eNanoMapper - enabling systems biology for nanosafety

eNanoMapper - enabling systems

biology for nanosafety

Egon Willighagen

Maastricht University, The Netherlands

@egonwillighagen

ORCID:0000-0001-7542-0286

Systems Biology in Nanosafety Research

Stockholm, 9-10 November 2015

#nanosysbio

(on behalf of...)

These slides are mine and may not fully reflect the opinion of all partners.

3

WP1:

Community

Outreach

WP2:

Ontology

Development

WP3: Data

Warehouse

Development

WP4: Analysis

& Modeling

WP5: Use

Case

Development

WP6:

Dissemination

& Training

WP7: Management

Design

Implementation Application

Communication

Workpackages

Ontology assembled from multiple sources

>6000 classes

Excel Files (NanoSafety Cluster)

11/9/15

Integration: Application Programming Interface (API)

Ola Spjuth, et al. JCIM, 2011, doi: 10.1021/ci200242c

Integration: Decision Support

Andón FT, Fadeel B; ''Programmed Cell Death: Molecular Mechanisms and Implications for Safety Assessment of Nanomaterials.''; Acc Chem Res, 2012

Systems Biology: Pathways

Dopamine metabolism

Library

NSC Newsletter Autumn 2015

● All eNanoMapper partners ● OpenTox - NM - Bioclipse integration

○ dr Nina Jeliazkova (IdeaConsult Ltd.) ○ dr Ola Spjuth (Uppsala University, GenettaSoft)

● WikiPathways project ○ Prof. Alex Pico's team, UCSF

● UM team and students ○ Bart Smeets, Freddie Ehrhart, Linda Rieswijk, Marloes

Poort, Lars Eijssen, Tina Kutmon, Ryan Miller, Anwesha Dutta, Prof. Chris Evelo

Acknowledgments

FP7-eNanoMapper

"eNanoMapper - A Database and Ontology Framework for Nanomaterials Design and Safety

Assessment”

• Grant Agreement: 604134 • Duration: 36 months (1 Feb 2014 – 31 Jan 2017)