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Feasibility of 13 CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer Scott R. Saleska 1 , Joanne H. Shorter 2 , Scott Herndon 2 , Rodrigo Jiménez 3 , J. Barry McManus 2 , David D. Nelson 2 , J. William Munger 3 , Mark S. Zahniser 2 Submitted to Isotopes in Environmental and Health Studies (special issue on spectroscopic approaches) 1 Dept. of Ecology and Evolutionary Biology, University of Arizona, Tucson AZ, 85721 USA 2 Aerodyne Research, Inc., 45 Manning Road, Billerica, MA, USA 01821 3 Dept. of Earth and Planetary Sciences and Division of Engineering and Applied Sciences, Harvard University, 20 Oxford Street, Cambridge, MA 02138. 1
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Feasibility of 13CO2 eddy covariance flux measurements ... · Feasibility of 13CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer

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Page 1: Feasibility of 13CO2 eddy covariance flux measurements ... · Feasibility of 13CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer

Feasibility of 13CO2 eddy covariance flux measurements using a pulsed quantum

cascade laser absorption spectrometer

Scott R. Saleska1, Joanne H. Shorter2, Scott Herndon2, Rodrigo Jiménez3, J. Barry

McManus2, David D. Nelson2, J. William Munger3, Mark S. Zahniser2

Submitted to

Isotopes in Environmental and Health Studies

(special issue on spectroscopic approaches)

1 Dept. of Ecology and Evolutionary Biology, University of Arizona, Tucson AZ, 85721 USA 2Aerodyne Research, Inc., 45 Manning Road, Billerica, MA, USA 01821 3 Dept. of Earth and Planetary Sciences and Division of Engineering and Applied Sciences,

Harvard University, 20 Oxford Street, Cambridge, MA 02138.

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Abstract Better quantification of atmosphere-ecosystem exchange of the isotopologues of CO2

could substantially improve our ability to probe underlying physiological and ecological

mechanisms controlling ecosystem carbon exchange, but the ability to make long-term

continuous measurements of the isotopic composition of exchange fluxes has been limited by

measurement difficulties. Quantum cascade (QC) lasers are a new generation of infrared

light sources that offer increased stability and power for absorption spectroscopy

applications, including the measurement of atmospheric CO2 isotope ratios, and promise

substantial improvements over existing instruments: smaller size, increased robustness, and

most significantly for remote or long-term field deployments, no need for cryogenic cooling

of laser or detectors. In this paper, we used simulations to test whether the performance of a

prototype pulsed QC laser-based isotope-ratio absorption spectrometer (and plausible

improvements thereon) is sufficient for making direct eddy covariance measurements of the

isotopic composition of CO2 fluxes above a mid-latitude temperate forest (Harvard Forest, in

central Massachusetts, USA). We found that the simulated isoflux measurement error

associated with the prototype instrument is not more than ~1.5 to 2 times larger than the

irreducible “meteorological” noise inherently associated with turbulent flux measurements

above this ecosystem (daytime measurement error SD of ~60% of flux versus meteorological

noise of 30-40% for instantaneous half-hour fluxes), and that plausible instrument

improvements could increase precision to the point where measurement error is comparable

to or less than the meteorological noise (measurement error SD reduced to ~ 25% of half-

hourly flux; and to ~10% or less of mean 10-day mean hourly flux). This suggests that QCL-

based isotope ratio absorption spectroscopy should be able to approach the precision at which

sensor error is not a limiting factor in measuring CO2 isotope fluxes via eddy covariance.

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1. Introduction Stable isotope ratios of carbon and oxygen in CO2 have long been recognized as a tool

for identifying sources and sinks of atmospheric CO2 and for probing the processes and

mechanisms that together control carbon cycling. In particular, the different isotopic

composition of CO2 in photosynthetic flux (Fphoto) versus respiratory flux (Fresp) may be used

to partition net ecosystem exchange (NEE) of CO2 into these component fluxes, which in

turn would allow analysis of the underlying mechanisms controlling these distinct processes

(Yakir and Wang, 1996). Appropriate isotopic measurements would allow the simultaneous

solution of the pair of equations (1):

Fnet = Fphoto + Fresp (1a)

δnet·Fnet = δphoto·Fphoto + δresp·Fresp (1b)

where Fx is an ecosystem flux component, and δx is the corresponding isotopic composition

of Fx, (the subscript being net for net flux; photo for photosynthetic flux; and resp for

respiratory flux).

This approach can be employed using measurements of isotopic composition of either

the carbon or the oxygen in CO2. Carbon-based partitioning is possible because the carbon

isotopic composition of respiring organic matter often differs slightly from the organic matter

being concurrently photosynthesized (Bowling et al., 1999). Oxygen-based partitioning is

possible because the oxygen isotopic composition of soil water typically differs strongly

from that of leaves (Craig and Gordon 1965; Barnes and Allison, 1988; Flanagan et al.,

1991). Isotopic exchange between these leaf and soil waters and gas-phase CO2 then means

that the air surrounding photosynthesizing leaves will commonly have very different CO2

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isotopic composition (δ18OCO2) than does respired CO2 from soils (Farquhar et al., 1993;

Tans 1998; Stern et al., 1999). Choosing which tracer to use in such a partitioning involves

trade-offs: the end-member pools determining carbon isotopic composition of net CO2 flux

may be directly characterized, but their differences are usually very small. The end-member

water pools controlling the oxygen isotopic composition of net CO2 flux are almost always

very different (potentially leading to easily resolvable differences between flux components),

but the relevant water pools are harder to define (Ogee et al. 2004). Prudent research strategy

requires continuous measurements of isotopic composition of fluxes of both carbon and

oxygen in CO2. It may also be helpful for the CO2 partitioning problem to measure the

isotopic composition of the water flux, since this is related to the end member water pools

which also influence δ18O of CO2 (Lee et al., in press).

Fnet is currently measured via eddy covariance continuously at hundreds of sites

around the world, as part of the FLUXNET project (http://daac.ornl.gov/FLUXNET/), but

measurements of the isoflux (δnet·Fnet) and the end-members δphoto and δresp are more

challenging and so far have been almost entirely limited to one-day experiments (Yakir and

Wang, 1996; Ogee et al., 2003, 2004), multi-day but limited field campaigns (Flanagan et al.

1997) or long-term but sparse sampling (Bowling et al., 2001; Lai et al, 2003, 2004). Wider

usage of stable isotopes in ecosystem exchange studies has been impeded by the

complication that existing instrumentation using isotope ratio mass spectrometry (IRMS) –

the standard method for determining trace gas stable isotope ratios for many applications

other than measuring eddy covariance fluxes – requires samples to be collected in flasks and

returned to the laboratory for analysis, a tedious method for measurements that we would like

to make continuously. Although recent advances in automated sample collection systems

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(Flanagan, et al. 1997; Bowling, et al. 1999; Bowling, et al. 2001; Mortazavi and Chanton

2002; Lai, et al. 2003; Torn, et al. 2003) make IRMS-based applications less cumbersome,

tunable infrared laser differential absorption (TILDAS), a broad class of instrumentation

which includes tunable diode laser absorption spectroscopy, TDLAS, which has been applied

to eddy covariance flux measurements of such trace gases as CH4, N2O, and NO2 (Zahniser

et al., 1995; Fowler et al., 1995; Horii et al., 1999; Werle et al., 2001; Kormann et al., 2001),

promises simple in situ isotope measurements at high-frequency that IRMS will never match

for eddy covariance applications.

Recently, conventional lead-salt tunable diode lasers have been adapted to

atmospheric isotope ratio measurements in concentrations of CO2 and H2O vapor,

demonstrating the potential and power of technology that can make continuous in situ

measurements (Becker et al. 1992; Kerstel et al.,1999; Bowling et al., 2003; Griffis et al.,

2004; Castrillo et al., 2005; Lee et al., in press). However, these instruments have not yet

been employed in measuring eddy covariance fluxes because the need for frequent drift-

correcting calibrations complicates the flux calculations that need to be integrated for as

much as 30 min (at least in forest ecosystems). Concentration measurements are sufficient

for obtaining gradients and hence estimating fluxes over low-stature ecosystems with

aerodynamically smooth vegetation cover such as grasslands and agricultural fields (e.g.,

Griffis et al., 2004 calculated isotopic fluxes from gradients measured over a soybean field

using lead-salt laser technology), but for fluxes over tall vegetation ecosystems such as

forests, this approach is logistically difficult because it would require concentration

measurements well above the roughness sublayer, typically at an infeasibly high altitude for

most tower-based measuring platforms. Hence, in forest ecosystems, the eddy covariance

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method is preferable. In addition, lead-salt technology is cumbersome and requires

cryogenic cooling of the laser source. These characteristics make such technology less than

ideal for taking full advantage of the principle strength of the eddy covariance method as a

research tool, which is the ability to integrate continuous fluxes over extended time periods

in remote field sites (Barford et al., 2001; Saleska et al., 2003).

A new generation of laser light sources, quantum cascade (QC) lasers, can provide

alternative sources of mid-infrared radiation that can overcome some of the difficulties

associated with lead-salt diode lasers by providing near room temperature operation, and

increased power output. Since QC lasers were first demonstrated (Faist et al., 1994), they

have undergone rapid development and can now provide the combination of high precision,

long-term stability, and low temperature sensitivity that is needed for good-quality eddy

covariance measurements at remote field sites (Nelson et al., 2004; Jimenez et al., 2005).

When operated in pulsed mode, quantum cascade lasers overcome the limitations of lead-salt

lasers by operating with single mode at near-room temperature and with highly stable mode

output. In particular, the power levels are substantially higher than even the best lead-salt

lasers, allowing the use of thermoelectrically cooled infrared detectors for a totally cryogen-

free operation (Nelson et al., 2004), a significant advantage for field deployment.

In this paper, we test whether the performance characteristics of an existing prototype

QC laser-based isotope-ratio TILDAS (and plausible improvements thereon) are sufficient

for making scientifically useful direct eddy covariance measurements of the isotopic

composition of fluxes above a forest ecosystem. First, we briefly describe the design of the

prototype instrument (full details are provided elsewhere (McManus et al., 2005)), and

present data characterizing instrument performance in the laboratory in measuring 13C/12C

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isotope ratios in CO2 at ambient concentrations. We also characterize the improved

performance levels that we expect to achieve in a planned field-deployable isotope ratio

instrument, based on current performance of a similar instrument already developed for

ambient 12CO2 concentration measurements from airborne platforms.

Second, we discuss the technical requirements for making eddy covariance

measurements of the isotopic composition of net ecosystem exchange of between forest

ecosystems and the atmosphere, and propose a specific criterion for judging whether a

sensor’s performance is sufficient to achieve the kind of science goals typically pursued by

eddy covariance measurements of net ecosystem exchange.

Finally, we test whether the performance level of our QC-TILDAS isotope-ratio

sensor (in both prototype and target development forms) meets the proposed criteria. We do

this by: (a) simulating the 13C/12C-CO2 isoflux above a real forest ecosystem (Harvard

Forest, in central Massachusetts) from existing CO2 eddy covariance measurements and from

isotope data derived from flasks (giving a result that for the purposes of sensor evaluation we

treat as “true”), (b) sampling from this simulation after adding “measurement error” (where

characteristics of the error term are derived from laboratory tests of the sensor) and

recalculating the isoflux (giving an estimate of the isoflux that would be “measured” by the

proposed sensor), and finally, (c) comparing how closely the “measured” isoflux approaches

the “true” (simulated) isoflux in light of the proposed criteria.

2. Instrument and Methods

2.1. QCL spectrometer 2.1.1. Prototype instrument

The design principles and construction details for our prototype QCL spectrometer

are discussed in full in McManus et al.[submitted], but we briefly review them here. The

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instrument (see schematic, Figure 1) combines a commercially available QC-laser (ALPES

Lasers, www.alpeslasers.com) operated in pulse mode, an optical system, and a computer-

controlled system that incorporates the electronics for driving the QC-laser along with signal

generation and data acquisition. The spectrometer is devised for simultaneous measurement

of absorption (sample), pulse normalization (reference) and frequency-lock spectra from the

QC-laser. The laser used here can be tuned to the infrared frequencies between 2310 cm-1

and 2315 cm-1. Based on a suite of selection criteria discussed in McManus et al., (2002;

2005), we used a pair of CO2 absorption lines near 2311 cm-1 (2311.399 cm-1 for 13CO2 and

2311.105 cm-1 for 12CO2), as suggested by Weidmann et al., (2004).

A key feature of the design of the optical system is a dual-path multi-pass cell which

compensates for the large (factor of 100) difference in concentration between major and minor

isotopologues of CO2. Our approach, previously implemented with a conventional lead-salt

diode laser McManus et al., (2002), uses path lengths that differ by a factor of 74, implemented

with a multi-pass astigmatic Herriott cell (base length 0.32 m) in which the different path lengths

(0.753 m and 56.08 m) are defined by the number of cell passes (either 2 or 174). This approach

overcomes a significant problem in the spectroscopic measurement of isotopic abundances since

the measurement of two isotopic species using lines of similar strength but very unequal

concentrations leads to low accuracy, with either the minor constituent having too small an

absorption depth, or the major constituent having too great an absorption depth. If lines with

unequal strength are chosen to compensate for the absorption depth imbalance, then accuracy

tends to suffer due to the greater temperature sensitivity of the weaker strength line. Here, the

dual path approach greatly lessens the effect of temperature variations in the instrument

environment; the temperature stability requirement is virtually negligible (180 K / 0.1 ‰) using

the chosen line pairs at 2311 cm-1.

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Two data acquisition cards simultaneously measured both species using two InSb

photovoltaic detectors. The detectors were LN2 cooled in this prototype unit. The laser was

scanned over a 0.5 cm-1 range at 4 kHz. Spectra were co-averaged in real time and fit with our

TDLWINTEL (Nelson et al., 2002; 2004) data acquisition software to retrieve continuous mixing

ratios of both isotopologues. Although fitting rates of 20 Hz can be obtained, the preliminary

data here are reported at 10 Hz. A spectral pair is shown in Figure 2.

Absolute spectroscopic mixing ratios are calculated using the HITRAN data base

parameters (Rothman et al. 2003), the measured pressure, temperature, path lengths and the laser

line width. The laser line width is convolved with the molecular absorbance model during the

fitting to account for non-linear effects at higher optical depths. The isotopologue line strengths

in HITRAN are scaled by their nominal natural abundances. For 13CO2 this scaling factor is

0.01124, the ratio of the Pee Dee Belemnite (PDB) international standard. Directly retrieved

mixing ratios are typically within ~5% of true values even with no rescaling or calibration (e.g.

Figure 2 shows 345 ppm for 12CO2 and 333 ppm for 13CO2/01124 compared to known value of

350 ppm in reference air). However, high-accuracy applications like those proposed here would

require routine calibration for both isotopologues to account for residual uncertainties in the laser

line shape and absorption baseline.

2.1.2. Prototype performance We assessed instrument precision by alternatively sampling gases at 1 Hz from Mylar

bags prepared from two sources: an ultra zero air tank containing 350 ppm total 12CO2 and

unknown δ13C (“sample”) and a “reference” mixture of CO2 with δ13CPDB = -49.4 ‰.

Reference air was made by diluting gas from a tank of pure CO2 (δ13CPDB = -49.4 ‰ as

determined by mass spectrometry in the laboratory of Prof. Dan Schrag at Harvard

University) with dry N2 in an airtight Mylar bag to match sample gas [12CO2] of ~350ppm

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and the same δ13CPDB as the reference tank (-49.4 ‰). The reference tank was presumably

prepared from combustion of CH4 which is light in 13C relative to atmospheric CO2.

This assessment (Figure 3) shows that the difference between sample and reference is

obtainable with a precision of 0.1‰ (2σ standard error of mean of 11 samples) in 10 minutes

of analysis time. The SD, 0.18 ‰ with 30 s measurement time shows that this prototype

instrument already approaches the best reported literature values using lead-salt TDLs

(Bowling et al. 2003).

We evaluated the long term stability of the prototype QCL using the Allan variance

technique (Allan 1966; Werle et al., 1993) which distinguishes high frequency random

variations in the measurement from systematic variations at longer time scales. To

summarize briefly, on a log-log plot in which the variance of repeated measurements of a

sample with fixed concentration or isotope ratio is plotted against the averaging time t over

which each of those repeated measurements is averaged (called an Allan plot), the variance

will generally decrease with time if the measurement error is random, because integrating

over longer times will average away random fluctuations. If measurement error is a pure

random white noise (with power spectrum that is a constant independent of frequency), the

variance (σ2) will decrease with t-1 (σ decreases as t-1/2), and a log-log plot of variance versus

integration time would be expected to have a slope of -1. If measurement errors are random

but correlated, then the measurement variance will still decrease, but not as rapidly (in

particular, in the case of so called “pink noise,” which has a power spectrum ~ 1/f 0.5, where f

is frequency, the variance falls with a slope of -1/2). If there are systematic drifts at longer

timescales due to temperature, optical instability, or laser instability, then repeated

measurements averaged at those time-scales or longer will be systematically different from

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each other (because of the drift) and hence have larger and larger variances. The integration

time (called τallan) at which the minimum variance occurs (called σ2allan) characterizes

instrument stability and defines a time-scale that divides the time domain into a region in

which random noise fluctuations can be averaged over (t < τallan) and a region (t > τallan) in

which systematic drift dominates. Measurement errors due to systematic drifts should be

corrected by periodic external calibrations using reference gas with known concentration and

isotope ratio, with τallan useful in choosing an optimal calibration frequency for maintaining

long-term precision.

A 10 Hz time series and Allan plot of the 13CO2/12CO2 ratio are shown in Figure 4 for

a 4 hour period with ambient air sealed in the sampling cell at 7 Torr. The time series of the

13CO2/12CO2 ratio has a 0.1 s rms of 1‰ which ideally would decrease to 0.1‰ after 10 s if

measurement error were random white noise. However, the measurement error behaves like

a process intermediate between white noise and 1/f 0.5 “pink” noise, indicating that that there

are some correlations in noise sources at time scales of 0.1-100 sec (Figure 4). The variance

has a broad minimum between at 200 and 800 seconds with a minimum corresponding to

σAllan = 0.11‰. There is a greater proportional decrease from 1 s to 200 s for the isotope

ratio than for either of the isotopologues measured separately (not shown), indicating that

some of the contributing noise sources such as laser line width variation and peak position

stability are correlated and cancel when the ratio is taken.

2.1.3. Development target instrument Figure 3 and Figure 4 together characterize the performance of our prototype isotope

ratio QCL spectrometer. We believe that further modifications to instrument design can

improve on this performance, and we describe here the characteristics of a “development

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target” instrument incorporating these improvements. In particular, we note that the existing

prototype design has no reference cell. The addition of reference cells (one paired with each

path in the sample cell) with column densities roughly equal to that in the corresponding sample

path should increase measurement stability and precision. This is because the largest sources of

noise in the 1 to 100 second time scales are residual laser frequency fluctuations affecting both

the peak position and the laser line width. Since the magnitude of these uncertainties will scale

directly with the absorption area, reducing the absorption area by dividing the sample cell

spectrum by a reference spectrum obtained from an equal column density reference cell will

increase measurement precision.

This technique of reference cell normalization has been employed before in

absorption instrumentation (e.g. the widely used Licor CO2 infrared gas analyzer, though not

a spectroscopic instrument, achieves high precision with matched sample and reference cells,

and the same principle is used in a commercially-available isotope–ratio spectrometer using

conventional lead-salt technology, Bowling et al, 2003; Griffis et al., 2004). We have

already implemented this technique in the context of QCL technology with a high-precision

12CO2 QCL sensor currently under development at ARI for deployment on aircraft (Jimenez

et al, in prep). This sensor measures only the 12CO2 isotopologue, but the technology is

otherwise similar to the prototype isotope ratio instrument discussed above.

The 12CO2 aircraft sensor operates in difference mode using two matched 10 cm cells

(one for sample air and one for a known reference) and dividing sample spectrum by

reference spectrum before fitting. We plan in future work to apply the same technique to the

isotope ratio spectrometer, by adding two 10 cm path cells – one flushed with 0.2% CO2

reference gas (to balance the short path), and one flushed with 20% CO2 reference gas (to

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balance the long path). Balancing the absorption before spectral fitting will minimize

sensitivity to laser linewidth changes and frequency stability in the lasers. For the purposes

of this paper, we quantify the effects of planned improvements in order to simulate their

effects on measured eddy covariance fluxes.

2.1.4. Development target performance We quantify the improvement expected from this potential modification by

considering the performance of the existing 12CO2 QCL sensor (Jimenez et al, in prep). As

discussed above, this sensor is designed to measure absolute 12CO2 concentrations only, not

isotope ratios, but the technique of reference cell normalization should have comparable

stabilizing effects on 13CO2 isotopologue. Thus, the characteristics of the existing 12CO2

QCL instrument allow us to conservatively define the expected performance of a

“development target” isotope ratio spectrometer.

The Allan plot for this sensor (Figure 5) shows a lower 1-sec rms noise (100 ppb

CO2, or about 0.3‰ of ambient), a more rapid initial decrease (along the t-1 line between 1 to

30 seconds) and a greater long-term stability (the minimum approached at 200 seconds

remains virtually flat to ~1500 secs) than in the prototype isotope ratio spectrometer (Figure

4). The minimum corresponds to a precision of 20 ppb or 0.05‰ of ambient CO2. Such an

instrument should allow us to obtain an rms precision on isotope ratios of 0.1‰ with 10 s

averaging time, and to push calibration intervals to 1500 s (25 min).

A summary of relevant specifications and performance characteristics in the

prototype and development target spectrometers (compared to the most closely related

commercially available alternative) is in Table I.

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2.2. Requirements for Eddy covariance measurements Eddy covariance measurements of net ecosystem exchange (NEE) of CO2 (in μmoles

m-2 s-1) are typically calculated as (Goulden et al, 1996):

∫+′=h

dzzCOdtdCOwNEE

0 22 )]([]'[ ρρ (2)

where ρ is molar density of air (moles m-3), ]'[ 2COw′ (in ppm m s-1) is the w-CO2 covariance

(w being vertical wind in m/s and [CO2] being molar concentration of carbon dioxide), and

the second term on the right is the storage flux, the change in the CO2 column stored in the

canopy air. The primes in the covariance term derive from Reynolds decomposition, by

which a series xt is written (for some time period) as txx '+ , where x’t are the fluctuations

from the mean value across the time period. CO2 is carried when CO2 fluctuations in one

direction are consistently associated with fluctuations in vertical wind (e.g. during nighttime

efflux, vertical wind and CO2 are positively correlated). The storage flux can be especially

important in tall vegetation such as forests when attempting to measure the hour-by-hour flux

without bias. However, the purpose of this paper is to assess the suitability of a sensor to

measure covariances (not to estimate net ecosystem exchange), so we neglect consideration

of a storage flux term in what follows.

The isotopic composition of the eddy covariance flux of CO2, called the isoflux, is

defined, for the carbon isotopic composition, as ])'[( 213 COCw ⋅′ δρ (units: μmoles CO2 m-2 s-

1 ‰) (Bowling et al., 2001), and can be thought of as the product of CO2 flux and its isotopic

composition (expressed in δ units). For simplicity in what follows, we neglect the effect of

molar air density ρ, and report raw covariances (ppm m s-1 for CO2 flux, and ppm m s-1 ‰ for

isoflux).

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Eddy covariance measurements impose strong technical requirements on sensor

technology, including: (1) rapid response time (less than one second, sufficient to

characterize the high-frequency transport flux); (2) long-term stability (sufficient to integrate

continuous measurements for 20-30 minutes without drift), and (3) high precision and

resolution (so that the small fluctuations that constitute the eddy flux signal can be

quantified). Here we analyze the ability of the prototype and development target instruments

to meet these requirements, using the conditions at Harvard Forest in central Massachusetts.

Long-term eddy covariance fluxes at Harvard Forest have typically been acquired at 5

or 10 Hz, but spectral analysis of these data show that 2 Hz sampling is adequate to capture

most high-frequency fluctuations (Goulden et al., 1996). Since laser absorption spectroscopy

systems routinely acquire data at 10 Hz or more, sensor response time is not a technical

hurdle here. Response time in the proposed instrument will be limited as much by flow rates

and cell-flushing time as by the speed with which spectra can be acquired, and in any case a

sampling rate of 2 Hz or better is not an issue.

Difficulty in achieving sufficient long-term stability has been a limiting factor in lead-

salt tunable-diode lasers, but the inherent stability of the QC lasers when drift corrected by

matched sample and reference cells (as illustrated by the performance of the 12CO2 QCL

sensor, Figure 5, above) shows that past 200 secs integrating time, the Allan variance for this

sensor is flat for integrating times out to at least 1200-1500 sec (20-25 minutes). We

anticipate similar performance in the isotope ratio QC laser system, which would allow for

uninterrupted eddy covariance integration. Calibrations would be interspersed between each

separate eddy covariance integration, to ensure long-term stability in isotopic measurements.

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The need for precise high-resolution measurements poses a technical challenge for

eddy covariance measurements of isotope ratios, because it is crucial that the differences in

atmospheric concentration between updrafts and downdrafts be adequately resolved. To

quantify the required sensor resolution, we simulated measurements of 13C/12C-CO2 isofluxes

from Harvard Forest using existing CO2 eddy covariance measurements and isotope data

derived from flasks (simulation methods are described in the next section), and then

formulated an objective criterion to judge whether measurement performance was sufficient

to achieve the kind of science goals typically pursued by eddy covariance measurements of

net ecosystem exchange.

The criterion asks: is the error attributable to the measurement comparable to or less

than the inherent meteorological noise associated with turbulence flux measurements? If this

criterion is satisfied, it means that the instrument is as good as it needs to be to achieve flux

measurements of maximum resolution in a given ecosystem, since further reductions in

sensor measurement error cannot give improvements in flux resolution because such

improvements are limited by the irreducible noise of turbulent fluxes.

2.3. Simulation methods 2.3.1. Simulating Isoflux and associated measurement error

First, we simulate the 13C/12C-CO2 isoflux above a real forest ecosystem (Harvard

Forest, in central Massachusetts) from existing CO2 eddy covariance measurements and from

isotope data derived from flasks. Net Ecosystem exchange of CO2 (NEE) has been

measured by eddy covariance at Harvard Forest since 1991, and the site, measurement

methods and analysis are described in detail in other publications (e.g. Goulden et al., 1996;

Barford et al., 2001). Periodic measurements of the concentration and isotopic composition

of atmospheric CO2 at Harvard Forest are reported in Lai et al. (2004), and exhibit a well-

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defined relation, in which δ13C is proportional to 1/[CO2] (Figure 6A), known as a Keeling

plot relation. From the long-term eddy flux dataset and the δ13C vs. CO2 relation, we

simulate the high-frequency carbon isotope ratio time series (δ13Csim) and from this calculate

the half-hourly isoflux ( <w’ ·(δ13Csim ·[CO2])’>) (Figure 6), following a method used by

Ogee et al. (2003), and similar to an approach first used by Bowling et al. (1999), who used a

regression linear in [CO2] rather than in 1/[CO2]. For the purposes of sensor evaluation we

treat this simulated isoflux as “true”.

Next, in order to quantify the effect of sensor error, we simulate the measured isoflux

by adding measurement error to the “true” (simulated) δ13Csim time series:

δ13Cmeasured(t) = δ13Csim(t) + ε(t) (2)

and then recalculating the isoflux as <w’ ·(δ13Cmeasured ·[CO2])’>. We use four different error

time series for ε(t): εprot(t), the actual prototype instrument error (the ratio time series in

Figure 4A); εdevelop(t), the error associated with the “development target” instrument (derived

from the time series in Figure 5); εpink(t), a random “pink noise” time series generated by

inverse-Fourier transforming a white noise power spectrum scaled by density 1/f 0.5 into the

time domain; and εwhite(t), a random white noise process. The simulated noise series’ εpink(t)

and εwhite(t) were used in sensitivity analysis to explore the effect of varying magnitudes of 1

second rms noise on the isoflux measurement error.

To generate each half-hourly prototype error series, we first simulated the effect of a

20 second calibration every half-hour by taking the deviations of the ratio time series in

Figure 4A from a piecewise straight-line interpolation through the endpoints of each half-

hour (where each endpoint was the mean of the ratio series over 20 s). Each half-hourly

17

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εprot(t) was then set equal to a contiguous half-hour subset of the full 10-hour “calibrated”

time series by randomly selecting a starting point.

The “development target” error series εdevelop(t) was generated in a similar manner:

first, the ΔCO2(t) time series in Figure 5 was transformed to approximate an isotopologue

ratio series:

εdevelop(t)(raw) = √2 ·[ΔCO2(t)- <ΔCO2(t)>]/[CO2(sample)] (3)

where [CO2(sample)] is the CO2 concentration in the reference tank (close to ambient, ~375

ppm). εdevelop(t)(raw) is expressed as per mil deviation from the mean, relative to the

concentration being measured; it is inflated by √2 to account for effect of ratioing with a

hypothetical independent 13CO2 series with similar noise characteristics; εdevelop(t)(raw) has

mean zero and standard deviation 0.42‰ (= 1-sec rms noise). We believe this error series to

be a conservative estimate of the likely performance of a dual reference cell 13CO2/12CO2

QCL spectrometer, because it assumes that errors on the two isotopologues series are

independent (hence the √2 inflation of the actually measured series in Figure 5). By contrast,

the ratio time series from the prototype sensor exhibits significantly improved noise

characteristics relative to the individual time series, apparently due to canceling of correlated

errors, but this effect may be smaller in a development target sensor because each individual

series will already be the ratio of sample and reference cells. Finally εdevelop(t) is derived by

“calibrating” εdevelop(t)(raw) according to the same method described above for εprot(t).

We note that in practice, “calibrating” the noise time series in this way had very little

effect on the uncertainty of the calculated isoflux; the main reason for calibration in context

18

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is to maintain long-term accuracy and prevent bias from creeping in to a longer time series of

half-hourly isofluxes.

The magnitude of simulated isoflux measurement error was quantified using the

“bootstrap” technique, i.e. by repeating the isoflux re-calculation for each of 100 bootstrap

resamples on each half hour and taking the standard deviation of the 100 bootstrapped

isofluxes, where each resample was generated with an independent realization of the

appropriate error time series.

2.3.2 Partitioning Isoflux variation: measurement error vs. sample variation We compared the magnitude of half-hourly sensor-induced measurement error, using

the standard of criterion one, to the magnitude of “meteorological” noise. We quantified

meteorological noise as the standard deviation of the “true” isoflux (i.e. without measurement

noise) across different half-hours with similar environmental driving variables

(photosynthetically active radiation, PAR), where “representative” half hours were taken

from within a given day (within 1 hour on either side) and from nearby measurement days

(within 5 days on either side).

In addition to simulating half-hourly isoflux measurements on a given day, we also

calculated 10-day hourly diurnal patterns of isoflux, a common approach to characterizing

ecosystem properties using noisy eddy covariance data (Wilson et al., 2003) that facilitates

analysis of how mean flux patterns respond to changes in mean diurnal patterns of driving

variables such as moisture, temperature and sunlight. We analyzed the overall variability in

simulated measured hourly means across the 10-day averaging period by partitioning the

total variability into two components: sample variation (the variation in “true” isoflux for a

given hour across the 10 measurement days due to day-day variations in environmental

19

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conditions and turbulent noise) and measurement error (the uncertainty on flux for a given

single hour, quantified as the variation across 100 bootstrap re-“measurements” of that hour

generated according to the method of the previous section). For each hour of the day, total

variance on that hour can be partitioned as follows:

( ) ( )

( )22

22

2

j

22

jd,

2Tot

11

1 )( 1

daymeas

n

dd

day

n

dmeas

day

d

n

dboot

n

d

n

dd,jbootday

d,jbootday

d

dayday

d

dayday boot

FFnn

FFnFFnn

FFnn

σσ

σ

σ

+=

−+=

⎥⎦

⎤⎢⎣

⎡−+−=−≈

∑∑

∑∑∑∑

(4)

where Fd,j is the jth bootstrap isoflux for that hour on day d, dF is the mean flux for that hour

on day d (across all bootstrap resamples), and F is the grand mean flux for that hour (across

all days and bootstrap resamples); nday is the number of days (10), nboot is number of

bootstrap samples for each hour (100); and we have used the definitions

(∑ −=dayn

dd

dayday FF

n22 1σ ) (sample variance across days) and ( )∑ −=

bottn

jdjd

bootdmeas FF

n2

,2

)(1σ

(measurement variance on day d).

In this way, the standard error for each hour, SETot (= dayTot nσ ) is partitioned into

SEsample (= dayday nσ ), and SEmeas (= daydmeas n)(σ ).

3. Results and Discussion The measured eddy covariance CO2 flux and the corresponding simulated half-hourly

isoflux (Figure 7) show that: (1) the error noise structure associated with the existing

prototype instrument (Figure 4A) can generate a time series of half-hour flux measurements

(Figure 7) that is unbiased (Figure 8A) but which has an isoflux uncertainty per daytime

20

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half-hour that is somewhat greater than the irreducible “meteorological” noise inherently

associated with turbulent fluxes (Figure 8B); but that (2) the “development target” for the

isotope ratio QCL sensor (to achieve the performance already demonstrated with the 12CO2

QCL sensor, Figure 5) would enable isoflux measurements that approach the best precision

that can be achieved given the inherent uncertainty introduced by atmospheric turbulence

(Figure 8B). Prototype coefficient of variation (CV, the ratio of standard deviation to the

mean value) falls close to that produced by a pink noise with the same 1-sec rms, while

development target characteristics fall in between white and pink noise.

Note that the uncertainty on the integrated half-hour eddy covariance depends not on

the ability to resolve each high-frequency data point separately, but on the uncertainty

associated with δ13C (or whatever atmospheric scalar that is being measured) averaged over

the full integration period. More precisely, it is the quantity S<w’δ’> (the uncertainty on the

half-hour covariance <w’δ’>, where w’ and δ’ are vertical wind and isotope ratio

fluctuations, and <> indicates averaging) that must be sufficiently small. In the absence of

correlated measurement errors between w’ and δ’ (which must be absent for the eddy flux

measurement method to work at all), S<w’δ’> = <w’> S<δ’> + <δ’> S<w’> + S<w’>S<δ’> =

S<w’>S<δ’> (where S<x> is the standard error of the mean of quantity x averaged over the

integration period; terms like <x’> = 0 by definition of the Reynolds decomposition).

The simulation demonstrates this: development target performance is a 1-sec rms

noise of 0.4‰, which is approximately equal to the whole range of isotope data in Figure 6C;

clearly no individual high-frequency points could be resolved with this precision. But the

reduction in noise from averaging up to the half hour level can improve effective precision

21

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substantially, in the ideal case of pure random white noise, by a factor of sqrt(1800) = 42; in

the case of random pink noise, by a factor of 18001/4 = 6.51.

The real strength of eddy covariance measurements (and the adequacy of the

performance of the QCL instrument for such measurements) becomes apparent when

measurements accumulated overall several days are averaged to produce a tightly constrained

mean diurnal curve (simulated for Harvard Forest isofluxes as measured by prototype-quality

or development-target quality instruments, in Figure 9). A dataset of many days or weeks at

a time (difficult or impossible to collect with flasks on an ongoing basis) would allow direct

observation of how such constrained flux patterns respond to variations in driving variables

such as moisture, temperature and sunlight.

In both the individual half-hourly time series (Figure 8B) and in the more relevant

aggregated 10-day diurnal cycle (Figure 9), the portion of the measurement error attributable

to instrument noise characteristics is comparable to the inherent meteorological noise

associated with turbulent fluxes. This suggests that according to the criterion comparing

measurement error to variation associated with turbulent fluxes, the performance of the QCL

isotope ratio spectrometer (in particular, the characteristics of the development target

instrument) is adequate to measure isofluxes at Harvard Forest about as well as they can be

expected to be measured.

Although in this paper we have focused on measuring the 13C/12C ratios of CO2 and

associated isofluxes, we note that the same laser can be tuned to absorption lines for

measuring the oxygen isotopic composition of CO2 as well, with precision expected to be

similar to that obtained for the carbon isotopes. Thus we expect that a field-deployable

version of the prototype discussed here could be used equally well to measure the oxygen

22

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isofluxes of CO2. Indeed, with a dual laser configuration like that outlined in Jimenez et al.,

(2005), simultaneous high-accuracy measurement of both carbon and oxygen isotope ratios

of CO2 in the same sample cell should be possible.

The scientific benefit from the capacity to make continuous high-frequency δ18OCO2

measurements and associated isofluxes may well be greater than that from the carbon

isotopes, for at least two reasons. First, unlike 13CO2 (which because of its typically very

tightly constrained relation with CO2 – e.g. Figure 6A – is straightforward to estimate by

combining eddy flux with flask measurements, just as we have done here to simulate carbon

isofluxes), there is virtually no other approach for measuring C18OO isoflux above forest

ecosystems except for hyperbolic relaxed eddy accumulation (HREA), which adds additional

technical complexity to the labor-intensive processing of many flask samples (Bowling et al.,

1999). Second, as recently shown in an analysis by Ogée et al. (2004), the long-run potential

for effective partitioning of ecosystem CO2 fluxes is likely much greater using oxygen

isotopes of CO2 because the isotopic disequilibrium is between Fphoto and Fresp in equation 1

is almost an order of magnitude larger (~12 – 17 ‰) for oxygen than for carbon (~2‰). The

limiting factor in using oxygen isotopes for partitioning has been the difficulty in obtaining

more accurate δ18OCO2 isofluxes. Thus, our preliminary experiments with measuring carbon

isotope ratios in CO2 using QCL absorption spectroscopy suggests that this technology shows

high potential for oxygen isotopes of CO2, and hence for making significant scientific

progress on the CO2 flux partitioning problem.

4. Conclusions A pulsed-quantum cascade laser spectrometer operating in the mid-infrared spectral

region at 2311 cm-1 has sufficient resolution and stability to measure δ13C of atmospheric

23

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CO2 with the speed and precision needed to enable the calculation of continuous isofluxes by

eddy covariance methods. The sensor measurement error in the prototype instrument tested

here is slightly larger than the irreducible “meteorological” noise inherently associated with

turbulent flux measurements above the Harvard Forest ecosystem, but plausible instrument

improvements (especially the addition of matched reference cells) can be expected, based on

the high performance of an existing 12CO2 sensor in which such improvements have already

been incorporated, to increase precision to the point where measurement error is less than

this meteorological noise. This suggests that QCL-based isotope ratio absorption

spectroscopy should be able to approach the precision at which sensor error is not a limiting

factor in making eddy covariance measurements of the isotopic composition of CO2 fluxes.

The key advantages offered by a field-deployable version of this instrument are: (1)

the ability to operate continuously with no need for cryogenic cooling (a significant

advantage for deployment in remote field sites); (2) increased temperature stability of the

isotopologue line-pairs, reducing the need for precise instrumental temperature control; and

(3) increased signal stability, reducing the frequency of calibration required to maintain high

precision to once every 25-30 minutes. This last advantage would make such an instrument

particularly suitable for eddy covariance applications above tall vegetation, where the

covariance needs to be integrated for periods of up to 30 minutes to capture the full spectrum

of flux transport.

The performance of this technology in measuring carbon isotope ratios of CO2

suggests that CO2 oxygen isotope ratios and associated isofluxes may also be measured.

Since oxygen isotopes may present better opportunities than carbon for partitioning net

ecosystem fluxes of CO2 into its photosynthetic and respiratory components, and a significant

24

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limiting factor in oxygen-based CO2 flux partitioning is the difficulty in accurately measuring

isoflux, further development of the QCL-based absorption spectroscopy technology discussed

here should present significant opportunities for making progress on the CO2 flux-

partitioning problem.

25

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Tables

Table I. Instrument characteristics of: demonstrated lab prototype, conservatively-estimated development target, and the most closely related commercially available alternative. Key planned development modifications to improve performance of the prototype are shaded in gray, and key advantages for field deployment and eddy-covariance measurements, relative to the current state-of-the-art, are shaded in blue.

Lab Prototype (a)

Field-deployable de-velopment target (b)

Reference: current commercial state-of-the-

art (c)

Laser light source Laser type Pulsed QC infrared laser

continuous-wave lead-salt diode

Tuning range 2310 – 2315 cm-1 Absorption lines 13CO2: 2314 cm-1 or 2311 cm-1 2308cm-1 temperature stability re-quired for above line

(0.2 K) or (180K) per 0.1‰ ( 0.006K ) / 0.1‰

Scan rate 4 kHz 0.5 kHz simultaneous dual laser mode operation

No yes No

Optical Cell Laser path length Dual paths: 0.74 m and 56m 1.5 m Matched Reference cell None Dual Yes

Measurement Performance 1 sec rms noise 0.5‰ 0.4‰ 0.4‰ 10-sec 1-σ precision 0.2‰ 0.1‰ 0.1‰ Allan σ minimum 0.1‰ 0.05‰ 0.1‰

~ 200-800 s 200 to 1500+ s (flat) 30 s Stability, as indicated by time to Allen σ2 minimum (provides an indicator of time interval between calibrations) response time 0.1 sec or faster 0.1 sec

Physical specifications & design features cooling of laser Thermoelectric (TE) TE LN2

cooling of detector LN2 TE LN2

Weight (incl. electronics) 75 kg 75 kg Analyzer unit dimensions 0.65m x 0.40m 2.1 m x 0.55 m Notes: (a) Prototype performance assessed from data in Figure 4. (b) Development target characteristics are conservatively estimated based on demonstrated performance (see Figure 5) of a similarly designed Aerodyne QC-TILDAS sensor for aircraft-based CO2 concentration measurements (currently under development). (c) TDA-100, Campbell Scientific (Logan, Utah). Based on information in Bowling et al. (2003).

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Figures Figure 1. Schematic for prototype isotope ratio QCL absorption spectrometer.

Figure 2. CO2 isotopologue spectra with pulsed QC laser as recorded by TDL-WINTEL software. The cell contains 350 ppm CO2 in air at a total pressure of 7 Torr. The laser line width is 0.01 cm-1 hwhm.

Figure 3. Prototype isotope ratio QCL absorption spectrometer measurements of 13CO2 and 12CO2, alternating between sample air ([CO2] = 350 ppm, δ13CPDB unknown) and reference air ([CO2] ~ 350 ppm, δ13CPDB= -49.4 ‰), depicted as: raw time series of 12CO2 and 13CO2 (bottom panel), 13CO2/12CO2 ratio time series (middle panel), and difference series between each sample interval and the mean of two adjacent reference intervals (top panel). Plots showing reference [12CO2] ~345 ppm (bottom panel) and isotope ratio of 0.940 = -60‰ (middle panel) are from directly retrieved (uncalibrated) values, illustrating intrinsic sensor accuracy of ~5% without calibration (high-accuracy applications like that discussed here would require regular calibrations). The flow rate of 0.5 SLPM in a cell volume of 0.5 liters at pressure of 7 Torr corresponds to a cell flushing (1/e) time of 0.6 s. The first 5 s of each 30 s interval were discarded in taking interval means.

Figure 4. Time series (upper plot) and corresponding Allan variance plot (lower) of a 4 hour time series collected by prototype 13CO2/12CO2 QCL sensor with ambient air sealed in the sample cell at 7 torr. Downward sloping straight lines on the allan plot show the theoretical behavior for white noise (slope -1) and pink noise (slope -1/2) processes.

Figure 5. Time series of ΔCO2 (sample tank relative to near-ambient reference tank, sampled at 1 Hz) and corresponding allan variance plot for 12CO2 measured by a CO2 QCL sensor (currently in development). This sensor achieves stabilization of drift and noise (compared to the prototype isotope ratio QCL, Figure 4) by operating in difference mode using two matched 10 cm cells (one for sample air and one for a known reference) and dividing sample spectrum by reference spectrum before fitting. Downward sloping straight lines on the allan plot show the theoretical behavior for white noise (slope -1) and pink noise (slope -1/2) processes.

Figure 6. (A) Summer 2003 Harvard forest δ13C vs. [CO2] (above canopy air sampled by flasks, see Lai et al. 2004) gives a relation allowing simulation of high-frequency δ13C from CO2. (B) actual w-CO2 covariance, and (C) simulated w-δ13C covariance (where δ13C is derived from the regression in (A)), illustrating the relatively small range of expected δ13C variation in a typical daytime half-hour (~0.4 ‰). Data in (B) and (C) is from July 2, 2003, 1300-1330 hrs.

Figure 7. (A) Half-hourly measured covariance between vertical wind and CO2 (black points connected by lines), along with photosynthetically active radiation (PAR) on July 15, 2003. (B) Half-hourly simulated isoflux on the same day, including ±1 SD uncertainty due to measurement error in (i) prototype sensor (larger blue error bars), and (ii) “development target” sensor (smaller black error bars).

Figure 8. (A) Simulated half-hourly isoflux (for 1330-1400, July 2, 2003), including ±1 SD uncertainty (simulated from pink noise error series with spectral density ~ 1/f 0.5), versus 1-

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sec rms error, and (B) corresponding half-hourly isoflux coefficient of variation (CV = SD/mean) as a function of 1-sec rms error, for both white noise and pink noise processes, and for prototype and development target sensor characteristics. The hatched shaded horizontal bar is the range of uncertainty induced by meteorological fluctuations, and is the irreducible noise inherently associated with turbulent flux measurements.

Figure 9. (A) Mean 10-day diel Harvard Forest hourly isoflux (<w’· (δ13C·[CO2])’> ± SEtotal, n=10 measurement days) simulated from July 2003 eddy data. SEtotal arises from both sample variation (from day-to-day variations and turbulent noise) and from spectroscopic measurement error, simulated here for both prototype and development target sensor characteristics. SEtotal is depicted both for measurement error component arising from prototype (larger bars) and from development target (smaller black error bars) sensors. (B) prototype sensor diel SEtotal from (A) (black line) partitioned into spectroscopic measurement (orange), and sampling (blue) error components. (C) same as (B), but for development target sensor characteristics. Note that sample variation, which is independent of sensor characteristics, is the same in both (B) and (C).

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FIG. 1

33

Page 34: Feasibility of 13CO2 eddy covariance flux measurements ... · Feasibility of 13CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer

MULTI-PASS (56 m)13CO2 (2311.396 cm-1)

TWO-PASS (0.74 m)12CO2 (2311.105 cm-1)

MULTI-PASS (56 m)13CO2 (2311.396 cm-1)

TWO-PASS (0.74 m)12CO2 (2311.105 cm-1)

FIG. 2

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345x103

340

335

330

325

CO

2 (pp

b)

8:52 AM1/21/2005

8:54 AM 8:56 AM 8:58 AM 9:00 AM 9:02 AM

0.97

0.96

0.95

0.94RA

TIO

/ 0.

0112

4

35.5x10-3

35.0

34.5

34.0

33.5

DIF

FER

ENC

E STD DEV = 0.18 ‰SAMPLE-REFERENCE mean = 34.5 ± 0.1 ‰ (2σ,n=11)

12CO2 13CO2 / 0.01124

RMS = 0.46 ‰ (1 Hz)

SAMPLE REFERENCE

FIG. 3.

35

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FIG. 4.

36

Page 37: Feasibility of 13CO2 eddy covariance flux measurements ... · Feasibility of 13CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer

0.0001

2

4

68

0.001

2

4

68

0.01

Alla

n va

rianc

e [p

pm2 ]

1 10 100 1000Integration time [s]

15.8

15.6

15.4

15.2Del

ta C

O2

[ppm

]

300025002000150010005000Data point (1-Hz measurement)

1-s rms = 0.1 ppmσA = 0.013 ppmτA = 230 s

(0.3‰ of 375ppm) (0.04‰ of 375ppm)

FIG. 5.

37

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A

B C

386 390

-3-2

-10

12

3

-9.1 -8.9CO2 (ppm) δ13CCO2 (‰)

w (m

sec

-1)

<w’ ·[CO2]’> = -0.63 <w’ ·δ13C’> = 0.03

386 390

-3-2

-10

12

3

-9.1 -8.9CO2 (ppm) δ13CCO2 (‰)

w (m

sec

-1)

<w’ ·[CO2]’> = -0.63 <w’ ·δ13C’> = 0.03

CO2 (ppm)

δ13 C

CO

2 (‰

)

350 400 450 500

-12

-10

-8 ][CO)().(.Cδ CO

13 2

17471304303272±+±−=

R2 =0.97RSE = 0.25 (on 53 d.f.)

CO2 (ppm)

δ13 C

CO

2 (‰

)

350 400 450 500

-12

-10

-8 ][CO)().(.Cδ CO

13 2

17471304303272±+±−=

R2 =0.97RSE = 0.25 (on 53 d.f.)

FIG. 6.

38

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-0.6

-0.2

0.2

010

0020

00

Isof

lux

(ppm

‰m

sec

-1)

5 10 15 20

-10

010

20

Hour of day

<w’[

CO

2]’>

(ppm

m s

ec-1

)

A

B

-0.6

-0.2

0.2

010

0020

00

Isof

lux

(ppm

‰m

sec

-1)

PA

R (μ

E m

-2se

c-1)

5 10 15 20

-10

010

20

Hour of day

<w’[

CO

2]’>

(ppm

m s

ec-1

)A

B

Isof

lux

(ppm

‰m

sec

-1)

PA

R (μ

E m

-2se

c-1)

5 10 15 20

-10

010

20

Hour of day

<w’[

CO

2]’>

(ppm

m s

ec-1

)A

B

PA

R (μ

E m

-2se

c-1)

FIG. 7.

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0.05 0.10 0.50 1.000.05 0.10 0.50 1.00

0.0

0.4

0.8

05

1015

20½

-hr I

soflu

x C

V

1-sec Allan plot σ (‰ Hz-1/2)

½-h

r Iso

flux

(ppm

‰m

/sec

)

“true” isoflux

pink noisewhite noise

prototypedevelopmenttarget

A

B

0.05 0.10 0.50 1.000.05 0.10 0.50 1.00

0.0

0.4

0.8

05

1015

20½

-hr I

soflu

x C

V

1-sec Allan plot σ (‰ Hz-1/2)

½-h

r Iso

flux

(ppm

‰m

/sec

)

0.05 0.10 0.50 1.000.05 0.10 0.50 1.00

0.0

0.4

0.8

05

1015

20½

-hr I

soflu

x C

V

1-sec Allan plot σ (‰ Hz-1/2)

½-h

r Iso

flux

(ppm

‰m

/sec

)

“true” isoflux

pink noisewhite noise

prototypedevelopmenttarget

A

B

FIG. 8.

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0246810

0.0

0.5

1.0

1.5

0.0

0.5

1.0

1.5

3 6 9 12 15 18 21 24

totalmeasurement

sampling

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

(ppm

‰m

sec

-1) A

B

C

hour of day

0246810

0.0

0.5

1.0

1.5

0.0

0.5

1.0

1.5

3 6 9 12 15 18 21 24

totalmeasurement

sampling

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

(ppm

‰m

sec

-1) A

B

C

0246810

0.0

0.5

1.0

1.5

0.0

0.5

1.0

1.5

3 6 9 12 15 18 21 24

totalmeasurement

sampling

0.0

0.5

1.0

1.5

3 6 9 12 15 18 21 24

totalmeasurement

sampling

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

SE

(ppm

‰m

sec

-1)

Isof

lux

(ppm

‰m

sec

-1) A

B

C

hour of day

FIG. 9.

41