Be part of the next-generation multi-omics computing revolution Genomics + Proteomics Come Together in the Cloud SWATH ™ Acquisition in the Cloud: OneOmics ™ Project in BaseSpace ® – Christie Hunter, PhD and Brigitte Simons, PhD, SCIEX U.S. HUPO 2015 March 15-18 • Tempe, AZ
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Be part of the next-generation multi-omics computing revolution
Genomics + Proteomics Come Together in the Cloud
SWATH™ Acquisition in the Cloud: OneOmics™ Project in BaseSpace®
– Christie Hunter, PhD and Brigitte Simons, PhD, SCIEX
U.S. HUPO 2015March 15-18 • Tempe, AZ
reference libraries
proteomicsgenomics
BaseSpace®
NEXT-GENSEQUENCINGSWATH™
NEXT-GENPROTEOMICS
SCIEX
user applications
Introducing the OneOmics™ Project with the SCIEX SWATH™ Proteomics Cloud Toolkit
SCIEX and Illumina® have partnered to create an environment where complex multi-omics data integrates easier, executes faster and more securely, and presents results immediately for worldwide collaboration.
With the OneOmics™ Project, highly-reproducible SWATH™ proteomics data output from SCIEX TripleTOF™ systems is processed remotely in Illumina’s BaseSpace® cloud computing environment. Results then integrate with information from next-gen sequencing and user-developed applications within BaseSpace® to provide unprecedented biological insights.
The benefits for proteomicscientists are significant
• Quickly and easily process and store SWATH™-generated mass spec-based proteomics big data sets
• Reduce onsite proteomics IT and related maintenance costs by processing data remotely on high-performance servers
• Share data securely and instantly, worldwide
• Present complex proteomics data in graphical representations that are easily understood by biologists for faster interpretation and greater productivity
SWATH™ Proteomics Cloud Toolkit The only cloud-based, app-enabled solution for integrated multi-omics analysis
Protein Expression ANALYTICSOffers a complete set of analytics that enable data quality analysis
Protein Expression BROWSERProvides a comprehensive set of visualization tools to present results in biological context, including graphical heat maps, starburst blots, box/whiskers and gene ontology
Protein Expression EXTRACTORProcesses SWATH™ data at least 10X faster than typical high-performance workstations – so results are now available in hours, not days
Protein Expression ASSEMBLERExecutes protein fold-change analysis and groups samples, according to biological experiments to determine fold change of protein expression
DATA UPLOADThe CloudConnect plug-in for your PC enables the uploading of SWATH™ data to BaseSpace®
Our toolkit comprises a suite of four applications and a plug-in to upload proteomics data into BaseSpace®
POSTER PRESENTATION AT U.S. HUPO
Integrating Proteomics and Genomics Data in a Cloud EnvironmentChristie Hunter, PhD, Brigitte Simons, PhD,
Randy Arnold, PhD, SCIEX
Getting started is easy
To see a video demo, visit: www.sciex.com/OneOmics
To learn more about the SWATH™ Proteomics Cloud Toolkit applications and cloud computing environment – and to test with preloaded sample data – visit: https://basespace.illumina.com
The integration of proteomic and genomic data analysis
through a partnership with SCIEX and Illumina® is an
exciting collaboration that will bring democratization of
computational efforts, general access and standardization
of data analysis, and provide a platform for systems
biology in life science.
Leroy Hood, M.D., PhD President of Institute for Systems Biology