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1 HIV-1 co-infection does not reduce exposure to rifampicin, isoniazid, and 1 pyrazinamide in South African tuberculosis outpatients 2 Running title: HIV co-infection in pharmacokinetics of anti-TB drugs 3 Authors: Neesha Rockwood N 1,2 , Graeme Meintjes 1,2,4 , Maxwell Chirehwa 3 , Lubbe 4 Wiesner 3 , Helen McIlleron 3 , Robert J Wilkinson 1,2,4,5 , Paolo Denti 3 5 6 Affiliations: 1 Department of Medicine, Imperial College, London W2 1PG, UK 7 2 Clinical Infectious Diseases Research Initiative, Institute of Infectious Disease and 8 Molecular Medicine, University of Cape Town, South Africa 9 3 Division of Clinical Pharmacology, Department of Medicine, University of Cape 10 Town, South Africa 11 4 Department of Medicine, University of Cape Town, South Africa 12 5 Francis Crick Institute Mill Hill Laboratory, London, NW7 1AA UK 13 14 Contact information for corresponding author: 15 Dr. Paolo Denti 16 K45, Old Main Building, Groote Schuur Hospital 17 Observatory 7925 18 South Africa 19 Tel: +27 21 404 7719 20 Fax: +27 21 448 1989 21 E-mail: [email protected] 22 AAC Accepted Manuscript Posted Online 1 August 2016 Antimicrob. Agents Chemother. doi:10.1128/AAC.00480-16 Copyright © 2016 Rockwood et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. on April 13, 2018 by guest http://aac.asm.org/ Downloaded from
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HIV-1 co-infection does not reduce exposure to rifampicin, isoniazid, and 1

pyrazinamide in South African tuberculosis outpatients 2

Running title: HIV co-infection in pharmacokinetics of anti-TB drugs 3

Authors: Neesha Rockwood N1,2, Graeme Meintjes 1,2,4, Maxwell Chirehwa3, Lubbe 4 Wiesner3, Helen McIlleron 3, Robert J Wilkinson1,2,4,5, Paolo Denti3 5

6

Affiliations: 1 Department of Medicine, Imperial College, London W2 1PG, UK 7

2 Clinical Infectious Diseases Research Initiative, Institute of Infectious Disease and 8 Molecular Medicine, University of Cape Town, South Africa 9

3 Division of Clinical Pharmacology, Department of Medicine, University of Cape 10 Town, South Africa 11

4 Department of Medicine, University of Cape Town, South Africa 12

5 Francis Crick Institute Mill Hill Laboratory, London, NW7 1AA UK 13

14

Contact information for corresponding author: 15

Dr. Paolo Denti 16

K45, Old Main Building, Groote Schuur Hospital 17

Observatory 7925 18

South Africa 19

Tel: +27 21 404 7719 20

Fax: +27 21 448 1989 21

E-mail: [email protected]

AAC Accepted Manuscript Posted Online 1 August 2016Antimicrob. Agents Chemother. doi:10.1128/AAC.00480-16Copyright © 2016 Rockwood et al.This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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Abstract (227 words) 23

There is contrasting data in the literature about anti-tuberculosis plasma drug 24

concentrations in HIV-1 co-infected patients. We report pharmacokinetics of 25

rifampicin, isoniazid, and pyrazinamide in a cohort of patients being treated for active 26

tuberculosis, the majority of whom were HIV-1 co-infected and commenced 27

antiretroviral therapy within 2 months of starting anti-tuberculosis treatment. We also 28

examined the association between anti-tuberculosis drug concentrations and 29

reported drug side-effects at 2-month clinical review. 30

One hundred patients with pulmonary tuberculosis (65% HIV-1 co-infected) were 31

intensively sampled to determine rifampicin, isoniazid, and pyrazinamide plasma 32

concentrations after 7-8 weeks of a daily quadruple therapy regimen, dosed 33

according to World Health Organization weight bands. Pharmacokinetic parameters 34

were determined for each patient using nonlinear mixed-effects models. 35

HIV-1 co-infected patients had lower clearance of rifampicin (21% decrease) and 36

isoniazid (23% decrease) compared with HIV-1 uninfected patients, with resulting 37

higher AUC0-24hr and Cmax. Antiretroviral therapy (ART) that included double standard 38

dose lopinavir/ritonavir further lowered rifampicin clearance by 46% and increased 39

AUC0-24hr. Current uniform dosing per kilogram of body weight across WHO weight 40

bands was associated with a trend of decreased pharmacokinetic exposures in the 41

lowest weight-band. Use of fat-free mass for allometric scaling of clearance, as 42

opposed to total body weight, significantly improved the model. 43

Ambulant HIV-1 co-infected patients, the majority of whom were co-prescribed ART, 44

did not have reduced anti-tuberculosis drug concentrations compared with HIV-1 45

uninfected patients. 46

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Main text (3219 words) 47

Despite global initiatives prioritising reduction of incidence and mortality attributable 48

to tuberculosis (TB), in 2014 there were an estimated 9.6 million new TB cases (12% 49

were HIV-1 co-infected) and 1.5 million deaths (27% were HIV-1 co-infected) (1). In 50

the case of rifampicin-susceptible pulmonary tuberculosis, World Health 51

Organization (WHO) guidelines advocate a daily regimen inclusive of 2 months of 52

intensive phase therapy with first line drugs rifampicin, isoniazid, pyrazinamide, and 53

ethambutol followed by 4 months of continuation phase therapy with rifampicin and 54

isoniazid. Fixed dose combination formulation (FDC) tablets are widely used to 55

deliver standardized doses according to weight(2). 56

There are multiple causes leading to significant inter-individual pharmacokinetic 57

variability including pharmacogenomics (3, 4), sex (5, 6), weight(6), and co-58

morbidities like diabetes mellitus (5, 7-9) There have been contrasting findings 59

published regarding the effect of HIV-1 co-infection on anti-TB drug 60

pharmacokinetics with some studies showing reduced drug exposures (10-12) and 61

others no significant difference between HIV-1 co-infected and uninfected patients 62

(5, 13-15). Of note, cohorts studied had varying degrees of nutritional deprivation, 63

immunosuppression, and varying proportions concurrently taking antiretroviral 64

therapy (ART). As other studies have shown contradictory findings on the role of 65

plasma drug concentrations on anti-TB, we thus wished to further address this in a 66

contemporary cohort with good access to ART resulting in many patient being on 67

ART and HIV1- co-infected patients generally being less advanced in terms of 68

immunosuppression than in historical reports. 69

We hypothesized there would be lower plasma drug concentrations of anti-TB drugs 70

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in HIV-1 co-infected patients compared with HIV-1 uninfected patients. We aimed to 71

assess pharmacokinetic parameters for rifampicin, isoniazid and pyrazinamide in a 72

cohort with a good sample size, utilizing strong pharmacokinetic analysis methods to 73

allow relatively accurate delineation and attribution of PK variability. Due to 74

budgetary constraints we focused on the 3 drugs with foremost importance in the 75

anti-TB regimen (16). 76

The relationship between drug concentrations of standard dose first line anti-TB 77

drugs and drug side effect profiles is unclear. Serious adverse drug reactions 78

(Common Terminology Criteria for Adverse Events (CTCAE)(17) grade 3 and above) 79

such as drug-induced hepatotoxicity are well documented and can sometimes be 80

attributed to a specific anti-TB drug based upon temporality, cessation and 81

sequential drug re-challenge(18) . Mild to moderate drug side-effects of CTCAE 82

grades 1-2 are common (19-21). Even though they may be difficult to attribute to a 83

specific anti-TB drug with any certainty, they are likely to contribute to sub-optimal 84

adherence (22) and may adversely affect treatment outcomes (19). 85

We also aimed to determine whether plasma drug concentrations were associated 86

with reported drug side effects at 2 months. 87

MATERIALS AND METHODS 88

Patients 89

Patients with GeneXpert ® MTB/RIF confirmed rifampicin-susceptible pulmonary TB 90

were recruited at Ubuntu HIV/TB clinic, Site B, Khayelitsha, South Africa as part of a 91

prospective cohort study (Human Research Ethics Committee approval 568/2012) 92

assessing frequency and determinants of acquired drug resistance in a 93

programmatic setting. A sub-cohort was invited to participate in a nested 94

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pharmacokinetic study between July 2013 and April 2014. All patients provided 95

written consent prior to participation. Detailed sociodemographic data, past TB 96

treatment history and co-morbidity data were collected. Participants underwent HIV 97

testing (Abbott Architect HIV Ag/Ab Combo test) and CD4 lymphocyte count and 98

HIV-1 viral load quantification at baseline. Anti-TB drugs were delivered in a 4-drug 99

FDC supplied by the National Tuberculosis Control Programme (Rifafour® e-275 100

,Sanofi-Aventis or Ritib®, Aspen, South Africa). Each tablet contained rifampin at 101

150 mg, isoniazid at 75 mg, pyrazinamide at 400 mg, and ethambutol at 275 mg. 102

Weight band-based dosing was used in line with WHO guidelines(2). Patients 103

weighing 38 to 55 kg, >55 to 70 kg, and >70 kg were given doses of 3, 4, and 5 104

tablets, respectively. Anti-TB drugs was administered 7 days/week, along with 25mg 105

pyridoxine. Clinical care remained the responsibility of Site B TB clinic. 106

Characterization of side effects 107

Patients were interviewed at the 2-month clinical review using a systems-based 108

symptom questionnaire that included the categories central nervous 109

/neuropsychiatric, peripheral nervous, gastrointestinal, musculoskeletal, skin and 110

other. Attribution of causality to the anti-TB regimen was made in the 111

“probable”/“possible” categories as per WHO-Uppsala Monitoring Center system(18). 112

Pharmacokinetics 113

Pharmacokinetic sampling was carried out for rifampicin, isoniazid, and 114

pyrazinamide after 7-8 weeks of anti-TB drugs. This time point was chosen to 115

maximise applicability to a programmatic setting, i.e. point of routine evaluation prior 116

to switching from intensive phase to continuation phase therapy. In addition, this time 117

point ensured a majority of HIV-1 co-infected patients were prescribed ART and 118

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rifampicin autoinduction would be complete. Patients were fasted 8 hours on the day 119

of pharmacokinetic study and consumed standardized meals at 2 hours and 4-5 120

hours post dose. Blood samples were obtained immediately before (pre-dose) and 1, 121

2, 3, 4, 6, and 8 hours after drug ingestion. They were immediately placed on ice and 122

plasma separated by centrifugation within 30 min, before storage at -80°C until 123

analysis. The storage tubes containing the plasma samples were transferred on dry 124

ice to the Pharmacology Laboratory at the University of Cape Town, where drug 125

concentrations were determined using validated liquid chromatography tandem mass 126

spectrometry methods. The methods were validated over the concentration ranges 127

0.0977 to 26.0 µg/mL for isoniazid, 0.117 to 30.0 µg/mL for rifampicin and 0.200 to 128

80.0 µg/mL for pyrazinamide. (23). The % nominal concentration (accuracy) for 129

rifampicin was 99.2%, 98.1% and 99.4%, for isoniazid was 100.5%, 100.1% and 130

99.4%, and for pyrazinamide was 100.8%, 103.7% and 102.1% at the low, medium, 131

and high quality control levels respectively, during inter-day sample analysis. The 132

precision (% CV) was less than 3% at low, medium, and high quality control levels. 133

Concentrations of rifampicin, isoniazid, and pyrazinamide below the validation range 134

of the assay were reported as “below the limit of quantification” (BLQ). 135

136

Plasma concentration-time data from all subjects were simultaneously analysed by a 137

non-linear mixed-effects model utilising Monolix (version 4.3.3)(24). Previously 138

published structural models were selected and optimized on the current data (25-27). 139

The structural models tested included one- and two- compartment disposition with 140

first-order elimination and first-order absorption, testing the presence of an 141

absorption lag time or a delay modelled via a chain of transit compartments. Inter-142

occasional variability (IOV) was included by treating the drug concentration 143

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measured prior to the observed dose administration (pre-dose concentration) as a 144

separate pharmacokinetic occasion. Random inter-individual variability (IIV) and IOV 145

were assumed log-normally distributed, and correlations between the random effects 146

was tested. A mixture model was evaluated to explore the multi-modal distribution of 147

isoniazid CL, due to the polymorphic N-acetyltransferase-2 (NAT2) gene. Data points 148

which were BLQ were treated as censored and handled with the Monolix 149

implementation of the M3 method (28). Allometric scaling with either total body 150

weight, or fat-free mass (FFM)(29) was applied to clearance (CL) and volume of 151

distribution (V), as suggested by Anderson and Holford (30). Fat-free mass was 152

calculated using the empirical model developed by Janmahasatian et al (31). 153

= ∙ ∙∙ ∙ where Wt denotes body weight in kg, Ht is height in m, and the constants WHSmax 154

and WHS50 have the value of 42.92 and 30.93 in men, and 37.99 and 35.98 in 155

women, respectively. 156

157

Other covariates tested included the effect of sex, age, serum albumin, total protein, 158

HIV serostatus, CD4 lymphocyte count (as a binary variable above and below 200 159

cells/mm3), type of ART (none vs. non-nucleoside reverse transcriptase (NNRTI)-160

based vs. protease inhibitor (PI)-based), total dose, and dose in mg/kg. Model 161

development and selection was based on optimisation of the objective function value 162

(OFV), inspection of goodness of fit plots including visual predictive checks (n=500), 163

and biological plausibility. Stepwise covariate selection was performed using a drop 164

in OFV of >3.84 (corresponding to a significance level of 5%) as the cut-off for 165

inclusion and an increase of >6.63 OFV points as a cut-off for the backward 166

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elimination step. The OFV was obtained using Importance Sampling (n=20000) and 167

the precision of the parameter estimates was obtained using the stochastic 168

approximation to the Fisher information matrix. 169

Finally, model-based individual pharmacokinetic parameter values referring to the 170

pharmacokinetic profile after the observed dose were used in the R package Simulx 171

(32) to simulate steady-state individual profiles and calculate peak concentration 172

(Cmax) and area under the concentration-time profile curve from 0 to 24 hours (AUC0-173

24). 174

Statistical analyses 175

The Wilcoxon-Mann-Whitney test was used to compare PK exposures between 176

those with side effects and those without. Logistic regression analyses were used to 177

calculate odds ratios for side effects at different drug exposure quartiles and 178

adjusted for potential confounders. Stata version 13.1 (College station, TX) and 179

GraphPad Prism 6.0 (La Jolla, CA) were used for all analyses.180

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Results 181

Patient demographics 182

Of the 100 study participants, 57% were male and 65% were HIV-1 co-infected with 183

a median CD4 lymphocyte count of 233 cells/mm3 (IQR 106-386). Amongst HIV-1 184

co-infected patients the proportion on ART increased from 27/65 (42%) at baseline 185

to 50/65 (77%) at the time of pharmacokinetic study with 45/50 (90%) on NNRTI-186

based (96% on efavirenz, 5% on nevirapine) regimens and 5/50 (10%) on protease 187

inhibitor (PI) based (Lopinavir/ritonavir (LPV/r)) regimens. 188

The median (IQR) body mass index (BMI) and age were 21 kg/m2 (19-23), 33 years 189

(29-40). Table 1 provides the clinical characteristics of the pharmacokinetic cohort, 190

stratified by HIV-1 serostatus. 191

192

Patient pharmacokinetic parameters 193

The population pharmacokinetic final parameter estimates for rifampicin, isoniazid, 194

and pyrazinamide are shown in tables 2-4, including the precision of parameter 195

estimates and shrinkage values for the random effects (33) .Visual predictive checks 196

are provided in Figure 1. 197

The optimised structural model for rifampicin was a one-compartment model with 198

first-order elimination and first-order absorption with an absorption lag time. A two-199

compartment model with first-order elimination and absorption through a series of 200

transit compartments was optimal for isoniazid. Finally, a one-compartment model 201

with first-order elimination, and transit compartment absorption was used for 202

pyrazinamide. FFM was found to be the most suitable body size descriptor for 203

allometric scaling of all CL and V parameters, and it improved the OFV by 20, 34, 204

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and 64 points for rifampicin, isoniazid, and pyrazinamide, respectively. 205

Since HIV-1 serostatus (infected vs. not infected) and ART status (on ART vs not on 206

ART) are collinear, the covariate effect “HIV-1 status” and “ART status” on the 207

pharmacokinetic parameters were tested separately. ‘HIV-1 status’ as a covariate 208

caused improvement in the model to greater extent than ‘ART status’ (7 point drop in 209

OFV, as compared to only 4) and diagnostics plots were better for the model 210

including HIV, hence this was selected in the final model rather than ART. The 211

models found that HIV-1 co-infection significantly decreased CL of rifampicin (21% 212

decrease, OFV drop 7.00, p<0.01, see Table 2) and isoniazid (23% decrease, OFV 213

drop 8.63, p<0.01, see Table 3). Inclusion of HIV-1 co-infection in the covariate 214

model, did not significantly improve the model fit for pyrazinamide. Although HIV-1 215

infected participants had lower FFM than HIV-1 uninfected participants (see Table 216

1), the effect of HIV-1 on CL was independent of differences in FFM. 217

We split ‘ART status’ into ‘type of ART’ (i.e. no ART, NNRTI-based ART, LPV/r-218

based ART) and tested it as a further covariate (in addition to the HIV effect). We 219

separately tested the effect of both NNRTI-based regimen (yes/no) and LPV/r-based 220

regimen (yes/no) as a covariate on bioavailability, V and CL in an optimised model 221

which was already adjusting for the effect of ‘HIV-1 status’ on CL. On top of the 222

effect of HIV-1 on CL, patients on double-dose LPV/r-based ART regimen (dosed at 223

800mg/200mg twice daily in all 5 cases) had a further significant decrease in 224

rifampicin CL of 46% (OFV drop 7.00, p<0.01) and hence, increased AUC0-24 (Table 225

2). When the model was re-run excluding the 5 participants on PI-based regimens, 226

the effect of HIV-1 on CL was still significant. 227

During model development, the multi-modal distribution of isoniazid CL attributed to 228

the polymorphic nature of the NAT2 genotype (3) was described using a mixture-229

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model which improved the model fit. However, the current version of Monolix does 230

not support both mixture modelling and estimation of inter-occasional variability, 231

which was used to describe variability in the pre-dose sample, so the latter was 232

included because it was more significant in terms of model fit. 233

Figure 2 shows Cmax and AUC0-24 stratified by HIV-1 serostatus. For all 3 drugs, 234

pharmacokinetic exposures were either increased in those HIV-1 infected or no 235

difference was detected. There were no differences in exposures, comparing HIV-1 236

infected patients with CD4 lymphocyte counts above or below 200 cells/mm3. In HIV-237

1 infected participants, 41% had low isoniazid Cmax (<3mg/L), 75% had low rifampicin 238

Cmax (<8mg/L) and 31% had low pyrazinamide Cmax (<35mg/L) (34). In HIV-1 239

uninfected participants, 46% had low isoniazid Cmax, 88% had low rifampicin Cmax 240

and 63% had low pyrazinamide Cmax. 241

The range of doses in milligrams per kilogram of body weight for the 3 drugs are 242

shown in Table 1. Eight participants required change in weight band during 243

treatment. Three had their dose adjusted appropriately, one was put in a weight 244

band higher than his weight and 4 were put in a weight band lower than their weight. 245

Hence, on the day of pharmacokinetic sampling, 95 participants were being dosed 246

correctly according to current weight and weight band. Patients in the lowest weight 247

band had lower drug exposures and this was explained by a relatively higher CL in 248

smaller individuals. Figure 3 shows differences in pharmacokinetic exposures 249

stratified by the WHO weight band doses assigned by the programme. The 250

predictions shown included allometric scaling with FFM, which accounted for the 251

increased clearance per kilogram of body weight in smaller individuals and resulted 252

in a significant improvement of the model. 253

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All side-effects were CTCAE grade 1-2 and did not require drug withdrawal. Thirty-254

five participants (35%) reported CTCAE grade 1-2 side effects which were 255

possibly/probably attributed to anti-TB drugs including central nervous system/neuro-256

psychiatric (4/35), peripheral neuropathy (7/35), nausea/gastro-intestinal (11/35), 257

musculoskeletal (11/35), skin (8/35), other (2/35). Patients presenting side effects 258

had a significantly higher median Cmax for isoniazid [4.42 mg/L (IQR 2.79-5.51)] 259

compared with those who did not [2.89 mg/L (IQR 2.28-3.87, p=0.001)]. Having 260

adjusted for age, HIV-1 serostatus, diabetes mellitus status, alcohol intake, age, and 261

previous isoniazid treatment, the highest quartile of isoniazid AUC 0-24 was still 262

associated with increased side effects [OR 7.11 (95% CI 1.99- 25.47, p=0.003)] 263

compared with the lowest quartile of isoniazid AUC0-24 (see table 5). There were no 264

significant differences for rifampicin or pyrazinamide (Figure 4). Although there was a 265

trend of high isoniazid Cmax in those with central nervous system, peripheral nervous 266

system, gastro-intestinal, and musculoskeletal side-effects, this was only statistically 267

significant for musculoskeletal side effects. A significantly higher pyrazinamide Cmax 268

was also seen in patients with musculoskeletal side effects (Figure 4). 269

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Discussion 270

Peak concentrations and AUC0-24 of rifampicin, isoniazid, and pyrazinamide were low 271

and highly variable, and findings were comparable with other cohorts in both similar 272

(Southern African) (6, 10, 13, 35, 36) and different (37-39) study populations. There 273

have been previous studies examining anti-TB pharmacokinetics in HIV-1 co-274

infected patients with a HIV-1 uninfected comparator group. However, none of these 275

studies included HIV-1 co-infected patients concomitantly taking ART. Reduced 276

rifampicin concentrations have been recorded in HIV-1 co-infected patients with 277

diarrhoea and this has been associated with malabsorption and advanced 278

immunosuppression (11, 40, 41). Further studies have also shown evidence for 279

reduced rifampicin concentration in HIV-1 co-infected patients (10, 12), whilst others 280

show no significant difference (5, 13, 15, 42). There have also been contrasting 281

results in the literature regarding the effect of HIV-1 co-infection on pyrazinamide 282

concentrations (10, 43). 283

In this cohort of ambulatory patients, with 77% of HIV-1 co-infected patients on ART, 284

there was no evidence of lower plasma concentrations of rifampicin, isoniazid, or 285

pyrazinamide in HIV-1 co-infected patients. Conversely, the population 286

pharmacokinetic model, which accounted for the effect of FFM, showed evidence of 287

reduced rifampicin and isoniazid CL in HIV-1 co-infected compared to HIV-1 288

uninfected patients leading to increased AUC 0-24. 289

Although use of ART or CD4 stratification as a covariate did not significantly improve 290

the model, there was an independent effect of “LPV/r” vs “no LPV/r” on rifampicin 291

AUC0-24, again explained by a reduction in CL. Although only 5 patients in the study 292

were on an ART regimen inclusive of LPV/r, this effect of double dose LPV/r on 293

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rifampicin exposures was statistically significant. This has not been reported 294

previously. Rifampicin is a substrate of p-glycoprotein and organic anion-transporting 295

polypeptide (OATP) 1B1 and OATP 1B3 which are involved in its transporter-296

mediated efflux in the liver and hence, biliary clearance. Lopinavir and ritonavir are 297

inhibitors of both p-glycoprotein and OATP1/3(44). Hence, this may be a potential 298

mechanism for decreased clearance of rifampicin. Inhibition of gastrointestinal p-299

glycoprotein could also increase systemic rifampicin concentrations. There are 300

potential implications for dosing and toxicity profiles, particularly in future regimens 301

incorporating higher dose/kg of rifampicin and these findings should be explored in 302

further pharmacokinetic studies. These results provide evidence that, at the time of 303

switch to continuation phase, ambulant HIV-1 co-infected patients who are 304

reconstituting on ART, do not have reduced anti-TB drug concentrations compared 305

with HIV-1 uninfected patients. These findings are not necessarily generalizable to 306

HIV-1 co-infected patients in an inpatient setting, or those with advanced 307

immunosuppression (median CD4 of this cohort was 233 cells/mm3). 308

As previously reported (6), weight and in particular FFM, influenced CL in a non-309

linear fashion and hence uniform dosing in mg/kg across the WHO weight bands, 310

was associated with the lowest weight band having a trend of lower drug 311

concentrations compared with the highest weight band. Therefore, dosing could be 312

optimised according to FFM and in particular, dosing for the lower weight band 313

should be reviewed. 314

Having adjusted for potential confounders, there was still a significantly increased 315

proportion of side-effects in patients with the highest isoniazid AUC0-24 quartile. 316

Overall incidence of drug side-effects secondary to isoniazid reported in the literature 317

ranges from 1-3% for dermatological, gastrointestinal and neurological side effects, 318

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to 1-17% for hypersensitivity reactions (20). Thirteen of the 16 patients who had side 319

effects and were in the highest isoniazid AUC0-24 quartile were HIV-1 co-infected. 320

Studies have shown that 8-20% of patients taking isoniazid can develop anti-nuclear 321

antibodies. This is increased in slow acetylators (45) and may be potentiated in HIV-322

1 co-infection. One randomized controlled clinical trial conducted in Japan, showed 323

that isoniazid related liver injury in the first 8 weeks of anti-TB treatment occurred in 324

78% of slow acetylators given standard 5 mg/kg dose compared to 0% in slow 325

acetylators given 2.5 mg/kg dose (46). Hence, significant pharmacokinetic variability 326

for isoniazid, even at standard dosing, may be contributing to toxicity. 327

There were several limitations in this study. Pharmacogenomic data such as NAT-2 328

and SLCO1B1 genotype was not available for incorporation into the population PK 329

models. Drug concentrations sampling was not repeated at different times during 330

treatment and hence may have under/over-estimated IOV secondary to change in 331

weight and immune reconstitution secondary to ART. A previous study in HIV-1 co-332

infected patients did not find an independent effect of first dose ART or steady state 333

ART (at 2 weeks) on TB pharmacokinetics compared with day 1 of anti-TB drugs (6). 334

There was no routine monitoring of blood tests such as liver and renal function. 335

Hence, asymptomatic adverse drug reactions would not have been ascertained. 336

In this outpatient setting with a high burden of HIV-1 co-infected patients, the 337

majority of whom were immune reconstituting on ART, there was no evidence that 338

HIV-1 co-infection led to lower anti-TB drug concentrations. 339

Funding information 340

Robert J.Wilkinson is supported by the Wellcome Trust [WT 104803 ; WT084323], 341

UK MRC [UKMRC U1175.02.002.00014] and the European Union [EU FP7 342

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HEALTH-F3-2012-305578] and the National Research Foundation (NRF) of South 343

Africa (96841). Graeme Meintjes was supported by the Wellcome Trust 344

(098316), the South African Research Chairs Initiative of the Department of Science 345

and Technology and National Research Foundation (NRF) of South Africa (Grant No 346

64787), NRF incentive funding (UID: 85858) and the South African Medical 347

Research Council through its TB and HIV Collaborating Centres Programme with 348

funds received from the National Department of Health (RFA# SAMRC-RFA-CC: 349

TB/HIV/AIDS-01-2014). Helen McIlleron was supported in part by the NRF of South 350

Africa [grant 90729]. 351

The funders had no role in the study design, data collection, data analysis, data 352

interpretation, or writing of this report. The opinions, findings and conclusions 353

expressed in this manuscript reflect those of the authors alone. 354

Acknowledgements 355

We wish to acknowledge the National Institute of Allergy and Infectious Diseases 356

(NIAID) who support the overall running of the analytical laboratory at the 357

department of Clinical Pharmacology, University of Cape Town through award 358

numbers UM1 AI068634, UM1 AI068636, UM1 AI106701 and U01 AI068632. The 359

Division of Clinical Pharmacology at the University of Cape Town would like to 360

gracefully acknowledge Novartis Pharma for their support of the development of 361

pharmacometrics skills in Africa. 362

Author Contributions 363

NR, HM, RJW and GM conceived and designed the experiments; RJW contributed 364

materials and reagents; NR recruited, sampled and collected data from patients; LW 365

did the LC-MS work; NR, PD, MC and HM analysed the data; NR, PD, GM, HM and 366

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RJW contributed intellectual input; NR, PD, HM, GM and RJW drafted the 367

manuscript; all authors approved the final version of the manuscript. 368

Conflict of Interest Statement 369

No author declares a conflict of interest.370

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41. Gurumurthy P, Ramachandran G, Hemanth Kumar AK, Rajasekaran S, 509 Padmapriyadarsini C, Swaminathan S, Bhagavathy S, Venkatesan P, 510 Sekar L, Mahilmaran A, Ravichandran N, Paramesh P. 2004. Decreased 511 bioavailability of rifampin and other antituberculosis drugs in patients with 512 advanced human immunodeficiency virus disease. Antimicrob Agents 513 Chemother 48:4473-4475. 514

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534

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Table 1: Clinical characteristics of the cohort stratified by HIV-1 serostatus

Clinical characteristic* Whole PK

cohort (N=100)

HIV-1 infected (N=65)

HIV-1 uninfected (N=35)

Male n (%) 57 (57) 30 (46) 27 (77)

Xhosa ethnicity n (%) 98 (98) 63 (97) 35 (100)

Median age/years (IQR) 33 (29-40) 34 (30-40) 32 (27-38)

Smoking history n (%):

Current

Previous

Never

24 (24)

27 (27)

49 (49)

9 (14)

19 (29)

37(57)

15 (43)

8 (23)

12 (34)

Alcohol consumption n (%) 37 (37) 16 (25) 17 (49)

Recreational drug use n (%) 5 (5) 3 (5) 2 (6)

Previously in prison n (%) 14 (14) 10 (15) 4 (11)

Previous mining history n (%) 5 (5) 1 (1) 4 (11)

Retreatment n (%) 39 (39) 29 (45) 10 (29)

Type 2 Diabetes Mellitus n (%) 4 (4) 3 (5) 1 (3)

Median BMI at baseline (IQR), kg/m2 21 (19-23) 21 (20-23) 20 (19-23)

Median BMI at PK study (IQR), kg/m2

Median FFM at PK study (IQR), kg

21.5 (20-23)

45 (38-49)

22 (20-23)

40.5 (36-47)

20.5 (19-23)

49 (46-51)

Median CD4 count (IQR), cells/mm3 233 (106-386)

VL<40 copies/mL at baseline n (%) 17 (26)

Median albumin at PK study (IQR), g/l 38 (34-40) 36 (34-39) 38 (40-43)

Median total protein at PK study (IQR), g/l 86 (79-92) 88 (82-93) 82 (75-86)

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Characteristics are reported at time of diagnosis (baseline) unless otherwise

specified (at PK visit or 2-month visit)

Abbreviations: BMI body mass index, FFM fat-free mass, ART antiretroviral therapy,

PK pharmacokinetic,

Months on ART at time of PK study (IQR) 1.32 (0-15.5)

Smear grading at baseline n (%):

3+

2+

1+

Scanty/negative

24 (24)

22 (22)

20 (20)

34 (34)

14 (21.5)

11 (17)

14 (21.5)

26 (40)

10 (29)

11 (31)

6 (17)

8 (23)

Median baseline time to culture positivity

/days (IQR)

10 (7-14) 12 (7-15) 8 (6.5-12.5)

Extensive radiological disease at baseline

n (%) 71 (71) 41 (63) 30 (86)

Cavities at baseline n (%) 52 (52) 32 (49) 20 (57)

mg/kg dose at PK study (range):

Rifampicin

Isoniazid

Pyrazinamide

10 (7-11.5)

5 (3.5-6)

26 (19-31)

10 (7-11.5)

5 (4-6)

26 (20-31)

10 (7-11.5)

5 (3.5-6)

25.5 (19-31)

Number of patients with side-effects of

tuberculosis treatment (%) 35 (35) 25 (38) 10 (29)

Poorly adherent as per pill counts/self-

report at 2-month review n (%) 10 (10) 8 (12) 2 (6)

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Table 2: Parameter values estimated by the final pharmacokinetic model for rifampicin

Parameter Estimated typical

value (95% CI)

Inter-individual or -occasional variability (95% CI), [shrinkage]*

Bioavailability (F) 1 (fixed) IOV: 29.1% (24.2% to 34.0%), [20%]

Absorption lag time (h) 0.691 (0.590 to

0.791) IOV: 76.2% (62.0% to 89.9%), [24%]

Absorption constant (h-1) 1.21 (1.03 to 1.38) IOV: 63.2% (49.0% to 77.5%), [26%]

Clearance/F – HIV- (L/h)** 25.1 (21.8 to 28.4)

IIV: 34.3% (28.8% to 39.8%), [10%] Clearance/F – HIV+ not on LPV/r (L/h)** 19.9 (17.8 to 21.8)

Clearance/F – HIV+ on LPV/r (L/h)** 10.8 (7.08 to 14.5)

Volume of distribution (L)** 56.4 (53.7 to 59.1)

Additive error (mg/L) 0.196 (0.174 to

0.218)

Proportional error (%) 15.0 (13.2 to 16.8)

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*Inter-individual and –occasional variability were assumed log normally distributed and are reported here as approximate %CV. For

Inter-occasional variability terms, the shrinkage is reported only for the occasion with intensive sampling (not the pre-dose).

**Clearance and volume of distribution have been allometrically scaled using individual values of fat-free mass (FFM), so the typical

values reported here refer to the median value of FFM in the cohort, 45 kg (e.g. a 1.7 m tall man weighing 51 kg)

Abbreviations: F bioavailability, HIV+/HIV- HIV-1-infected/uninfected, IIV Inter-individual variability, IOV inter-occasional variability,

LPV/r lopinavir/ritonavir

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Table 3: Parameter values estimated by the final pharmacokinetic model for isoniazid

Parameter Estimated mean population

value (95% CI) Inter-individual or inter-occasional

variability (95% CI), [shrinkage]*

Bioavailability (F) 1 (fixed) IOV: 32.3% (27.2% to 37.4%), [12%]

Mean transit time (h) 0.32 (0.12 to 0.51) IOV: 92.7% (65.3% to 120%), [35%]

Number of absorption transit compartments 2.04 (1.55 to 2.53)

Absorption constant (h-1) 1.20 (1.03 to 1.36) IOV: 17.7% (11.8% to 23.6%), [60%]

Clearance/F – HIV- (L/h)** 26.0 (21.1 to 30.9) IIV: 54.8% (46.9% to 62.6%), [3%]

Clearance/F – HIV+ (L/h)** 20.02 (12.9 to 25.2)

Volume of distribution of central compartment (L)** 31.9 (30.8 to 36.2)

Inter-compartmental clearance/F (L/h)** 12.6 (6.13 to 19.07)

Volume of distribution of peripheral compartment (L)** 21.4 (18.5 to 24.4)

Additive error (mg/L) 0.0146 (0.003 to 0.03)

Proportional error (%) 13.1 (11.9 to 14.3)

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*Inter-individual and –occasional variability were assumed log normally distributed and are reported here as approximate %CV. For

Inter-occasional variability terms, the shrinkage is reported only for the occasion with intensive sampling (not the pre-dose).

**All clearance and volume parameters have been allometrically scaled using individual values of fat-free mass (FFM), so the

typical values reported here refer to the median value of FFM in the cohort, 45 kg (e.g. a 1.7 m tall man weighing 51 kg)

Abbreviations: F bioavailability, HIV+/HIV- HIV-1-infected/uninfected, IIV Inter-individual variability, IOV inter-occasional variability

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Table 4: Parameter values estimated by the final pharmacokinetic model for pyrazinamide

Parameter Estimated population value (95% CI)

Inter-individual or inter-occasional variability (95% CI), [shrinkage]*

Bioavailability (F) 1 (fixed) IOV: 13.1% (10.2% to 16%), [31%]

Mean transit time (h) 0.74 (0.65 to 0.84) IOV: 54.5% (45.1% to 63.9%), [19%]

Number of absorption transit compartments

2.06 (1.59 to 2.53)

Absorption rate constant (h-1) 50.0 (fixed)***

Volume of distribution (L)** 41.9 (40.4 to 43.4)

Clearance/F (L/h)** 4.17 (3.90 to 4.44) IIV: 29.6% (24.7% to 34.5%), [8%]

Additive error (mg/L) 1.95 (1.77 to 2.13)

Proportional error (%) 10.7 (9.60 to 11.80)

*Inter-individual and –occasional variability was assumed log normally distributed and is reported here as approximate %CV. For

Inter-occasional variability terms, the shrinkage is reported only for the occasion with intensive sampling (not the pre-dose).

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**All clearance and volume parameters have been allometrically scaled using individual values of fat-free mass (FFM), so the

typical values reported here refer to the median value of FFM in the cohort, 45 kg (e.g. a 1.7 m tall man weighing 51 kg)

***The model estimated a very large value of absorption constant, so it was fixed to 50 to stabilise the model without significantly

affecting the fit.

Abbreviations: F bioavailability IIV Inter-individual variability, IOV inter-occasional variability

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Table 5: Risk factors for reported side-effects at 2-month review- univariate and

multivariate model

Variable OR (95% CI) for reported

side-effects

Adjusted OR (95% CI) for

reported side-effects

INH AUC0-24 Quartile 1

INH AUC0-24 Quartile 2

INH AUC0-24 Quartile 3

INH AUC0-24 Quartile 4

1

1.26 (0.34-4.84)

1.88 (0.52-6.84)

7.11 (1.99-25.47)

1

1.19 (0.29-4.87)

2.08 (0.54-8.07)

9.12 (2.28-36.55)

10 year increase in age 1.09 (0.71-1.67) 1.14 (0.68-1.92)

Previous isoniazid

treatment

1.54 (0.67-3.55) 1.76 (0.63-4.97)

HIV-1 serostatus 1.56 (0.64-3.80) 1.12 (0.41-3.08)

Alcohol intake 1.46 (0.63-3.41) 1.92 (0.72-5.16)

Type 2 diabetes mellitus 1.99 (0.26-14.17) 1.67 (0.12-14.28)

Abbreviations: INH isoniazid, AUC0-24 area under the concentration-time profile curve

from 0 to 24 hours.

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Figure 1A: Visual predictive check for rifampicin concentration versus time, stratified

by HIV-1 serostatus and co-administration of Lopinavir/ritonavir (LPV/r)

The blue dots are observed concentrations, while the red dots are simulation-based

values below the limit of quantification (BLQ). Lines are 10th, 50th, and 90th percentile

of observed data, while the shaded areas represent the 90% confidence intervals for

the same percentiles, as predicted by the model.

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Figure 1B: Visual predictive check for isoniazid concentration versus time, stratified

by HIV-1 serostatus

The blue dots are observed concentrations, while the red dots are simulation-based

values below the limit of quantification (BLQ). Lines are 10th, 50th, and 90th percentile

of observed data, while the shaded areas represent the 90% confidence intervals for

the same percentiles, as predicted by the model.

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Figure 1C: Visual predictive check for pyrazinamide concentration versus time

The blue dots are observed concentrations, while the red dots are simulation-based

values below the limit of quantification (BLQ). Lines are 10th, 50th, and 90th percentile

of observed data, while the shaded areas represent the 90% confidence intervals for

the same percentiles, as predicted by the model.

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Figure 2: Pharmacokinetic measures Cmax and AUC0-24 stratified by HIV serostatus

and antiretroviral therapy regimen

The box and whisker plots show model derived PK measures. Cmax and AUC0-24 are

plotted on the left and right y-axes. The boxes show median and interquartile range.

The whiskers represent the 5th to 95th percentiles and illustrate variability in both HIV-

1 infected (+) and HIV-1 uninfected (-) patients and different antiretroviral therapy

categories. Patients on inhibitors appear to have higher rifampicin AUC0-24 compared

with ‘No ART’ and NNRTI based’ categories

The dotted black line indicates current recommended thresholds for Cmax of 3 mg/L,

8 mg/L and 30 mg/L for isoniazid, rifampicin and pyrazinamide respectively.

No tests for statistical significance were run to generate p-values on these post-hoc

individual estimates, as these reported individual values are based on the population

PK models and are hence inter-dependent. Significance of the respective covariate

effects were tested within the model (table 2-4).

Abbreviations: ART antiretroviral therapy, NNRTI non-nucleoside reverse

transcriptase inhibitor, PI protease inhibitor, Cmax maximum concentration, AUC area

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Figure 3: Pharmacokinetic measures Cmax and AUC0-24, respectively stratified by

WHO weight band

The box and whisker plots show model derived PK measures stratified by WHO

weight band. Cmax and AUC0-24 are plotted on the left and right y-axes. The boxes

show median and interquartile range. The whiskers represent the 5th to 95th

percentiles. The predictions include allometric scaling which is necessary to account

for the nonlinear differences by weight/size. This explains differences in PK

measures -in spite of same mg/kg dosing by weight band.

The dotted black line indicates current recommended thresholds for Cmax of 3 mg/L,

8 mg/L and 30 mg/L for isoniazid, rifampicin and pyrazinamide respectively

Abbreviations: Cmax maximum concentration, AUC area under curve from 0 to 24

hours, WB weight band

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Figure 4: Pharmacokinetic measures Cmax and AUC0-24 stratified by side-effect

profile

The upper 3 graphs show Cmax on the left axis and AUC0-24 on the right y-axis,

stratified by presence or absence of drug side-effects. The bottom 3 graphs detail

drug peak concentrations in those with (+) and without (-) CNS, PNS, MS, skin

and GI side-effects

Abbreviations: Cmax peak concentration, AUC 0-24, SE side-effects, CNS central

nervous system, PNS peripheral nervous system, MS musculoskeletal system,

GI gastrointestinal

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