Govt. Holkar Science College Indore. (M.P.) DEPT. OF BIOTECHNOLOY PAPER 1- ENZYMOLOGY TOPIC : ENZYME STABILITY
Govt Holkar Science CollegeIndore (MP)
DEPT OF BIOTECHNOLOY
PAPER 1- ENZYMOLOGY
TOPIC ENZYME
STABILITY
Contents-
bull Short Introduction to Enzymes
bull Need for enzyme stability
Biological and industrial use of enzymes
bull Enzyme Stabilization
bull Techniques for enzyme Stabilization1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure
5 Through Nanotechnology
6 Freeze drying
bull Conclusion
Introduction to ENZYMESbull Enzymes are proteins that catalyze chemical reaction The term
ldquoenzymerdquo was given by Kuhne in 1878 although the first observation of enzyme activity in a test tube was reported by Payen amp Persoz in 1833
bull Enzyme increases the rate of such reaction by 103-106 fold that occur at a very slow rate
bull Enzymes are usually proteins They are high molecular weight compounds made up principally of chains of amino acids linked together by peptide bonds
bull Enzymes can be denatured and precipitated with salts solvents and other reagents They have molecular weights ranging from 10000 to 2000000 daltons
bull Despite their obvious advantages as process catalysts biocatalysts as proteins they are labile molecules Therefore biocatalyst stability and stabilization is a central issue of biotechnology today In fact biocatalyst operational stability will determine to a large extent the viability of the process
Need for ENZYME STABILITYbull Enzymes are protein-based molecules whose function is to catalyze
chemical reactions in the body
bull Specific enzymes are produced for particular chemical reactions
Thus enzymes have highly specific reactions and an enzyme converts
a particular substrate into a particular product
bull Enzymes are very important to maintain metabolic processes in the
body A defect in the level of enzymes can cause abnormalities
bull Thus research is going on to develop methods to isolate enzymes
However the biggest challenge in this is the instability of enzymes
bull The specific action of enzymes depends on the sequence and the
overall 3-dimensional arrangement of the amino acids If not handled
carefully the protein structure of the enzymes gets altered and they
lose their function
Biological Functions of Enzymesbull Enzymes serve a wide variety of functions inside living organisms
bull They are indispensable for signal transduction and cell regulation
often via kinases and phosphatases
bull They also generate movement with myosin hydrolyzing ATP to
generate muscle contraction and also moving cargo around the cell
as part of the cytoskeleton
bull Other ATPases in the cell membrane are ion pumps involved
in active transport
bull Enzymes are also involved in more exotic functions such as
luciferase generating light in fireflies
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Contents-
bull Short Introduction to Enzymes
bull Need for enzyme stability
Biological and industrial use of enzymes
bull Enzyme Stabilization
bull Techniques for enzyme Stabilization1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure
5 Through Nanotechnology
6 Freeze drying
bull Conclusion
Introduction to ENZYMESbull Enzymes are proteins that catalyze chemical reaction The term
ldquoenzymerdquo was given by Kuhne in 1878 although the first observation of enzyme activity in a test tube was reported by Payen amp Persoz in 1833
bull Enzyme increases the rate of such reaction by 103-106 fold that occur at a very slow rate
bull Enzymes are usually proteins They are high molecular weight compounds made up principally of chains of amino acids linked together by peptide bonds
bull Enzymes can be denatured and precipitated with salts solvents and other reagents They have molecular weights ranging from 10000 to 2000000 daltons
bull Despite their obvious advantages as process catalysts biocatalysts as proteins they are labile molecules Therefore biocatalyst stability and stabilization is a central issue of biotechnology today In fact biocatalyst operational stability will determine to a large extent the viability of the process
Need for ENZYME STABILITYbull Enzymes are protein-based molecules whose function is to catalyze
chemical reactions in the body
bull Specific enzymes are produced for particular chemical reactions
Thus enzymes have highly specific reactions and an enzyme converts
a particular substrate into a particular product
bull Enzymes are very important to maintain metabolic processes in the
body A defect in the level of enzymes can cause abnormalities
bull Thus research is going on to develop methods to isolate enzymes
However the biggest challenge in this is the instability of enzymes
bull The specific action of enzymes depends on the sequence and the
overall 3-dimensional arrangement of the amino acids If not handled
carefully the protein structure of the enzymes gets altered and they
lose their function
Biological Functions of Enzymesbull Enzymes serve a wide variety of functions inside living organisms
bull They are indispensable for signal transduction and cell regulation
often via kinases and phosphatases
bull They also generate movement with myosin hydrolyzing ATP to
generate muscle contraction and also moving cargo around the cell
as part of the cytoskeleton
bull Other ATPases in the cell membrane are ion pumps involved
in active transport
bull Enzymes are also involved in more exotic functions such as
luciferase generating light in fireflies
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Introduction to ENZYMESbull Enzymes are proteins that catalyze chemical reaction The term
ldquoenzymerdquo was given by Kuhne in 1878 although the first observation of enzyme activity in a test tube was reported by Payen amp Persoz in 1833
bull Enzyme increases the rate of such reaction by 103-106 fold that occur at a very slow rate
bull Enzymes are usually proteins They are high molecular weight compounds made up principally of chains of amino acids linked together by peptide bonds
bull Enzymes can be denatured and precipitated with salts solvents and other reagents They have molecular weights ranging from 10000 to 2000000 daltons
bull Despite their obvious advantages as process catalysts biocatalysts as proteins they are labile molecules Therefore biocatalyst stability and stabilization is a central issue of biotechnology today In fact biocatalyst operational stability will determine to a large extent the viability of the process
Need for ENZYME STABILITYbull Enzymes are protein-based molecules whose function is to catalyze
chemical reactions in the body
bull Specific enzymes are produced for particular chemical reactions
Thus enzymes have highly specific reactions and an enzyme converts
a particular substrate into a particular product
bull Enzymes are very important to maintain metabolic processes in the
body A defect in the level of enzymes can cause abnormalities
bull Thus research is going on to develop methods to isolate enzymes
However the biggest challenge in this is the instability of enzymes
bull The specific action of enzymes depends on the sequence and the
overall 3-dimensional arrangement of the amino acids If not handled
carefully the protein structure of the enzymes gets altered and they
lose their function
Biological Functions of Enzymesbull Enzymes serve a wide variety of functions inside living organisms
bull They are indispensable for signal transduction and cell regulation
often via kinases and phosphatases
bull They also generate movement with myosin hydrolyzing ATP to
generate muscle contraction and also moving cargo around the cell
as part of the cytoskeleton
bull Other ATPases in the cell membrane are ion pumps involved
in active transport
bull Enzymes are also involved in more exotic functions such as
luciferase generating light in fireflies
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Need for ENZYME STABILITYbull Enzymes are protein-based molecules whose function is to catalyze
chemical reactions in the body
bull Specific enzymes are produced for particular chemical reactions
Thus enzymes have highly specific reactions and an enzyme converts
a particular substrate into a particular product
bull Enzymes are very important to maintain metabolic processes in the
body A defect in the level of enzymes can cause abnormalities
bull Thus research is going on to develop methods to isolate enzymes
However the biggest challenge in this is the instability of enzymes
bull The specific action of enzymes depends on the sequence and the
overall 3-dimensional arrangement of the amino acids If not handled
carefully the protein structure of the enzymes gets altered and they
lose their function
Biological Functions of Enzymesbull Enzymes serve a wide variety of functions inside living organisms
bull They are indispensable for signal transduction and cell regulation
often via kinases and phosphatases
bull They also generate movement with myosin hydrolyzing ATP to
generate muscle contraction and also moving cargo around the cell
as part of the cytoskeleton
bull Other ATPases in the cell membrane are ion pumps involved
in active transport
bull Enzymes are also involved in more exotic functions such as
luciferase generating light in fireflies
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Biological Functions of Enzymesbull Enzymes serve a wide variety of functions inside living organisms
bull They are indispensable for signal transduction and cell regulation
often via kinases and phosphatases
bull They also generate movement with myosin hydrolyzing ATP to
generate muscle contraction and also moving cargo around the cell
as part of the cytoskeleton
bull Other ATPases in the cell membrane are ion pumps involved
in active transport
bull Enzymes are also involved in more exotic functions such as
luciferase generating light in fireflies
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Conthellipbull An important function of enzymes is in the digestive systems of
animals Enzymes such as amylases and proteases break down large
molecules (starch or proteins respectively) into smaller ones so they
can be absorbed by the intestines
bull Different enzymes digest different food substances In ruminants
which have herbivorous diets microorganisms in the gut produce
another enzyme cellulase to break down the cellulose cell walls of
plant fiber
bull Several enzymes can work together in a specific order
creating metabolic pathways In a metabolic pathway one enzyme
takes the product of another enzyme as a substrate After the catalytic
reaction the product is then passed on to another enzyme
bull Enzymes determine what steps occur in these pathways Without
enzymes metabolism would neither progress through the same steps
nor be fast enough to serve the needs of the cell
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Application Enzymes used Uses
Food processing
Amylases catalyze the
release of simple sugars
from starch
Amylases from fungi and plants
Production of sugars from starch such as in
making high-fructose corn syrup In baking
catalyze breakdown of starch in the flour to
sugar Yeast fermentation of sugar produces
the carbon dioxide that raises the dough
ProteasesBiscuit manufacturers use them to lower the
protein level of flour
Baby foods Trypsin To predigest baby foods
Brewing industry
Germinating barley used
for malt
Enzymes from barley are released during the
mashing stage of beer production
They degrade starch and proteins to produce
simple sugar amino acids and peptides that are
used by yeast for fermentation
Industrially produced barley enzymes
Widely used in the brewing process to
substitute for the natural enzymes found in
barley
Amylase glucanases proteases Split polysaccharides and proteins in the malt
Betaglucanases and arabinoxylanasesImprove the wort and beer filtration
characteristics
Amyloglucosidase and pullulanasesLow-calorie beer and adjustment of
fermentability
ProteasesRemove cloudiness produced during storage of
beers
Acetolactatedecarboxylase (ALDC)Increases fermentation efficiency by
reducing diacetyl formation[88]
Indstrial Application
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Enzyme Stabilization
bull Enzyme Stabilization is gaining importance due to the wide range of enzyme applications Other than medical research they can be used in food chemical and pharmaceutical industries
bull To use these biocatalysts called enzymes to their full potential it is very important to achieve progress in enzyme stabilization
bull Factors affecting enzyme stability are-
bull pH (optimum pH- 45 ndash 80 )
bull Temperature (optimum temp-25C -37C)
bull Ionic strength
bull Solvent
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
The techniques that have been attempted to achieve
enzyme stabilization can be divided into broad
categories Some of them are
1 Immobilization
2 Enzyme Engineering
3 Solvent Engineering
4 Modification of chemical structure of enzymes
5 Through Nanobiotechnology
6 Freeze drying
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
IMMOBILIZATION OF ENZYMES
bull Enzyme immobilization may be defined as confining the enzyme molecules to a distint phase from the one in which the substrates and products are present this may be achieved by fixing the enzyme molecules to or within some suitable material
bull Immobilization of enzymes molecules does not necessarily render them immobile For eg-
i Entrapment amp Membrane Confinement-enzyme molecules move freely within their phase
ii Adsorption amp Covalent Binding- enzymes are immobile
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
MATERIAL USED- Material used for immobilization of enzymes is called Carrier
Matrices (usually inert polymers or inorganic materials)
Some of the commonly used matrices are ion exchange matrices porous carbon clays hydrous metal oxides glasses and polymeric aromatic resins agarose cellulose polyacrylamide(ion exchange matrices are costly but they can be readily regenerated by a simple operation eg washing off the absorbed enzyme with a concentrated salt solution)
The ideal matrix should have the following properties- Low cost
Inertness
Physical strength
Stability
Regenerability
Enhancement of enzyme specificity
Reduction in product inhibition
Reduction in microbial contamination and non-specific adsorption
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
METHODS OF IMMOBILIZATION
bull There are four principal
methods available for
immobilising enzymes
a Adsorption
b Covalent binding
c Entrapment
d Membrane
Confinement
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
A ADSORPTION-bull The enzyme molecules adhere to the surface of carrier matrix due
to a combination of hydrophobic effects and the formation of
several salt links per enzyme molecule
bull The binding of enzyme molecules to the carrier matrix is usually
very strong but it may be weakened during use by many factors
eg addition of substrate pH or ionic strength etc
bull Adsorption of enzymes to the matrices is very easy and widely
used The enzymes is mixed with a suitable adsorbent under
appropriate conditions of pH and ionic strength
bull After incubation for a sufficient period of time the carrier is
washed to remove un-absorbed enzyme molecules and the
immobilized enzyme is ready for use
bull This method usually produce a high loading (1g enzymeg matrix)
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
B COVALENT BINDING -
bull In this the enzyme molecules are attached to the carrier matrix by
formation of covalent bonds
bull The strength of binding is very strong and there is no enzyme loss
during use
bull The covalent bond formation occurs with the side chains of amino
acids of the enzyme their degree of reactivity being dependent on
their charge (Lysine residues are the most useful in covalent binding)
bull The most commonly employed matrices are agarose celluloses
polyacrylamides
bull Sepharose an agarose is available commercially as beads is highly
hydrophilic and is generally inert to microbial attack (Sepharose is
activated by a treatment with cyanogen bromide which forms highly
reactive intermediates with the ndashOH groups of sapharose the enzyme
molecules bind to these activated groups)
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
C Entrapment -
bull In this approach enzyme molecules are held or entrapped within suitable gels or fibres and there may or may not be covalent bond formation between the enzyme molecules and the matrix
bull Covalent binding is also can be generated enzyme molecules are usually treated with a suitable reagent For eg acryloyl chloride is used to prepare lysine residues for binding by forming acryloyl amides these are then copolymerized amp crosslinkedwith acrylamide and bisacrylamide to form gel containing entrapped enzyme
bull Enzymes may be entrapped within cellulose acetate fibres
bull Enzyme loading in the entrapment
procedures is very high
(1gg gel or fiber)
Due to this diffusion of substrate
to the enzyme and of the product
away from the enzymes creates difficulties
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
D Membrane Confinement -bull Enzymes molecules usually in aqueous solution may be confined
within a semipermeable membrane which ideally allows a free movement in either direction to the substrate and the products but does not permit the enzyme molecules to escape
bull No of strategies are employed for this purpose-
1 The reaction vessel is partitioned into two chambers by a semipermeable membrane One chamber contains the enzyme while the other has the substrate and the product
2 Hollow fibre membrane units contain the enzyme in the fibre lumen or hollow space and the fibres themselves are sumbmerged in the substrate This strategy provide large surface area per unit volume (gt20m2l) but for only such substrates that are much smaller than the enzyme molecules
3 Enzymes may be packed in microcapsules formed by polymerization reaction (16-diaminphexane) They may be enclosed within liposomes(small spheres made up of concenteric lipid membranes)
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
CharacteristicsAdsorption Covalent
bindingEntrapment
Membrane
confinement
Preparation Simple Difficult Difficult Simple
Cost Low High Moderate High
Binding force Variable Strong Weak Strong
Enzyme leakage Yes No Yes No
Applicability Wide Selective Wide Very wide
Running Problems High Low High High
Matrix effects Yes Yes Yes No
Large diffusional barriers No No Yes Yes
Microbial protection No No Yes Yes
Generalised comparison of different enzyme
immobilisation techniques
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Enzyme Engineering
bull Improvement in the activity and usefulness of an existing enzymes(stability) or creation of a new enzyme activity by making suitable changes in its amino acid sequence is called Enzyme Engineering
bull When this approach is used for any protein whether enzyme or non-enzyme it is termed as Protein Engineering
bull Enzyme engineering utilizes recombinant DNA technology to introduce the desired changes in the amino acid sequences of enzymes
bull The recombinant strain produce the enzyme in considerably higher quantity than did the originalparent strain which reduce production costs amp enhance enzyme purity
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Objective of Enzyme Engineering
bull The chief objective is to produce an enzyme that is more useful for industrial or other applications
bull Through Enzyme Engineering various properties of enzymes that may be modified are-
i Improved kinetic properties
ii Enhance substrate and product specificity
iii Increased thermostability
iv Alteration in optimal pH
v Suitability for use in organic solvents
vi Increaseddecreased optimal temperature
vii Increased stability to oxidizing agents heavy metals etc
viiiResistance to proteolytic degradation
ix Fusion of two or more enzymes to create bi- and poly-functional enzymes
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Principle and Steps in Enzyme Engineering
bull The structure and function of an enzyme molecule are chiefly
determined by its amino acid sequence ie its primary structure
bull Therefore any change in the amino acid sequence should alter the
properties of the enzyme
bull But it is not always the case because the enzymatic properties are
changed only when amino acid changes are introduced in certain critical
regions of the protein This is possible through SITE DIRECTED
MUTAGENESIS
bull Therefore it is of great importance to know the critical regions for the
various functions of an enzyme
bull The case of alkaline protease being a paradigm Already in the market
thermostable proteases capable to withstand harsh washing conditions
(high pH high concentration of strong oxidants) are products of protein
engineering produced by point aminoacid substitutions in the most labile
region of the molecule
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Expression of the
modified gene in a
suitable HOST eg Ecoli
Isolstion and cloning of the
conserned gene desired change in
base sequence by SITE-
DIRECTED MUTAGENESIS
Analysis of Structure Function
Relationship Molecular Modelling
Prediction of the Desired Amino
Acid Seqence
Isolation and Purification of
Enzyme Determination of
Structure and Function
Database
Summary of various steps involved in Enzyme Engineering
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Solvent Engineering
bull Solvent engineering seeks to usefully modify properties of enzymes simply by using appropriate organic solvents to carry out the enzyme-catalysed reactions
bull This is in contrast to enzyme engineering which aims to modify the properties of an enzyme by making appropriate changes in its amino acid sequence
bull A recent development is to use PEG modified enzymes those are soluble in organic solvents and form homogenous reaction systems which do not pose diffusion problems
bull The main purpose of medium engineering in biocatalysis is associated with the utilization of robust commercial hydrolytic enzymes in organic synthesis thermostability in organic media is an additional bonus of great significance in process economy
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
The Effect of Organic Solvents on the
Enzymesbull A hydrophobic solvent does not change the three dimensional
structures of enzymes while hydrophilic solvents extract the water associated with the enzyme which often leads to their inactivation
bull Organic solvents can modulate enzyme specificity and enzymes in organic media often show altered substrate specificity as compared to that in water For eg- chymotrypsin prefer hydrophobic nonpolar substrates in water while in organic media they show a preference for hydrophilic substrates
bull Enzymes suspended in organic solvents often show enhanced thermostability under optimal conditions they remain stable upto 150C
bull Enzymes may be engineered for a better performance in organic solvents It was found that a substitution of charge residues by uncharged residues on the protein surface and enhanced hydrogen bonding abilities had a +ve effect on enzyme stability
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Stabilization by chemical modification
bull Stabilization by chemical modification of the protein molecule is attractive
but has not received much attention Increased stability has been obtained by
the introduction of hydrophilic groups in the surface of the enzyme molecule
that reduces the contact of hydrophobic regions with water thereby
preventing incorrect refolding after reversible denaturation
bull Extrinsically enzyme stability may be changed by the addition of suitable
stabilizing effectors (cations cross-links peptides etc)
bull Glutaraldehyde crosslinking of enzyme crystals and polyethylene glycol (PEG) modification of enzyme surface amino groups are practical methods to enhance biocatalyst stability
bull Whereas crosslinking of enzyme crystals generates easily recoverable insoluble biocatalysts
bull PEGylation increases solubility in organic solvents
bull Chemical modification has been exploited for the incorporation of cofactors onto protein templates and for atom replacement in order to generate new functionality such as the conversion of a hydrolase into a peroxidase
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Enzymes can be made suitable by adding following substances-
bull Additives used includes metal ionssalt sugar surfactants organic solvents(eg polyols) and soluble inert molecules ie polyethylene glycol
bull Metal ion such as Ca++ have been used to stabilize trypsin chymotrpsin and amylase Ca++ is known to result in the formation of ionic bridging in enzyme molecules
bull Addition of Co++ and Mn++ has been shown to improve the thermostability of the enzyme cyclic phosphodiesterase
bull The effect of salt containing ions such as Li+ Na+ Cs+ K+ I- F- NO3
- SO4--etc on enzyme stability has also been studied For
eg- alcohol dehydrogenase is activated by low conc Of Na+ K+ and Li+ but inhibited by high conc Of the same cations
bull Increasing ionic strength of enzyme solutions by adding salts such as Na2SO4 NaCl KCl stabilizes chymotrypsin and sodium chloride stabilizes amylase during storage
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull The stabilizing sugar includes glucose fructose maltose sucrose trehalose mannitol sorbitol and glycerol Stabilizing action of these substances is associated with hydrogen bonding hydrophobic interactions ionic and Van der waalsforces between sugar and enzyme molecules
bull The effectiveness of a compound as a stabilizing agent depends upon the no of hydroxyl group it contains
bull Surfactants are other possible stabilizers For eg- Triton X-100
bull Organic solvents like Glycerol has been shown to stabilize both lactate and malate dehydrogenase during storage at 4C
bull Ethanol methanol propanol isopropanol butanol acetone etc have also been shown to stabilize these enzymes
bull Addition of polyvinyl alcohol at low conc Enhanced activity of Aspergillus niger glucomylase
bull The stabilizing effect of solvent is associated with their ability to displace water molecules from vicinity of enzymes
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Nanotechnologybull Enzymes are proteins that function as biocatalysts in living systems One of the major
concerns in environmental biomedical and other applications of enzymes is their short lifetime
bull Enzymes lose their activity due to oxidation or other processes which results in less stability and a shorter lifetime thereby rendering them less efficient
bull An effective way to increase the stability longevity and reusability of the enzymes is to attach them to nanoparticles
bull With this aim two different catabolic enzymes trypsin and peroxidase were attached to uniform magnetic core-shell iron nanoparticles (MNPs)
bull By doing so the lifetime of enzymes increases dramatically from a few hours to weeks and that MNP-Enzyme conjugates are more stable efficient and economical
bull We predict that nanostructures shield the enzymes preventing them from getting oxidized or self digested
bull Significant enhancement of enzyme stabilization was realized as introducing cross-linked
enzyme aggregates (CLEAs) via glutaraldehyde mediated coupling with various
nanostructured materials such as nanofiber carbon nanotube or mesoporous silica
bull Nanostructure -enzyme conjugates could efficiently be reused which makes enzymes more productive We also found that the enzyme structure plays a major role in efficient attachment of nanostructures
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull In nanotechnology a particle is defined as a small object that behaves as a whole unit in terms of its transport and properties Particles are further classified according to size(in terms of diameter) nanoparticles are sized between 100 and 1 nanometers
bull Nanoparticles may include gold silica glass metal oxides etc
bull Properties of nanoparticles include biocompatibility superparamagnetism small size and low toxicity
bull Application of nanotechnology-bull Fluorescent biological labels bull - Drug and gene deliverybull - Bio detection of pathogensbull - Detection of proteinsbull - Probing of DNA structurebull - Tissue engineeringbull - Tumour destruction via heating (hyperthermia)bull - Separation and purification of biological molecules and cells
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Examples for explaning use of nanoparticles in enzyme immobilization-
bull Lipases (glycerol ester hydrolases) are an important group of enzymes which have been widely used in the catalysis of different reactions
bull These enzymes have been applied in chemical and pharmaceutical industrial applications due to their catalytic activity in both hydrolytic and synthetic reactions However free lipases are easily inactivated and difficult to recover for reuse
bull Therefore especially in large-scale applications lipases are often immobilized on solid supports in order to facilitate recovery and improve operational stability under a wide variety of reaction conditions
bull Some lipase immobilization strategies involve the conjugation of lipases via covalent attachment cross-linking adsorption and entrapment onto hydrophobic or hydrophilic polymeric and inorganic matrixes
bull In recent years magnetic nanoparticles (MNPs) based on iron oxides have attracted much interest thanks to their multifunctional properties such as biocompatibility superparamagnetism small size and low toxicity They have been applied in magnetic resonance imaging (MRI) biosensors and as anti-cancer drugs carriers Due to their high specific surface area and easy separation from the reaction medium by the use of a magnet they have been employed in enzymatic catalysis applications
bull Typical strategies for immobilizing lipase onto MNPs rely on surface grafting via low molecular weight linkers or polymers containing amino or epoxy functional groups to which lipases are reacted via covalent conjugation methods Using such methods the maximum reported loading capacity of lipase on nanoparticles is approximately 130 mgg
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Working-bull In this work we present approach to immobilize
lipases onto iron oxide MNP surfaces modified with polydopamine an in-situ formed coating inspired by the adhesive proteins secreted by marine mussels
bull The ortho-dihydroxyphenyl (catechol) functional group found in dopamine is also present in mussel adhesive proteins in the form of the amino acid DOPA where it is highly adhesive to oxide surfaces and under alkaline conditions oxidizes to form quinone a species that is reactive toward nucleophiles such as primary amines
bull Dopamine containing both catechol and primary amine was previously found to produce conformal coatings on surfaces by self-polymerization which are further capable of immobilizing biomolecules
bull In the method described here polydopamineserves as a conformal coating for the purposes of lipase immobilization onto MNPs Our results demonstrate that PD-MNPs exhibit high efficiency for lipase immobilization under aqueous conditions and the enzyme retains high activity after many cycles of magnetic separation and reuse
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Effect of temperature and pH on free and immobilized lipase activity- The effect of
temperature on the activity of free and immobilized lipase at pH 70 is shown in Figure1 The
activity of both free and immobilized lipase is not adversely affected at temperatures below 40degC
The relative activity of free lipase dropped significantly above 40deg C and decreased to just 265
of the initial activity at 60degC In comparison lipase immobilized on PD-MNPs retained 593 of
activity at 60degC A possible explanation for this is enhanced thermal stability in the immobilized
state leading to less denaturation of protein
bull The effect of pH on the relative activity of free and immobilized lipase is shown in Figure2
According to our data the activity of lipase immobilized on PDMNPs was retained throughout a
wider pH range compared to free enzyme At pH 6-7 free lipase was stable for short incubation
periods but was adversely affected at longer incubation times retaining only 60-70 of the activity
after 96 h incubation At pH 5 and 8 only 30- 40 of the activity of the free enzyme was retained
after 96 h and complete loss in activity was observed for free lipase upon incubation at pH 4 and 9
In contrast PD-lipase immobilized on MNPs retained more than 90 of activity at pH 6 and 7 and
even retained more than 50 of activity after 96 hours incubation at pH 4 5 and 8 The increased
stability of immobilized lipase may result from multipoint covalent linking between lipase and the
PD-MNPs which prevents lipase denaturation in acid or alkaline environments
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Recovery and reuse of immobilized lipase- The stability of immobilized lipase under conditions of repeated magnetic isolation and reuse was studied After each enzyme run the lipase containing PDMNPs were magnetically isolated and washed twice with hexane and ultrapure water to remove any remaining substrate and product species before the next experiment The residual activity of the immobilized lipase after each cycle was normalized to the initial value (the initial activity was defined as 100)
Figure- Magnetic isolation
of PD-MNP
Photographs of an aqueous
suspension of PD-MNPs
before (right) and after (left)
magnetic isolation
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
FREEZE DRYINGbull Removal of water from this mixture by lyophilization in the presence of stabilizing agents results in a
lyophilized enzyme that is stable at room temperature over extended periods of time
bull This invention also relates to an improved combination of stabilizing agents useful in a process for
lyophilizing an enzyme The combination is capable of providing enhanced stability of enzymes stored at
temperatures above freezing
bull Enzymes are sometimes unstable in aqueous systems at room temperature and so are typically stored
either in a frozen state or liquid at -20deg C (-70deg C in some cases) in the presence of stabilizers such as
glycerol that have low freezing points and low vapor pressures
METHOD-
bull Lyophilization is a drying process in which water molecules are removed from a frozen solution under a
vaccum
bull Lyophilization first requires that the aqueous solution be frozen and preferably quick-frozen One means
of quick-freezing a solution is immersing it into liquid nitrogen
bull A high vacuum is then applied to the frozen sample which results in sublimation or vaporization of ice
phase at subzero temperatures (primary drying)
bull Residual moisture can be subsequently removed by allowing the temperature to gradually rise (secondary
drying)
bull The resulting freeze-dried product is a dry crystalline substance or a powder Substances that are
lyophilized are often hygroscopic that is they will tend to absorb atmospheric moisture and lose their
stability In the presence of certain additives however it is possible to produce material that is not
hygroscopic
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
bull Stabilization and storage of materials using carbohydrates as cryoprotectants can be done
bull The formulation comprises a carrier protein one or more sugars one or more disaccharides
one or more disaccharide derivatives optionally one or more sugar polymers andor branched
sugar polymers The formulation may either be aqueous or substantially free of water (dried
formulation) The dried formulation may be reconstituted to the aqueous phase before use
bull Eg- A preferred formulation comprises the sugars trehalose and maltitol the sugar polymer
dextran along with a carrier protein preferably an albumin more preferably bovine serum
albumin (BSA) in a buffer solution Neither the BSA nor sugars alone confer the thermal
stability required for long-term storage
bull Enzymes that have been stabilized with sugars during lyophilization include
phosphofructokinase which was stabilized with glucose galactose maltose sucrose and
trehalose and alkaline phosphatase which was stabilized with mannitol lactose and
trehalose
bull Enzymes stabilized by the method of the present invention may be selected from the group
consisting of T7 RNA Polymerase AMV-Reverse Transcriptase RNase H etc
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
Conclusionbull Biocatalyst stability is a key issue for bioprocess economic viability
Industrial bioprocesses will keep increasing in the future as far as stable and robust biocatalysts are developed to withstand harsh conditions of operation
bull Research on intrinsically stable enzymes from extremophiles is very active and important outcomes for biocatalysis are expected in the near future
bull Gene cloning of such enzymes on mesophilic hosts and protein engineering of mesophilic enzymes are being exploited already by major enzyme companies to develop stable and robust biocatalysts It is foreseeable that in the near future most industrial biocatalysts will be products of genetic and protein engineering
bull Stabilization of biocatalysts by conventional means like immobilization and new methodologies like cross-linked enzyme crystals is broadening the scope of biocatalysis
bull Increased stability of enzymes in non-aqueous media is a relevant technological asset for the development of biocatalysis in organic synthesis
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464
REFERENCES
bull Books-bull Biotechnology- Expanding horizons BDSingh
2nd Edition Pg no- 650-677bull Immobilization of enzymes Joseacute M Guisaacuten - 2006
- 449 pages
bull Websites-bull Wu Y Wang YJ Lou GS Dai YY In situ preparation of magnetic
Fe3O4-chitosan nanoparticles for lipase immobilization by cross-linking and oxidation in aqueous solution BioresourceTechnol 2009 1003459-3464