicine and Genetics Director, Center for Cardiovascular Genetics Assistant Director, McDonnell Genome Institute National Lipid Association Scientific Sessions May 19, 2016
41
Embed
Human Genetics and CV Risk AssessmentCV Risk Assessment Nathan Stitziel, MD, PhD Assistant Professor of Medicine and Genetics ... Kiran Musunuru1,2, Eric E Schadt8, Lee Kaplan9, Derrick
This document is posted to help you gain knowledge. Please leave a comment to let me know what you think about it! Share it to your friends and learn new things together.
Transcript
Human Genetics and CV Risk Assessment
Nathan Stitziel, MD, PhD
Assistant Professor of Medicine and Genetics
Director, Center for Cardiovascular Genetics
Assistant Director, McDonnell Genome Institute
National Lipid Association Scientific Sessions
May 19, 2016
Disclosures
1. Grant support: AstraZenica
2. Consultant: Aegerion Pharmaceuticals
Genetic risk of CAD
Mendelian (monogenic)
Most notable examples involve disorders of cholesterol metabolism
Minority of CAD in population
Complex (polygenic)
Clustering within families but not due to single gene mutations
Majority of CAD in population
Focus for today
Case presentation• Chief complaint: “I am homozygous for the risk
allele at 9p21”
• 43 yo male• Otherwise healthy
• Family history:• Paternal uncle: MI in 50s
• Paternal aunt: MI in 50s
• No medications
• Physically active without chest discomfort
• BP 112/60, exam unremarkable
• TC 180, LDL 115, normal hsCRP
Patient HandoutPatient Handout 1/1
REQUESTING PHYSICIAN / INSTITUTION:
Jane Doe ID: n/a
Female/ ! " #" $%&
SA&*+! " Sample ID: DGMI/0&*+!
ABC Hospital/Dr. John Smith
! ! Main Street' An(to)n' %!* + I , - S
* * * " 1#" 1#2
NAME:
Gender/DOB:
De.ode ID:
Date Colle.ted: ! " %"1!!$ Date 3e.ei4ed: ! " $"1! !$ Date 3eported: !"1%"1!!$
GENE5IC 5ES5 3ES - ,5S 6 7A5IEN5 HANDO-5
8 O - 3 GENE5IC 3E,A5I9E
3 I S :
2.35e;<als # * = in.reased ris>' o4er
?eneral pop<lation ris> o@ . !
This means that you are, irrespective of age or gender, at 135%
increased risk of having MI (heart attack) relative to the average risk
of the white population. This test measures 8 variants in the DNA
sequence you were born with.
GENETIC RISK SCA E
7O7-,A5ION 3 I S :
DIS53IB-5ION
AAo<t ! . 1 = o@the )hite pop<lation ) i l l ha4e the similar ris> res<lts
as (o< )hereas aAo<t ! . ! = ha4e hi?her ris> and aAo<t $$.&= ha4e
lo)er ris> than (o<.
Note: An indi4id<al ) ho has hi?her ?eneti. ris> is not destined to
ha4e a heart atta.> and a patient at lo)er ?eneti. ris> is not @ree o@
heart atta.> ris>. 5his is a ris> test' not a determinati4e test.
8 O - 3 O9E3A, , 3 I S : A more .omplete ! (ear ris> estimate @or .oronar( heart disease
.an Ae deri4ed A( m<ltipl(in? the ris> deri4ed @rom .ommonl( <sed ris> s.orin? al?orithms ) i th the relati4e ?eneti. ris> res<lts o@the deCODEMI
5M
test. 5he s.orin? al?orithms ta>e into a..o<nt the
indi4id<alBs a?e' seC' Alood press<re' smo>in? histor( and Alood lipids. Cons<lt ) i th (o<r ph(si.ian.
NO5E
MI SAME AS HEA35 A55AC: M(o.ardial [email protected] DMIE is the same as heart atta.> and is one o@the ) a ( s that .oronar( heart
disease presents itsel@.
3EFE3ENCE 7O7-,A5ION T!e"e #e"u$t" on$% a&&$% to ' ! i t e indi(idua$" o) Eu#o&ean an*e"t#%.5M
Common variants at 30 loci contribute to polygenic dyslipidemia
Sekar Kathiresan*1–5,37,38, Cristen J Willer6,37, Gina M Peloso4,7,37, Serkalem Demissie4,7,37, Kiran Musunuru1,2, Eric E Schadt8, Lee Kaplan9, Derrick Bennett10, Yun Li6, Toshiko Tanaka11, Benjamin F Voight2,3,12,Lori L Bonnycastle13, Anne U Jackson6, Gabriel Crawford3, Aarti Surti3, Candace Guiducci3, Noel P Burtt3,Sarah Parish10, Robert Clarke10, Diana Zelenika14, Kari A Kubalanza13, Mario A Morken13, Laura J Scott6, Heather M Stringham6, Pilar Galan15, Amy J Swift13, Johanna Kuusisto16, Richard N Bergman17,Jouko Sundvall18, Markku Laakso16, Luigi Ferrucci11, Paul Scheet6, Serena Sanna19, Manuela Uda19,
AR T I C L E S
64 genetic loci for CAD (58
published)
Deloukas at al, Nat Genet 2013Deloukas et al, Nat Genet 2013
Common va dyslipidemia riants at 30 loci contribute to polygenic
Cristen J Willer6,37, Gina M Peloso4,7,37, Serkalem Demissie4,7,37, Kiran Musunuru1,2,9, Derrick Bennett10, Yun Li6, Toshiko Tanaka11, Benjamin F Voight2,3,12,
Sekar Kathiresan*1–5,37,38, Eric E Schadt8, Lee KaplanLori L Bonnycastle13, Anne U Jackson6, Gabriel Crawford3, Aarti Surti3, Candace Guiducci3, Noel P Burtt3,Sarah Parish10, Robert Clarke10, Diana Zelenika14, Kari A Kubalanza13, Mario A Morken13, Laura J Scott6, Heather M Stringham6, Pilar Galan15, Amy J Swift13, Johanna Kuusisto16, Richard N Bergman17,Jouko Sundvall18, Markku Laakso16, Luigi Ferrucci11, Paul Scheet6, Serena Sanna19, Manuela Uda19,
AR T I C L E S
1/3 map to known risk factors
(genes for lipids and BP)
2/3 potentially provide
additional information beyond
traditional risk factors
64 genetic loci for CAD (58
published)
What genetic factors associate with CAD?
Stratifying CAD risk
Modifying genetic CAD risk
Can genetics inform risk assessment?
Deloukas et al, Nat Genet 2013
9p21 Locus
9p21 and risk for CAD
Lead polymorphism at 9p21: G and T alleles
GG GT TT
Ris
kofM
I
Patient HandoutPatient Handout 1/1
REQUESTING PHYSICIAN / INSTITUTION:
Jane Doe ID: n/a
Female/ ! " #" $%&
SA&*+! " Sample ID: DGMI/0&*+!
ABC Hospital/Dr. John Smith
! ! Main Street' An(to)n' %!* + I , - S
* * * " 1#" 1#2
NAME:
Gender/DOB:
De.ode ID:
Date Colle.ted: ! " %"1!!$ Date 3e.ei4ed: ! " $"1! !$ Date 3eported: !"1%"1!!$
GENE5IC 5ES5 3ES - ,5S 6 7A5IEN5 HANDO-5
8 O - 3 GENE5IC 3E,A5I9E
3 I S :
2.35e;<als # * = in.reased ris>' o4er
?eneral pop<lation ris> o@ . !
This means that you are, irrespective of age or gender, at 135%
increased risk of having MI (heart attack) relative to the average risk
of the white population. This test measures 8 variants in the DNA
sequence you were born with.
GENETIC RISK SCA E
7O7-,A5ION 3 I S :
DIS53IB-5ION
AAo<t ! . 1 = o@the )hite pop<lation ) i l l ha4e the similar ris> res<lts
as (o< )hereas aAo<t ! . ! = ha4e hi?her ris> and aAo<t $$.&= ha4e
lo)er ris> than (o<.
Note: An indi4id<al ) ho has hi?her ?eneti. ris> is not destined to
ha4e a heart atta.> and a patient at lo)er ?eneti. ris> is not @ree o@
heart atta.> ris>. 5his is a ris> test' not a determinati4e test.
8 O - 3 O9E3A, , 3 I S : A more .omplete ! (ear ris> estimate @or .oronar( heart disease
.an Ae deri4ed A( m<ltipl(in? the ris> deri4ed @rom .ommonl( <sed ris> s.orin? al?orithms ) i th the relati4e ?eneti. ris> res<lts o@the deCODEMI
5M
test. 5he s.orin? al?orithms ta>e into a..o<nt the
indi4id<alBs a?e' seC' Alood press<re' smo>in? histor( and Alood lipids. Cons<lt ) i th (o<r ph(si.ian.
NO5E
MI SAME AS HEA35 A55AC: M(o.ardial [email protected] DMIE is the same as heart atta.> and is one o@the ) a ( s that .oronar( heart
disease presents itsel@.
3EFE3ENCE 7O7-,A5ION T!e"e #e"u$t" on$% a&&$% to ' ! i t e indi(idua$" o) Eu#o&ean an*e"t#%.5M
Impact of Adding a Single Allele in the 9p21 Locus to Traditional Risk Factors on Reclassification of Coronary Heart Disease Risk and Implications for Lipid-Modifying
Therapy in the Atherosclerosis Risk in Communities Study
Ariel Brautbar, MD; Christie M. Ballantyne, MD; Kim Lawson, MS; Vijay Nambi, MD; Lloyd
Chambless, PhD; Aaron R. Folsom, MD; James T. Willerson, MD; Eric Boerwinkle, PhD
Cardiovascular Disease Risk Prediction With and Without Knowledge of Genetic Variation at Chromosome 9p21.3Nina P. Paynter, PhD; Daniel I. Chasman, PhD; Julie E. Buring, ScD; Dov Shiffman, PhD; Nancy R. Cook, ScD; and Paul M Ridker, MD, MPH
>20,000 white women from Women’s Genome Health Study: Median age 52
No improvement over traditional risk factorsPaynter et al. Annals Int Med 2009
~10,000 white men and women from ARIC: Median age 54
Minimal improvement over traditional risk factorsBrautbar et al. Circ Cardvasc Gen 2009
Top loci associated with MI or CAD
Locus Risk allele frequencyOdds ratio of disease
for risk allele
9p21 46% 1.29
SLC5A3–MRPS6-KCNE2 85% 1.12
LDLR 23% 1.14
WDR12 15% 1.14
MIA3 26% 1.11
SORT1 22% 1.09
PSCK9 8% 1.07
Schunkert et al. Nat Gen 2011
Odds ratio of CAD at most loci:
between 1.05 – 1.3
1. Individual loci of weak effect unlikely
to effectively stratify risk
2. What if we could combine information
from all CAD loci together?
Articles
Genetic risk, coronary heart disease events, and the clinical benefit of statin therapy: an analysis of primary and secondary preventiontrials
Jessica L Mega*,NathanOStitziel*, JGustav Smith, Daniel I Chasman,Mark JCaulfield, James JDevlin, FrancescoNordio, Craig L Hyde,
SummaryBackground Genetic variants have been associated with the risk of coronary heart disease. In this study, we testedwhether or not a composite of these variants could ascertain the risk of both incident and recurrent coronary heartdisease events and identify those individuals who derive greater clinical benefit from statin therapy.
V O L U M E 335 O C T O B E R 3 , 1 9 9 6 NUMB ER 14
T H E E F F E C T OF PRAVASTATIN ON CORONARY EVEN TS AFTER MYOCARDIAL INFARCTION IN PATIENTS
WITH AVERAGE C H O L E S T E RO L LEVELS
F R A N K M. S A C K S , M.D., M A R C A. PF E F F E R , M.D., PH.D., L E M U E L A. M O Y E , M.D., PH.D., J E A N L. R O U L E A U , M.D.,
J O H N D. R U T H E R F O R D , M.D., T H O M A S G. C O L E , PH.D., L I S A B R O W N , M.P.H., J . W A Y N E W A R N I C A , M.D.,J . M A L C O L M O. A R N O L D , M.D., C H U A N -C H U A N W U N , PH.D., B A R R Y R. DA V IS , M.D., PH.D.,
A N D E U G E N E B R A U N W A L D , M.D., F O R T H E C H O L E S T E R O L A N D R E C U R R E N T E V E N T S T R I A L I N V E S T I G A T O R S *
Calculated genetic risk for >48,000
participants of four statin therapy trialsThe new england
journal of medicineestablished in 1812 november 20,2008 vol. 359 no. 21
Rosuvastatin to Prevent Vascular Events in Men and Women with Elevated C-Reactive Protein
Paul M Ridker, M.D., Eleanor Danielson, M.I.A., Francisco A.H. Fonseca, M.D., Jacques Genest,M.D.,
Antonio M. Gotto, Jr., M.D., John J.P. Kastelein, M.D., Wolfgang Koenig, M.D., Peter Libby,M.D.,
Alberto J. Lorenzatti, M.D., Jean G. MacFadyen, B.A., Børge G. Nordestgaard, M.D., James Shepherd, M.D.,
James T. Willerson, M.D., and Robert J. Glynn, Sc.D., for the JUPITER StudyGroup*
Genetic risk score
27 genetic markers associated with
MI
Incre
asin
g r
isk
540 Number of risk alleles
Genetic risk score
“Low risk” Bottom 20%
“Intermediate risk”
“High risk” Top 20%
Genetic Risk
Score Category Ratio 95% CI
Low
Intermediate
High
Lower Risk Higher Risk
1.25 2.00.80 1.0
Ratio (95% CI)
Reference
1.34
1.72
1.22-1.47
1.55-1.92
P-Value
<0.0001
<0.0001
In placebo arms, genetic score stratifies risk
*Adjusted for traditional CV risk factors
What genetic factors associate with CAD?
Stratifying CAD risk
Modifying genetic CAD risk
Can genetics inform risk assessment?
There are genetic markers that are definitely
associated with CAD in collected studies
There are genetic markers that are definitively
associated with CAD in collected studies
1. Do those genetic factors prospectively
predict risk in independent populations?
Yes
2. Is genetic risk useful to measure and
is genetic risk modifiable?
Figure 8 LDL cholesterol burden in individualswith orwithout familial hypercholesterolaemiaas afunction of the age of initiationof statin therapy.
Data derived from Huijgen et al.20 and Starr et al.21 LDL, low-density lipoprotein; LDL-C, LDL cholesterol; HDL-C, high-density lipoprotein chol-
V O L U M E 335 O C T O B E R 3 , 1 9 9 6 NUMB ER 14
T H E E F F E C T OF PRAVASTATIN ON CORONARY EVEN TS AFTER MYOCARDIAL INFARCTION IN PATIENTS
WITH AVERAGE C H O L E S T E RO L LEVELS
F R A N K M. S A C K S , M.D., M A R C A. PF E F F E R , M.D., PH.D., L E M U E L A. M O Y E , M.D., PH.D., J E A N L. R O U L E A U , M.D.,
J O H N D. R U T H E R F O R D , M.D., T H O M A S G. C O L E , PH.D., L I S A B R O W N , M.P.H., J . W A Y N E W A R N I C A , M.D.,J . M A L C O L M O. A R N O L D , M.D., C H U A N -C H U A N W U N , PH.D., B A R R Y R. DA V IS , M.D., PH.D.,
A N D E U G E N E B R A U N W A L D , M.D., F O R T H E C H O L E S T E R O L A N D R E C U R R E N T E V E N T S T R I A L I N V E S T I G A T O R S *
Calculated genetic risk for >48,000
participants of four statin therapy trialsThe new england
journal of medicineestablished in 1812 november 20,2008 vol. 359 no. 21
Rosuvastatin to Prevent Vascular Events in Men and Women with Elevated C-Reactive Protein
Paul M Ridker, M.D., Eleanor Danielson, M.I.A., Francisco A.H. Fonseca, M.D., Jacques Genest,M.D.,
Antonio M. Gotto, Jr., M.D., John J.P. Kastelein, M.D., Wolfgang Koenig, M.D., Peter Libby,M.D.,
Alberto J. Lorenzatti, M.D., Jean G. MacFadyen, B.A., Børge G. Nordestgaard, M.D., James Shepherd, M.D.,
James T. Willerson, M.D., and Robert J. Glynn, Sc.D., for the JUPITER StudyGroup*