Gramene V. 21 1 Gramene Diversity Gramene Genetic Diversity database contains SSR and SNP allelic data and passport descriptions for rice, maize and wheat germplasms. It also holds phenotypic data for maize. The ultimate goal is to make this database a source of rice, maize, and wheat bio-information from/for evolutionary, domestication, association, and genetic diversity studies. It also could potentially be useful for applications such as germplasm management, marker assisted selection and DNA-based variety identification.
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Gramene V. 211 Gramene Diversity Gramene Genetic Diversity database contains SSR and SNP allelic data and passport descriptions for rice, maize and wheat.
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Gramene V. 21 1
Gramene DiversityGramene Genetic Diversity database contains SSR and SNP allelic data and passport descriptions for rice, maize and wheat germplasms. It also holds
phenotypic data for maize.
The ultimate goal is to make this database a source of rice, maize, and wheat bio-information from/for
evolutionary, domestication, association, and genetic diversity studies. It also could potentially be useful for applications such as germplasm management, marker
assisted selection and DNA-based variety identification.
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Search by Germplasm
Passport DataAccession data
SynonymsHolding Institute
Stock SourceGermplasm
Taxonomy dtaCollection Data
Collector, LocationExperiment Data
TitleDesign
Polymorphism typeScoring Protocol
ProducerOriginatorCommentsAllele data
Marker and Allele DataAccession #
Accession nameLocus name
GenotypeAll genotypes on a marker/
germplasms
Search by Marker
Literature DB Markers DB
External germplasm DBs
Diversity Data Map
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Tutorial HelpThe hand icon indicates a link that allows you to go to the same page
in your web browser.
If you are viewing this tutorial with Adobe Acrobat Reader, click the "bookmarks" on the left hand side of the Reader for easier navigation.
Action Options are noted in this type of font.
Notes or comments use this style font.
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From either of the search or quick start menus, click on Diversity.
Gramene Home www.gramene.org
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1. Enter germplasm name, accession number or marker name to view allelic data. 2. Select species
Diversity Home: Search (by Germplasm name)
Example searches
Click for database species summaries (see Slide 13)
3. Click “Submit”
optional
General search does NOT search Diversity
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Error messages?
For accession numbers with IRGC
prefix, use quotations : “IRGC
3575“.
For small names (<3 letters/word) with a space, remove the
space : IR36
For small names (<3 letters) double the
name : T1T1
Error message gives hint
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Link(s) to external
databases
Link(s) to germplasm
request form(s)
Links to abstract
Click to view allele data on germplasm(see
Slide 8)
Click to view marker type details
Click to view taxonomic details (See Gramene Ontology
For more complex queries, you can use The Genomic Diversity and Phenotype Connection (GDPC) Browser. Here you can download and get documentation how to use the GDPC Browser.