Feasibility of 13 CO 2 eddy covariance flux measurements using a pulsed quantum cascade laser absorption spectrometer Scott R. Saleska 1 , Joanne H. Shorter 2 , Scott Herndon 2 , Rodrigo Jiménez 3 , J. Barry McManus 2 , David D. Nelson 2 , J. William Munger 3 , Mark S. Zahniser 2 Submitted to Isotopes in Environmental and Health Studies (special issue on spectroscopic approaches) 1 Dept. of Ecology and Evolutionary Biology, University of Arizona, Tucson AZ, 85721 USA 2 Aerodyne Research, Inc., 45 Manning Road, Billerica, MA, USA 01821 3 Dept. of Earth and Planetary Sciences and Division of Engineering and Applied Sciences, Harvard University, 20 Oxford Street, Cambridge, MA 02138. 1
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Feasibility of 13CO2 eddy covariance flux measurements using a pulsed quantum
cascade laser absorption spectrometer
Scott R. Saleska1, Joanne H. Shorter2, Scott Herndon2, Rodrigo Jiménez3, J. Barry
McManus2, David D. Nelson2, J. William Munger3, Mark S. Zahniser2
Submitted to
Isotopes in Environmental and Health Studies
(special issue on spectroscopic approaches)
1 Dept. of Ecology and Evolutionary Biology, University of Arizona, Tucson AZ, 85721 USA 2Aerodyne Research, Inc., 45 Manning Road, Billerica, MA, USA 01821 3 Dept. of Earth and Planetary Sciences and Division of Engineering and Applied Sciences,
Harvard University, 20 Oxford Street, Cambridge, MA 02138.
1
Abstract Better quantification of atmosphere-ecosystem exchange of the isotopologues of CO2
could substantially improve our ability to probe underlying physiological and ecological
mechanisms controlling ecosystem carbon exchange, but the ability to make long-term
continuous measurements of the isotopic composition of exchange fluxes has been limited by
measurement difficulties. Quantum cascade (QC) lasers are a new generation of infrared
light sources that offer increased stability and power for absorption spectroscopy
applications, including the measurement of atmospheric CO2 isotope ratios, and promise
substantial improvements over existing instruments: smaller size, increased robustness, and
most significantly for remote or long-term field deployments, no need for cryogenic cooling
of laser or detectors. In this paper, we used simulations to test whether the performance of a
where [CO2(sample)] is the CO2 concentration in the reference tank (close to ambient, ~375
ppm). εdevelop(t)(raw) is expressed as per mil deviation from the mean, relative to the
concentration being measured; it is inflated by √2 to account for effect of ratioing with a
hypothetical independent 13CO2 series with similar noise characteristics; εdevelop(t)(raw) has
mean zero and standard deviation 0.42‰ (= 1-sec rms noise). We believe this error series to
be a conservative estimate of the likely performance of a dual reference cell 13CO2/12CO2
QCL spectrometer, because it assumes that errors on the two isotopologues series are
independent (hence the √2 inflation of the actually measured series in Figure 5). By contrast,
the ratio time series from the prototype sensor exhibits significantly improved noise
characteristics relative to the individual time series, apparently due to canceling of correlated
errors, but this effect may be smaller in a development target sensor because each individual
series will already be the ratio of sample and reference cells. Finally εdevelop(t) is derived by
“calibrating” εdevelop(t)(raw) according to the same method described above for εprot(t).
We note that in practice, “calibrating” the noise time series in this way had very little
effect on the uncertainty of the calculated isoflux; the main reason for calibration in context
18
is to maintain long-term accuracy and prevent bias from creeping in to a longer time series of
half-hourly isofluxes.
The magnitude of simulated isoflux measurement error was quantified using the
“bootstrap” technique, i.e. by repeating the isoflux re-calculation for each of 100 bootstrap
resamples on each half hour and taking the standard deviation of the 100 bootstrapped
isofluxes, where each resample was generated with an independent realization of the
appropriate error time series.
2.3.2 Partitioning Isoflux variation: measurement error vs. sample variation We compared the magnitude of half-hourly sensor-induced measurement error, using
the standard of criterion one, to the magnitude of “meteorological” noise. We quantified
meteorological noise as the standard deviation of the “true” isoflux (i.e. without measurement
noise) across different half-hours with similar environmental driving variables
(photosynthetically active radiation, PAR), where “representative” half hours were taken
from within a given day (within 1 hour on either side) and from nearby measurement days
(within 5 days on either side).
In addition to simulating half-hourly isoflux measurements on a given day, we also
calculated 10-day hourly diurnal patterns of isoflux, a common approach to characterizing
ecosystem properties using noisy eddy covariance data (Wilson et al., 2003) that facilitates
analysis of how mean flux patterns respond to changes in mean diurnal patterns of driving
variables such as moisture, temperature and sunlight. We analyzed the overall variability in
simulated measured hourly means across the 10-day averaging period by partitioning the
total variability into two components: sample variation (the variation in “true” isoflux for a
given hour across the 10 measurement days due to day-day variations in environmental
19
conditions and turbulent noise) and measurement error (the uncertainty on flux for a given
single hour, quantified as the variation across 100 bootstrap re-“measurements” of that hour
generated according to the method of the previous section). For each hour of the day, total
variance on that hour can be partitioned as follows:
( ) ( )
( )22
22
2
j
22
jd,
2Tot
11
1 )( 1
daymeas
n
dd
day
n
dmeas
day
d
n
dboot
n
d
n
dd,jbootday
d,jbootday
d
dayday
d
dayday boot
FFnn
FFnFFnn
FFnn
σσ
σ
σ
+=
−+=
⎥⎦
⎤⎢⎣
⎡−+−=−≈
∑∑
∑∑∑∑
(4)
where Fd,j is the jth bootstrap isoflux for that hour on day d, dF is the mean flux for that hour
on day d (across all bootstrap resamples), and F is the grand mean flux for that hour (across
all days and bootstrap resamples); nday is the number of days (10), nboot is number of
bootstrap samples for each hour (100); and we have used the definitions
(∑ −=dayn
dd
dayday FF
n22 1σ ) (sample variance across days) and ( )∑ −=
bottn
jdjd
bootdmeas FF
n2
,2
)(1σ
(measurement variance on day d).
In this way, the standard error for each hour, SETot (= dayTot nσ ) is partitioned into
3. Results and Discussion The measured eddy covariance CO2 flux and the corresponding simulated half-hourly
isoflux (Figure 7) show that: (1) the error noise structure associated with the existing
prototype instrument (Figure 4A) can generate a time series of half-hour flux measurements
(Figure 7) that is unbiased (Figure 8A) but which has an isoflux uncertainty per daytime
20
half-hour that is somewhat greater than the irreducible “meteorological” noise inherently
associated with turbulent fluxes (Figure 8B); but that (2) the “development target” for the
isotope ratio QCL sensor (to achieve the performance already demonstrated with the 12CO2
QCL sensor, Figure 5) would enable isoflux measurements that approach the best precision
that can be achieved given the inherent uncertainty introduced by atmospheric turbulence
(Figure 8B). Prototype coefficient of variation (CV, the ratio of standard deviation to the
mean value) falls close to that produced by a pink noise with the same 1-sec rms, while
development target characteristics fall in between white and pink noise.
Note that the uncertainty on the integrated half-hour eddy covariance depends not on
the ability to resolve each high-frequency data point separately, but on the uncertainty
associated with δ13C (or whatever atmospheric scalar that is being measured) averaged over
the full integration period. More precisely, it is the quantity S<w’δ’> (the uncertainty on the
half-hour covariance <w’δ’>, where w’ and δ’ are vertical wind and isotope ratio
fluctuations, and <> indicates averaging) that must be sufficiently small. In the absence of
correlated measurement errors between w’ and δ’ (which must be absent for the eddy flux
measurement method to work at all), S<w’δ’> = <w’> S<δ’> + <δ’> S<w’> + S<w’>S<δ’> =
S<w’>S<δ’> (where S<x> is the standard error of the mean of quantity x averaged over the
integration period; terms like <x’> = 0 by definition of the Reynolds decomposition).
The simulation demonstrates this: development target performance is a 1-sec rms
noise of 0.4‰, which is approximately equal to the whole range of isotope data in Figure 6C;
clearly no individual high-frequency points could be resolved with this precision. But the
reduction in noise from averaging up to the half hour level can improve effective precision
21
substantially, in the ideal case of pure random white noise, by a factor of sqrt(1800) = 42; in
the case of random pink noise, by a factor of 18001/4 = 6.51.
The real strength of eddy covariance measurements (and the adequacy of the
performance of the QCL instrument for such measurements) becomes apparent when
measurements accumulated overall several days are averaged to produce a tightly constrained
mean diurnal curve (simulated for Harvard Forest isofluxes as measured by prototype-quality
or development-target quality instruments, in Figure 9). A dataset of many days or weeks at
a time (difficult or impossible to collect with flasks on an ongoing basis) would allow direct
observation of how such constrained flux patterns respond to variations in driving variables
such as moisture, temperature and sunlight.
In both the individual half-hourly time series (Figure 8B) and in the more relevant
aggregated 10-day diurnal cycle (Figure 9), the portion of the measurement error attributable
to instrument noise characteristics is comparable to the inherent meteorological noise
associated with turbulent fluxes. This suggests that according to the criterion comparing
measurement error to variation associated with turbulent fluxes, the performance of the QCL
isotope ratio spectrometer (in particular, the characteristics of the development target
instrument) is adequate to measure isofluxes at Harvard Forest about as well as they can be
expected to be measured.
Although in this paper we have focused on measuring the 13C/12C ratios of CO2 and
associated isofluxes, we note that the same laser can be tuned to absorption lines for
measuring the oxygen isotopic composition of CO2 as well, with precision expected to be
similar to that obtained for the carbon isotopes. Thus we expect that a field-deployable
version of the prototype discussed here could be used equally well to measure the oxygen
22
isofluxes of CO2. Indeed, with a dual laser configuration like that outlined in Jimenez et al.,
(2005), simultaneous high-accuracy measurement of both carbon and oxygen isotope ratios
of CO2 in the same sample cell should be possible.
The scientific benefit from the capacity to make continuous high-frequency δ18OCO2
measurements and associated isofluxes may well be greater than that from the carbon
isotopes, for at least two reasons. First, unlike 13CO2 (which because of its typically very
tightly constrained relation with CO2 – e.g. Figure 6A – is straightforward to estimate by
combining eddy flux with flask measurements, just as we have done here to simulate carbon
isofluxes), there is virtually no other approach for measuring C18OO isoflux above forest
ecosystems except for hyperbolic relaxed eddy accumulation (HREA), which adds additional
technical complexity to the labor-intensive processing of many flask samples (Bowling et al.,
1999). Second, as recently shown in an analysis by Ogée et al. (2004), the long-run potential
for effective partitioning of ecosystem CO2 fluxes is likely much greater using oxygen
isotopes of CO2 because the isotopic disequilibrium is between Fphoto and Fresp in equation 1
is almost an order of magnitude larger (~12 – 17 ‰) for oxygen than for carbon (~2‰). The
limiting factor in using oxygen isotopes for partitioning has been the difficulty in obtaining
more accurate δ18OCO2 isofluxes. Thus, our preliminary experiments with measuring carbon
isotope ratios in CO2 using QCL absorption spectroscopy suggests that this technology shows
high potential for oxygen isotopes of CO2, and hence for making significant scientific
progress on the CO2 flux partitioning problem.
4. Conclusions A pulsed-quantum cascade laser spectrometer operating in the mid-infrared spectral
region at 2311 cm-1 has sufficient resolution and stability to measure δ13C of atmospheric
23
CO2 with the speed and precision needed to enable the calculation of continuous isofluxes by
eddy covariance methods. The sensor measurement error in the prototype instrument tested
here is slightly larger than the irreducible “meteorological” noise inherently associated with
turbulent flux measurements above the Harvard Forest ecosystem, but plausible instrument
improvements (especially the addition of matched reference cells) can be expected, based on
the high performance of an existing 12CO2 sensor in which such improvements have already
been incorporated, to increase precision to the point where measurement error is less than
this meteorological noise. This suggests that QCL-based isotope ratio absorption
spectroscopy should be able to approach the precision at which sensor error is not a limiting
factor in making eddy covariance measurements of the isotopic composition of CO2 fluxes.
The key advantages offered by a field-deployable version of this instrument are: (1)
the ability to operate continuously with no need for cryogenic cooling (a significant
advantage for deployment in remote field sites); (2) increased temperature stability of the
isotopologue line-pairs, reducing the need for precise instrumental temperature control; and
(3) increased signal stability, reducing the frequency of calibration required to maintain high
precision to once every 25-30 minutes. This last advantage would make such an instrument
particularly suitable for eddy covariance applications above tall vegetation, where the
covariance needs to be integrated for periods of up to 30 minutes to capture the full spectrum
of flux transport.
The performance of this technology in measuring carbon isotope ratios of CO2
suggests that CO2 oxygen isotope ratios and associated isofluxes may also be measured.
Since oxygen isotopes may present better opportunities than carbon for partitioning net
ecosystem fluxes of CO2 into its photosynthetic and respiratory components, and a significant
24
limiting factor in oxygen-based CO2 flux partitioning is the difficulty in accurately measuring
isoflux, further development of the QCL-based absorption spectroscopy technology discussed
here should present significant opportunities for making progress on the CO2 flux-
partitioning problem.
25
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Tables
Table I. Instrument characteristics of: demonstrated lab prototype, conservatively-estimated development target, and the most closely related commercially available alternative. Key planned development modifications to improve performance of the prototype are shaded in gray, and key advantages for field deployment and eddy-covariance measurements, relative to the current state-of-the-art, are shaded in blue.
Lab Prototype (a)
Field-deployable de-velopment target (b)
Reference: current commercial state-of-the-
art (c)
Laser light source Laser type Pulsed QC infrared laser
continuous-wave lead-salt diode
Tuning range 2310 – 2315 cm-1 Absorption lines 13CO2: 2314 cm-1 or 2311 cm-1 2308cm-1 temperature stability re-quired for above line
~ 200-800 s 200 to 1500+ s (flat) 30 s Stability, as indicated by time to Allen σ2 minimum (provides an indicator of time interval between calibrations) response time 0.1 sec or faster 0.1 sec
Physical specifications & design features cooling of laser Thermoelectric (TE) TE LN2
cooling of detector LN2 TE LN2
Weight (incl. electronics) 75 kg 75 kg Analyzer unit dimensions 0.65m x 0.40m 2.1 m x 0.55 m Notes: (a) Prototype performance assessed from data in Figure 4. (b) Development target characteristics are conservatively estimated based on demonstrated performance (see Figure 5) of a similarly designed Aerodyne QC-TILDAS sensor for aircraft-based CO2 concentration measurements (currently under development). (c) TDA-100, Campbell Scientific (Logan, Utah). Based on information in Bowling et al. (2003).
30
Figures Figure 1. Schematic for prototype isotope ratio QCL absorption spectrometer.
Figure 2. CO2 isotopologue spectra with pulsed QC laser as recorded by TDL-WINTEL software. The cell contains 350 ppm CO2 in air at a total pressure of 7 Torr. The laser line width is 0.01 cm-1 hwhm.
Figure 3. Prototype isotope ratio QCL absorption spectrometer measurements of 13CO2 and 12CO2, alternating between sample air ([CO2] = 350 ppm, δ13CPDB unknown) and reference air ([CO2] ~ 350 ppm, δ13CPDB= -49.4 ‰), depicted as: raw time series of 12CO2 and 13CO2 (bottom panel), 13CO2/12CO2 ratio time series (middle panel), and difference series between each sample interval and the mean of two adjacent reference intervals (top panel). Plots showing reference [12CO2] ~345 ppm (bottom panel) and isotope ratio of 0.940 = -60‰ (middle panel) are from directly retrieved (uncalibrated) values, illustrating intrinsic sensor accuracy of ~5% without calibration (high-accuracy applications like that discussed here would require regular calibrations). The flow rate of 0.5 SLPM in a cell volume of 0.5 liters at pressure of 7 Torr corresponds to a cell flushing (1/e) time of 0.6 s. The first 5 s of each 30 s interval were discarded in taking interval means.
Figure 4. Time series (upper plot) and corresponding Allan variance plot (lower) of a 4 hour time series collected by prototype 13CO2/12CO2 QCL sensor with ambient air sealed in the sample cell at 7 torr. Downward sloping straight lines on the allan plot show the theoretical behavior for white noise (slope -1) and pink noise (slope -1/2) processes.
Figure 5. Time series of ΔCO2 (sample tank relative to near-ambient reference tank, sampled at 1 Hz) and corresponding allan variance plot for 12CO2 measured by a CO2 QCL sensor (currently in development). This sensor achieves stabilization of drift and noise (compared to the prototype isotope ratio QCL, Figure 4) by operating in difference mode using two matched 10 cm cells (one for sample air and one for a known reference) and dividing sample spectrum by reference spectrum before fitting. Downward sloping straight lines on the allan plot show the theoretical behavior for white noise (slope -1) and pink noise (slope -1/2) processes.
Figure 6. (A) Summer 2003 Harvard forest δ13C vs. [CO2] (above canopy air sampled by flasks, see Lai et al. 2004) gives a relation allowing simulation of high-frequency δ13C from CO2. (B) actual w-CO2 covariance, and (C) simulated w-δ13C covariance (where δ13C is derived from the regression in (A)), illustrating the relatively small range of expected δ13C variation in a typical daytime half-hour (~0.4 ‰). Data in (B) and (C) is from July 2, 2003, 1300-1330 hrs.
Figure 7. (A) Half-hourly measured covariance between vertical wind and CO2 (black points connected by lines), along with photosynthetically active radiation (PAR) on July 15, 2003. (B) Half-hourly simulated isoflux on the same day, including ±1 SD uncertainty due to measurement error in (i) prototype sensor (larger blue error bars), and (ii) “development target” sensor (smaller black error bars).
Figure 8. (A) Simulated half-hourly isoflux (for 1330-1400, July 2, 2003), including ±1 SD uncertainty (simulated from pink noise error series with spectral density ~ 1/f 0.5), versus 1-
31
sec rms error, and (B) corresponding half-hourly isoflux coefficient of variation (CV = SD/mean) as a function of 1-sec rms error, for both white noise and pink noise processes, and for prototype and development target sensor characteristics. The hatched shaded horizontal bar is the range of uncertainty induced by meteorological fluctuations, and is the irreducible noise inherently associated with turbulent flux measurements.
Figure 9. (A) Mean 10-day diel Harvard Forest hourly isoflux (<w’· (δ13C·[CO2])’> ± SEtotal, n=10 measurement days) simulated from July 2003 eddy data. SEtotal arises from both sample variation (from day-to-day variations and turbulent noise) and from spectroscopic measurement error, simulated here for both prototype and development target sensor characteristics. SEtotal is depicted both for measurement error component arising from prototype (larger bars) and from development target (smaller black error bars) sensors. (B) prototype sensor diel SEtotal from (A) (black line) partitioned into spectroscopic measurement (orange), and sampling (blue) error components. (C) same as (B), but for development target sensor characteristics. Note that sample variation, which is independent of sensor characteristics, is the same in both (B) and (C).
32
FIG. 1
33
MULTI-PASS (56 m)13CO2 (2311.396 cm-1)
TWO-PASS (0.74 m)12CO2 (2311.105 cm-1)
MULTI-PASS (56 m)13CO2 (2311.396 cm-1)
TWO-PASS (0.74 m)12CO2 (2311.105 cm-1)
FIG. 2
34
345x103
340
335
330
325
CO
2 (pp
b)
8:52 AM1/21/2005
8:54 AM 8:56 AM 8:58 AM 9:00 AM 9:02 AM
0.97
0.96
0.95
0.94RA
TIO
/ 0.
0112
4
35.5x10-3
35.0
34.5
34.0
33.5
DIF
FER
ENC
E STD DEV = 0.18 ‰SAMPLE-REFERENCE mean = 34.5 ± 0.1 ‰ (2σ,n=11)
12CO2 13CO2 / 0.01124
RMS = 0.46 ‰ (1 Hz)
SAMPLE REFERENCE
FIG. 3.
35
FIG. 4.
36
0.0001
2
4
68
0.001
2
4
68
0.01
Alla
n va
rianc
e [p
pm2 ]
1 10 100 1000Integration time [s]
15.8
15.6
15.4
15.2Del
ta C
O2
[ppm
]
300025002000150010005000Data point (1-Hz measurement)