The role of multi-level The role of multi-level modeling in modeling in understanding risk understanding risk factors for reported factors for reported rates of human cases of rates of human cases of Escherichia coli Escherichia coli O157:H7 O157:H7 Dr. David L. Pearl Dr. David L. Pearl Dept. of Population Medicine, University Dept. of Population Medicine, University of Guelph of Guelph Guelph, Ontario, Canada
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Dr. David L. Pearl Dept. of Population Medicine, University of Guelph Guelph, Ontario, Canada
The role of multi-level modeling in understanding risk factors for reported rates of human cases of Escherichia coli O157:H7. Dr. David L. Pearl Dept. of Population Medicine, University of Guelph Guelph, Ontario, Canada. Outline. Review epidemiology of E. coli O157:H7. - PowerPoint PPT Presentation
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The role of multi-level modeling in The role of multi-level modeling in understanding risk factors for understanding risk factors for
reported rates of human cases of reported rates of human cases of Escherichia coliEscherichia coli O157:H7 O157:H7
Dr. David L. PearlDr. David L. Pearl
Dept. of Population Medicine, University of GuelphDept. of Population Medicine, University of Guelph
Guelph, Ontario, CanadaGuelph, Ontario, Canada
OutlineOutline
• Review epidemiology of E. coli O157:H7.
• Utility of multi-level modeling for zoonotic diseases in human populations.
• Multi-level study of E. coli O157:H7 in Alberta, Canada.
• Future of multi-level modeling for E. coli O157:H7 and other zoonoses.
Epidemiology of Epidemiology of E. coliE. coli O157:H7O157:H7
Nature of diseaseNature of disease
• Mild diarrhea to hemorrhagic diarrhea to HUS.• HUS – anemia, thrombocytopenia, renal failure (2-
10% of cases).• Highest incidence of illness in children less than
five and elderly.• Increased risk of exposure if rural vs. urban. • Greater incidence of disease in summer vs. other.• Asymptomatic and intermittent shedding in cattle
(major reservoir).
More than a “Hamburger More than a “Hamburger Disease”Disease”
• Meat• Waterborne• Cross-contamination in food
preparation• Contamination of produce
with ruminant feces • Person-to-person • Animal-to-person*• Other foods of animal origin
Canadian statisticsCanadian statistics
• 3-5 cases per 100 000 population.
• 365 hospitalizations per 1000 cases .
• 39 deaths per 1000 cases.
• 1 reported case for 4-8 symptomatic cases (Ontario).*
E. coliE. coli O157:H7 & Alberta O157:H7 & Alberta
• Crude rates higher than national average. • > 9 cases/100 000 from 2000-2002.
• Southern RHAs report highest rates.
• Province only reports community outbreaks to federal government (few and small).
Passive surveillance in AlbertaPassive surveillance in Alberta
• Alberta Health and Wellness collects Notifiable Disease Reports – (17 RHAs)
• Provincial Laboratory for Public Health (Microbiology) performs PFGE
Spatial clusteringSpatial clustering
• Spatial scan statistics show clustering in the south.
• Cluster location varies depending on use of sporadic vs. all cases.
• More complex than just issue of cattle density.
Pearl et al., 2006
Utility of multi-level modeling Utility of multi-level modeling for zoonotic diseasesfor zoonotic diseases
Multi-level modelingMulti-level modeling
• Hierarchical or random effects models.
• Statistical model including fixed and random effects.
• Fixed effects represent the mean effects typically seen in ordinary regression models.
• Random effects adjust for auto-correlated data while allowing the proper estimation of variables from different hierarchical levels.
• Diez-Roux (2000) emphasized multilevel modeling in public health research.
• Already common in veterinary epidemiology to account for farm-level clustering.
• Similar approaches used to account for spatial clustering among counties to investigate role of agriculture on rates of disease from E. coli O157 (Michel et al. 1999; Valcour et al. 2002).
Zoonoses and multi-level modelingZoonoses and multi-level modeling
• Community-level factors – migration patterns, health policy and legislation, socio-economic factors as contextual variables.
• Regional factors – type of water-shed, density of animal reservoir.
Multi-level study of Multi-level study of E. coliE. coli O157:H7 in Alberta, CanadaO157:H7 in Alberta, Canada
(Pearl et al., 2009)(Pearl et al., 2009)
ObjectivesObjectives
1. Estimate the association between socio-economic and agricultural variables related to income, migration, degree of integration with urban core, aboriginal status, and cattle density on rates of E. coli O157:H7 in Albertan communities.
2. Determine the impact of using all available data or only sporadic data on the associations observed.
Study Data - Alberta 2000-2002Study Data - Alberta 2000-2002
• 875 cases recorded by passive surveillance• 826 human cases examined using PFGE• NDR provided spatial, temporal, and epidemiological data• 2001 Canada Census location of CSD centroids and socio-
agricultural data • Based on review of NDR 78.9 % of cases were sporadic
(14 community outbreaks & 55 household outbreaks)
Hierarchical structure of dataHierarchical structure of data
C e n su s S u b d iv is io n (C S D )
C o n so lid a te d C e n sus S u b d iv isio n (C C S )
C e n su s D iv is io n (C D )
Variables available through the Variables available through the 2001 Canada Census2001 Canada Census
1. Cattle density (CCS) – forced into all models
2. Metropolitan influenced zones (CSD)
3. Percent movers (CSD)
4. High aboriginal population (CSD)
5. Percent low income households (CSD)*
* Non-significant
Statistical model buildingStatistical model building1. Models: Negative binomial models & Poisson models
with random effects.2. Outcome and exposure - case counts and expected
counts, respectively.3. Methods: Adaptive quadrature for multi-level models