FAIR Software (and Data) Citation: Europe, Research Object Systems, Networks and Off the Shelf Infrastructure Professor Carole Goble The University of Manchester, UK Software Sustainability Institute UK ELIXIR-UK, ELIXIR Interop Platform [email protected]Orcid 0000-0003-1219-2137 NSF Workshop Data and Software Citation, 6-7 June 2016, Boston USA, Software Panel
53
Embed
FAIR Software (and Data) Citation: Europe, Research Object Systems, Networks and Off the Shelf Infrastructure
This document is posted to help you gain knowledge. Please leave a comment to let me know what you think about it! Share it to your friends and learn new things together.
Transcript
FAIR Software (and Data) Citation: Europe, Research Object Systems,
Networks and Off the Shelf Infrastructure
Professor Carole GobleThe University of Manchester, UK
Software Sustainability Institute UKELIXIR-UK, ELIXIR Interop Platform
AcknowledgementsU Manchester• Stian Soiland-Reyes• Stuart Owen• Caroline Jay• Robert Haines• Norman MorrisonU Newcastle• Paolo MissierU Illinois Urbana-Champaign• Dan KatzMurphy Mitchell Consulting Ltd• Fiona MurphyF1000• Liz AllenU Oxford• Neil Jefferies• Lucie BurgessISI, USC• Yolanda Gil• Daniel Garijo
Force11 DCIP / Harvard• Tim ClarkELIXIR / BioSchemas.org• Rafael Jimenez (Hub)• Niall Beard (ELIXIR UK)• Aleks Nenadic (ELIXIR UK)• Jo McEntyre (EBI, THOR)NIH BD2K • Susanna Sansone (bioCADDIE,
ELIXIR)• Ian Fore (NIH)Software Sustainability Institute• Shoaib Sufi • Neil Chue Hong • Mike Jackson STFC• Catherine Jones
Citation G. Penkler; F. du Toit; W. Adams; M. Rautenbach; D. C. Palm; D. D. van Niekerk; J. L. Snoep; (2014): Glucose metabolism in Plasmodium falciparum trophozoites; FAIRDOMHub. http://dx.doi.org/10.15490/seek.1.investigation.56
• Multi-contributors• Spans resources• Independently stewarded• Shift and change
Content Contribution
• Metadata Framework: Bundles and relate multi-hosted scattered digital resources of a scientific experiment or investigation using standard mechanisms
• RO author/contributor information in its manifest
• ROs manifest => constituent resources, provenance for contribution.
*Ball, A. & Duke, M. (2011). "How to Cite Datasets and Link to Publications?". DCC How-to Guides. Edinburgh: Digital Curation Centre. http://www.dcc.ac.uk/resources/how-guides/cite-datasets.
Robust Transitivity & PropagationCitation and Credit Aggregation and Granularity
• Backward Citation– What was this based
on, who did it?• Forward Citation
– What is using this, who did that?
• “PageRank”
Credit Aggregation
Citation GranularityDrift
D. S. Katz, "Transitive Credit as a Means to Address Social and Technological Concerns Stemming from Citation and Attribution of Digital Products," Journal of Open Research Software, v.2(1): e20, pp. 1-4, 2014. DOI: 10.5334/jors.be
1
3
2
2
34
11
1
2
25
3
3
4
3
Who gets credit for what?
Using Provenance for Credit Mapping
Paolo Missier
Alice
Charlie
Bob
Paolo Missier, Data Trajectories: tracking reuse of published data for transitive credit attribution, IDCC 2016
Transitive Credit contributionDan Katz and Arfon Smith
*Katz, D.S. & Smith, A.M., (2015). Transitive Credit and JSON-LD. Journal of Open Research Software. 3(1), p.e7, DOI: http://doi.org/10.5334/jors.by
D. S. Katz, "Transitive Credit as a Means to Address Social and Technological Concerns Stemming from Citation and Attribution of Digital Products," Journal of Open Research Software, v.2(1): e20, pp. 1-4, 2014. DOI: 10.5334/jors.be
How do we weight and
track ?
https://www.refme.com/uk/
http://depsy.org/
• Literature mining– Duck et al Ambiguity and
variability of database and software names in bioinformatics (2015) DOI: 10.1186/s13326-015-0026-0
Find | Cite | CreditRamps “Riding the metadata COTS-tails”
• 3rd of web pages• Opening out -> community groups and extensions• Builds on a shared core and data structure• Simple embedding in web pages and CMS• Widespread tooling, harvesters and indexing• Search engines and Integration tools• It’s all about the metadata and knowledge graph
Google, Bing, Yahoo, Yandex
Find | Cite | CreditRamps “Riding the metadata COTS-tails”
DepthDATS
Reach
http://codemeta.github.io/
http://ontosoft.org/
Find | Cite | Credit Ramps “Riding the metadata COTS-tails”
Daniel Mietchen et al , Adapting JATS to support data citation, Journal Article Tag Suite Conference (JATS-Con) Proceedings 2015, Bethesda (MD): National Center for Biotechnology Information 2015.
Journal Article Tag Suite
DATS
SoftwareSourceCode
• Stretch in all directions– Granularity, Atomicity, Aggregation– Only partially automatable