ground state
Feb 23, 2016
Ball and Stick representation. Tyr 42. Glu 46. Arg 52. Chr. Phe 96. Try 98. Pro 68. ground state. early intermediate. late intermediate. WT. Y42F. white light. UV light. Ribbon drawings and Topology Diagrams. Surface representations. Solvent excluded surface “Molecular surface”. - PowerPoint PPT Presentation
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ground state early intermediate late intermediate
Phe 96Chr
Tyr 42
Arg 52
Try 98
Pro 68
Glu 46
Ball and Stick representation
WT Y42F
white light
UV light
Ribbon drawings and Topology Diagrams
Probe Sphere
Solvent excluded surface“Molecular surface”
Solvent accessible surface
Surface representations
The difference between the solvent accessiblesurface and the Van der Waals surface can be substantial
QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
Idealized B-DNA and the crystal structure of a short docecamer
Visualizing surface curvature
QuickTime™ and aTIFF (Uncompressed) decompressor
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Electrostatic Potential Surfaces
Acetyl choline esterase
QuickTime™ and aTIFF (Uncompressed) decompressor
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Acetyl cholineNet positive charge
QuickTime™ and aTIFF (Uncompressed) decompressor
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QuickTime™ and aTIFF (Uncompressed) decompressor
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QuickTime™ and aTIFF (Uncompressed) decompressor
are needed to see this picture.
Analyzing packing efficiency
PROBE written by Richardson Lab
ground state early intermediate late intermediate
Phe 96Chr
Tyr 42
Arg 52
Try 98
Pro 68
Glu 46
Tyr 98
2.8 Å2.1 Å
U11 U12 U13
U21 U22 U23
U31 U32 U33][ 3 Eigenvectors
3 Eigenvalues
From Eigenvalues:shape of the ellipse
i.e. of a normal distribution
From Eigenvectors:orientation of ellipse
in space
50% is at ~ 1.2
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