DNA Technologies and Genomics (DNA 기기기 기기기기 ) Chapter 18
DNA Technologies and Genomics(DNA 기술과 유전체학 )
Chapter 18
단백질체학에서의 단백질 미세배열 .
그림 18.1. 살인사건 해결의 실마리가 되었던 Snowball 이름의 고양이 .
Biotechnology
Biotechnology• Any technique applied to biological systems to
manipulate processes
DNA technologies isolate, purify, analyze and manipulate DNA sequences• DNA fingerprinting used in forensics
Genetic engineering uses DNA technologies to alter genes for practical purposes
18.1 DNA Cloning
Bacterial enzymes (restriction endonucleases) form the basis of DNA cloning
Bacterial plasmids illustrate the use of restriction enzymes in cloning
DNA libraries contain collections of cloned DNA fragments
Polymerase chain reaction (PCR) amplifies DNA in vitro
Recombinant DNA
DNA cloning provides many copies of a gene• Used for research or manipulation
Recombinant DNA contains DNA from multiple sources joined together• Recombinant plasmids containing gene of
interest can be cloned in E. coli
그림 18.2. DNA 절편을 세균 플라스미드에 클로닝하는 방법 .
Endonucleases
Restriction enzymes (endunucleases) cut DNA at specific sequences in restriction sites• Restriction fragments ( 제한효소절편 ) result • Sticky ends ( 점착성 말단 ) have unpaired bases
at cuts which will hydrogen bond• Ligase stitches together paired sticky ends
그림 18.3. 제한효소 EcoRI 을 이용한 재조합 DNA 의 형성 .
Plasmid Cloning Vectors
Engineered to contain gene of interest and sorting genes• Sorting genes identify E. coli with cloned plasmid• E. coli with appropriate plasmid are ampicillin
resistant and blue-white screened on X-gal
그림 18.4. 플라스미드 벡터에 유전자 클로닝 .
DNA Hybridization ( 혼성화 )
Uses nucleic acid probe to identify gene of interest in set of clones• Probe has tag for detection• Identified colony produces large quantities of
cloned gene
그림 18.5. 특정 DNA 서열을 식별하기 위한 DNA 혼성화 .
DNA Libraries
Genomic libary ( 유전체 라이브러리 )• Clones containing every sequence in a genome• Used to isolate genes or DNA sequences
Complementary DNA (cDNA) library • DNA sequences made from expressed RNA• mRNA extracted from cell• Reverse transcriptase makes cDNA• Removes introns for genetic engineering
Polymerase Chain Reaction
Polymerase chain reaction (PCR) (중합효소연쇄반응 )• Produces many sequence copies without host
cloning• Amplifies known DNA sequences for analysis• Only copies sequence of interest • Primers bracket sequence
Agarose gel electrophoresis • Separates fragments by size and charge• Gel molecular sieve
그림 18.6. 중합효소연쇄반응
(PCR).
그림 18.7. 아가로오스 겔 전기영동에 의한 DNA 절편 분리 .
18.2 Application of DNA Technologies
DNA technologies are used in molecular testing for many human genetic diseases
DNA fingerprinting used to identify human individuals and individuals of other species
Genetic engineering uses DNA technologies to alter the genes of a cell or organism
DNA technologies and genetic engineering are a subject of public concern
RFLPs
Restriction fragment length polymorphisms (제한효소절편길이다형성 )• DNA sequence length changes due to varying
restriction sites from same region of genome• Sickle cell anemia has RFLPs
Southern blot analysis uses electrophoresis, blot transfer, and labeled probes to identify RFLPs• Alternative is PCR and electrophoresis
그림 18.8. β- 글로빈 유전자의 제한효소 절단위치의 차이 .
그림 18.9. 서던 블랏 분석법 .
DNA Fingerprinting ( 지문감식 )
Distinguishes between individuals• Uses PCR at multiple loci within genome• Each locus heterozygous or homzygous for short
tandem repeats (STR)
PCR amplifies DNA from STR• Number of gel electrophoresis bands shows
amplified STR alleles• 13 loci commonly used in human DNA
fingerprinting
Forensics and Ancestry ( 법의학과 가계분석 )
Forensics compares DNA fingerprint from sample to suspect or victim• Usually reported as probability DNA came from
random individual
Common alleles between children and parents used in paternity tests• Same principle used to determine evolutionary
relationships between species
그림 18.10. PCR 를 이용한 STR 유전자 좌에 대한 DNA
지문분석 .
Genetic Engineering
Transgenic organisms • Modified to contain genes from external source
Expression vector has promoter in plasmid for production of transgenic proteins in E. coli• Example: Insulin• Protocols to reduce risk of escape ( 노출 위험성을 최소화하는 안전성 지침 )
Animal Genetic Engineering
Transgenic animals used in research, correcting genetic disorders, and protein production
Germ-line cell ( 생식세포 ) transgenes can be passed to offspring (somatic can not)• Embryonic germ-line cells cultured in quantity,
made into sperm or eggs• Stem cells
그림 18.11. 배아 생식세포를 이용하여 생쥐의 배아에 유전자 도입
배아에서 채취한 생식세포에 주사 또는 전기천공법으로 원하는 유전자를 주입한다 .
유전자가 주입된 세포를 배양해 순수 형질전환 세포집단을 얻는다
형질전환 세포를 초기배아 ( 포배 ) 에 주입한다 .
배아를 대리모에 착상시킨다 .
배아가 성장하여 자손이 태어난다 .
자손 생쥐를 교배한다 .
Genetically Engineered Mouse
그림 18.12. 집쥐의 성장호르몬 유전자를 주입하여 유전자 조작된 거대 생쥐 ( 우측 ).
Gene Therapy
Attempts to correct genetic disorders• Germ-line gene therapy ( 생식세포 유전자치료 )
can’t be used on humans• Somatic gene therapy ( 체세포 유전자치료 )
used in humans
Mixed results in humans• Successes for ADA ( 탈아미노효소 결핍증 ) and
sickle-cell• Deaths from immune response and leukemia-like
conditions ( 백혈병과 비슷한 증세 )
Animal Genetic Engineering
“Pharm” animals produce proteins for humans • Usually produced in milk for harmless extraction
Cloned mammals produced by implantation of diploid cell fused with denucleated egg cell• Low cloning success rate• Increased health defects in clones• Gene expression regulation abnormal
Cloned Sheep
“Dolly”
그림 18.13. 복제양 돌리 .
Plant Genetic Engineering
Has been highly successful• Increased resistance to environmental effects
and pathogens• Plant “pharms” and increased nutrition• Callus formation
Ti (tumor inducing) plasmid from crown gall disease ( 근두암종병 ) used as vector• Transforming DNA (T DNA) genes expressed
Crown Gall Tumor
그림 18.14. 캘리포니아 후추나무의 근두암종 .
그림 18.15. 뿌리혹세균의 Ti 플라스미드를 이용한 식물 형질전환 .
GMO Concerns
Genetically modifed organisms (GMOs) are transgenic and raise certain concerns• Effect on environment• Interbreeding with or harming natural species
Cartagena Protocol on Biosafety ( 생물안전성에 관한 카르타지나 협정 ) provides rules on GMOs • Stringent laboratory standards for transgenic
organisms• No bacterial “escapes” from labs
GMO Tobacco
그림 18.16. 반딧불이의 발광효소 유전자를 도입한 담배 .
GMO Rice
그림 18.17. 베타 - 카로틴을 함유하도록 유전자 변형된 쌀 .
18.3 Genome Analysis
DNA sequencing techniques are based on DNA replication
Structural genomics determines the complete DNA sequence of genomes
Functional genomics focuses on the functions of genes and other parts of the genome
18.3 (cont.)
Studying the array of expressed proteins is the next level of genomic analysis
Systems biology is the study of the interactions between all the components of an organism
Genome Analysis
Genomics • Analyzes organization of complete genome and
gene networks
Human Genome Project took 13 years (2003)• Revolutionizing biology and evolutionary
understanding
DNA Sequencing
Used for small DNA sequences to genomes
Dideoxy (Sanger) method of sequencing• Dideoxyribonucleotides have –H bound to 3’ C
instead of –OH
• DNA polymerases place dideoxyribonucleotides in DNA, stops replication
• Polyacrylamide gel separates strands varying by one nucleotide
그림 18.18. DNA 염기서열 결정을 위한 dideoxy (Sanger)
방법 .
Genomic Analyses (1)
Structural genomics • Sequence genomes to locate genes and funtional
sequenes
Functional genomics • Studies functions of genes and other parts of
genome
Genomic Analyses (2)
Whole-genome shotgun method • Breaks genome into many DNA fragments
• Computers assemble genome based on overlapping sequences
그림 18.19. 전체 유전체 샷건 염기서열 결정법 .
Functional Genomics
Bioinformatics • Analysis of large data sets
• Uses biology, computer science, mathematics
• Identify open reading frames with start and stop codons, sophisticated algorithms for introns
• Sequence similarity searches
Genomics revealed many unknown genes• Many genes similar between evolutionarily distant
organisms
Human Genome
3.2 billion (32 억 ) base pairs
Between 20,000 and 25,000 genes
About 100,000 proteins• Due to alternative splicing and protein processing
Protein coding only 2% of genome• 24% introns
• 50% repeat sequences of no known function
Genome Analysis
Data mining• Gene functions
• Genome organization
• Expression controls
Comparative genomics (with other organisms)• Tests evolutionary hypotheses
DNA Microarrays
DNA microarrays (chips) • About 20 nucleotide-long DNA probe sequences
• cDNA probes made from isolated mRNA
• Probes red or green from different cell states
• cDNA from each cell state hybridize with complementary sequences on chip
Used to determine how expression changes in normal and cancer cells• Also used to detect mutations
그림 18.20. DNA microarray 분석 .
Proteomics
Proteome • Complete set of proteins expressed by genome
• Larger than genome in eukaryotes
Proteomics (study of proteome)• Protein microarrays (chips) similar to DNA
microarrays
• Use antibodies to bind to proteins
Systems Biology
Studies organisms as a whole• Investigates networks of genes, proteins, and
biochemistry
Combines genomics and proteomics with response to environment• Complex data analysis and computer models
limiting factors