current 2018 Michigan State University East Lansing, MI PhD. Candidate, Computational Mathematics, Science & Engineering Focused in quantifying plant morphology using topological data analysis (TDA) and X-Ray CT scans. Advisors: Elizabeth Munch and Dan Chitwood 2018 2013 Universidad de Guanajuato Guanajuato, Gto. B.S., Mathematics Thesis: Efcient object classication using the Euler characteristic Advisor: Dr. Antonio Rieser (CONACYT-CIMAT) current 2018 Chitwood-Munch Lab Michigan State University Graduate Research Assistant Exploring the morphology of Citrus and their tissues in general based on X-ray CT scans. Aiming to characterize barley spikes morphology with the Euler Characteristic Transform. Interested in reconstruction of 3D voxel data based on a limited number of height ltrations. 2018 2016 Rieser Lab CIMAT Undergraduate Research Assistant Part of CIMAT-IPICYT-INAH joint research involving mathematics, computer science and archaeology. Provided a rst new classication of a test set of pre-Columbian masks based on Euler characteristic curves. 2016 Jack Lab Universidad de Guanajuato Undergraduate Researcher Developed C/C++ code to check for presence of certain chemical elements in a supernova based on wavelength information. View this CV online at egr.msu.edu/~amezqui3/cv.html CONTACT 428 S Shaw Ln, Engineering Building Rm 1515, East Lansing, MI 48824 [email protected]github.com/amezqui3 egr.msu.edu/~amezqui3 SKILLS Programming: Python, R, C/C++, bash/unix Technologies: LaTeX, RMarkdown, jupyter, vim, html/css Languages: Spanish (native), English (near native), French (elementary) Made with the R package pagedown. Last updated on 2021-09-13. ERIK AMÉZQUITA I have interdisciplinary experience working in coding and data analysis reseach projects with plant biologists, archaeologists, and astronomers. EDUCATION | • • | • • RESEARCH EXPERIENCE | • • • | • • •
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current
2018Michigan State University East Lansing, MIPhD. Candidate, Computational Mathematics, Science & Engineering
Focused in quantifying plant morphology using topological dataanalysis (TDA) and X-Ray CT scans.Advisors: Elizabeth Munch and Dan Chitwood
2018
2013Universidad de Guanajuato Guanajuato, Gto.B.S., Mathematics
Thesis: Ef�cient object classi�cation using the Euler characteristicAdvisor: Dr. Antonio Rieser (CONACYT-CIMAT)
current
2018Chitwood-Munch Lab Michigan State UniversityGraduate Research Assistant
Exploring the morphology of Citrus and their tissues in general basedon X-ray CT scans.Aiming to characterize barley spikes morphology with the EulerCharacteristic Transform.Interested in reconstruction of 3D voxel data based on a limitednumber of height �ltrations.
2018
2016Rieser Lab CIMATUndergraduate Research Assistant
Part of CIMAT-IPICYT-INAH joint research involving mathematics,computer science and archaeology.Provided a �rst new classi�cation of a test set of pre-Columbian masksbased on Euler characteristic curves.
2016Jack Lab Universidad de GuanajuatoUndergraduate Researcher
Developed C/C++ code to check for presence of certain chemicalelements in a supernova based on wavelength information.
View this CV online ategr.msu.edu/~amezqui3/cv.html
ERIK AMÉZQUITAI have interdisciplinary experience working in coding and data analysis reseachprojects with plant biologists, archaeologists, and astronomers.
2020Erik J. Amézquita, Michelle Y. Quigley, Tim Ophelders, Elizabeth Munch, Daniel H. ChitwoodThe shape of things to come: Topological data analysis and biology, from molecules to organisms
Developmental Dynamics. 249(7) pp. 816-833. DOI: 10.1002/dvdy.175
2021SIAM Annual Meeting 2021. Society for Industrial and Applied Mathematics.Quantifying barley morphology using the Euler Characteristic
2021
GLBIO 2021. Great Lakes Bioinformatics Conference.
Describing demeter: using the Euler characteristic to quantify the shape and biology
2021ISCB Posterpalooza. International Society for Computational Biology.Using topology to analyze the shape of barley
2021Seminario Jr. Departamento de Matemáticas. Universidad de GuanajuatoBotánica y Análisis Topológico de Datos
20212021 NAPPN. North American Plant Phenotyping Network.Analyzing maize leaf angles and modeling leaf curvature
2020FEST 2020Demeter y Euler van por una cerveza
2020
YRF @ SoCG. Young Researcher Forum @ Symposium on Computational Geometry.Quantifying the shape of barley using the Euler characteristic
2020Seminario AME. Instituto Politécnico Nacional. MéxicoMidiendo la forma de la cebada usando Análisis Topológico de Datos
2018II Coloquio de Desarrollo Tecnológico al Servicio del Patrimonio CulturalE�cient object classi�cation using the Euler characteristic
20212021 AATRN Tutorial-a-thon. Applied Algebraic Topology Research Network.Using the Euler characteristic to quantify the shape in biology
Recorded for the AATRN YouTube Resource channel
2021
2021 NAPPN. North American Plant Phenotyping Network.Measuring the shape of plants with Topological Data Analysis
1h workshop where audience was mainly from the plant biology realm.
2017Ciencia es Cultura. Dirección de Extensión Cultural. Universidad de Guanajuato.Un matemático y un psicólogo se hallan en Hanoi
Outreach talk for a high school audience
2016Ciencia es Cultura. Dirección de Extensión Cultural. Universidad de Guanajuato.In�nitos grandes e in�nitos pequeños
Outreach talk for a high school audience
current
2021SMB Subgroup: Methods for Biological ModelingWebmaster
2019Plant Breeding, Genetics, and Biotechnology symposium. Michigan State University.Finance Comittee Chair. PBGB symposium
2017
2016College of Natural and Exact Sciences Council. Universidad de Guanajuato.Student Representative
Logged each session minutes, such as budget or policy, and shared them with the math students.
2016
2015Escuela de Nivel Medio Superior, Guanajuato. Guanajuato.High School Mathematics Seminar Co-Organizer
Delivered lectures on math topics usually not covered at high school levels, such as combinatorics orgroup theory.
2013
2012Math Olympiad National Team. Guatemala.Tutor of the Guatemalan Math Olympiad Team
Successfully lobbied the Guatemalan Department of Education to obtain funding for 3 students toparticipate in the 15th Central American and Caribbean Math Olympiad.
2019Applied Mathematical Modeling with Topological Techniques. ICERMTravel Grant
2019Michigan State UniversityIMPACTS Fellowship
Awarded jointly by MSU and the NRT-NSF program.
2018Sociedad Mexicana de MatemáticasSotero Prieto Medal
Best undergrad math thesis produced in Mexico during the 2017-18 academic year.
2018Asociación Mexicana de EstadísticaFrancisco Aranda Ordaz Award
3rd place. Best undergrad statistics theses produced in Mexico during the 2016-18 academic years.