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Disclaimer: Please note that the data presented here is preliminary and subject to revision.
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Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Jul 12, 2020

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Page 1: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Disclaimer:

Please note that the data presented here is preliminaryand subject to revision.

Page 2: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in Invasions:genetic patterns & evolutionary consequences

Katrina Dlugosch • Ingrid ParkerUC Santa Cruz

Page 3: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founder Effects on Genetic Diversity

Native Range

Page 4: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Native Range Invaded Range

Founder Effects on Genetic Diversity

Demographic bottlenecks = Genetic bottlenecks

Page 5: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Native Range

Introduction Growth Spread

Invaded Range

Founder Effects on Genetic Diversity

Page 6: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in InvasionsOutline

Genetic patternsLiterature review: within-population diversity

How common are bottlenecks?Why/why not… multiple introductions?

Evolutionary consequencesHypericum canariense: single introductions

Quantitative trait evolution

Conservation Implications

Page 7: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Literature Review• Successful human-mediated introductions• Direct comparisons to source regions• No hybrids

Page 8: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Literature Review• Successful human-mediated introductions• Direct comparisons to source regions• No hybrids

• Nuclear markers: Expected Heterozygosity (H) , Allelic Richness (A)

• Per locus values averaged over loci and populations

Page 9: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Literature Review• Successful human-mediated introductions• Direct comparisons to source regions• No hybrids

• Nuclear markers: Expected Heterozygosity (H) , Allelic Richness (A)

• Per locus values averaged over loci and populations

Data from…62 species (58 studies)

13 Plants2 Fungi

48 Animals

Page 10: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Literature Review• Successful human-mediated introductions• Direct comparisons to source regions• No hybrids

• Nuclear markers: Expected Heterozygosity (H) , Allelic Richness (A)

• Per locus values averaged over loci and populations

Data from…62 species (58 studies)

13 Plants2 Fungi

48 Animals: 7 birds 1 reptile6 fish 2 amphibians 6 mammals 13 insects3 crustaceans 5 mollusks3 annelids 1 tunicate

Page 11: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations[(introduced-source)/source]

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6-0.8-10

5

10

15

20

25

30

35

40

% of Species

Page 12: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Page 13: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Bromustectorum

Page 14: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Page 15: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

What determines diversity loss?

We examined:

• Historical evidence for multiple introductions

• Time since initial introduction

Page 16: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

What determines diversity loss?

We examined:

• Historical evidence for multiple introductions

• Time since initial introduction

Page 17: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Single vs. Multiple Introductions

-1

-0.5

0

0.5

1

‘Single’ Multiple

Loss of Diversity

Prediction…

Page 18: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

-1

-0.5

0

0.5

1

‘Single’ Multiple

Loss of A

-1

-0.5

0

0.5

1

Loss of He

‘Single’ Multiple

Single vs. Multiple Introductions

Reality…

Page 19: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

What determines diversity loss?

We examined:

• Historical evidence for multiple introductions

• Time since initial introduction

Page 20: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Time Since Initial Introduction

-0.2

0

0.2

0.4

0.6

0.8

0 20 40 60 80 100 120 140 160

Years Since Initial Introduction

Loss of A

Page 21: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

-0.2

0

0.2

0.4

0.6

0.8

0 20 40 60 80 100

Years Since Initial Introduction

Loss of A Multiple introductions / gene flowreplenish diversity over time

Time Since Initial IntroductionPrediction…

Page 22: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

-0.2

0

0.2

0.4

0.6

0.8

0 20 40 60 80 100

Years Since Initial Introduction

Loss of A

Time Since Initial Introduction

Multiple introductions / gene flowreplenish diversity over time

Drift / directional selectionerode diversity over time

Prediction…

Page 23: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

-0.2

0

0.2

0.4

0.6

0.8

0 20 40 60 80 100 120 140 160

Years Since Initial Introduction

Loss of A

Time Since Initial Introduction

Reality…

Page 24: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

-0.2

0

0.2

0.4

0.6

0.8

0 20 40 60 80 100 120 140 160

Years Since Initial Introduction

Loss of A

P = 0.03r2 = 0.22

Time Since Initial Introduction

Page 25: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in InvasionsOutline

Genetic patternsLiterature review: within-population diversity

Bottlenecks often occur during invasionBenefits of multiple introductions take time

Evolutionary consequencesHypericum canariense: single introductions

Quantitative trait evolution

Conservation Implications

Page 26: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in InvasionsOutline

Genetic patternsLiterature review: within-population diversity

Bottlenecks often occur during invasionBenefits of multiple introductions take time

Evolutionary consequencesHypericum canariense: single introductions

Quantitative trait evolution

Conservation Implications

Page 27: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Hypericum canariense (Canary Island St. John’s wort)

Page 28: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Native Range: The Canary Islands

Page 29: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

EL HIERRO

LA PALMA

LA GOMERA

TENERIFE

GRAN CANARIA

FUERTEVENTURA

LANZAROTE

3

21

3

1 2

12 3 4 5

66

5421

3

1

2 34 5

6

1213

14

78

9

1011 15

20 km

Native Range: The Canary Islands

Page 30: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

EL HIERRO

LA PALMA

LA GOMERA

TENERIFE

GRAN CANARIA

FUERTEVENTURA

LANZAROTE

3

21

3

1 2

12 3 4 5

66

5421

3

1

2 34 5

67

8

9

1011

1213

1415

20 km

Native Range: The Canary Islands

Page 31: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Victoria

W. Australia

Maui

San Mateo Co.San Diego Co.

Single introductionsEach < 50 years old

H. canariense Invasions

Page 32: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

H. canariense Invasions

Page 33: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

H. canariense: San Mateo Co. California

Page 34: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0.00

0.05

0.10

0.15

0.20

0.25

Tenerife Populations Invasions

AFLP Variation (expected heterozygosity He)

Page 35: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Page 36: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Quantitative Trait Evolution

Page 37: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

150

175

200

225

250

Tenerife Maui SD SM

***

Flowering Date (Julian day)

Native

Invading

*** P < 0.001

day

Page 38: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Flowering Date (Julian day)

175

200

225

250

20 25 30 35 40

NativeInvading

LATITUDE (degrees N)

InvasionsP = 0.002r2

adj = 0.30FamilyMeanDate

Page 39: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Page 40: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

0

5

10

15

20

25

30

35

40

Magnitude of Genetic Bottlenecks

Proportional Loss of Diversity in Introduced Populations

%

Heterozygosity

Allelic Richness

Loss of diversityGain in diversity

-0.4 -0.2 0.2 0.4 0.6 0.8 1-0.6 1.2-1-1.4 -1.2

Page 41: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Quantitative Trait Evolution

• Latitudinal cline in phenology

• Higher growth rates

• Loss of inbreeding depression

Page 42: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in InvasionsOutline

Genetic patternsLiterature review: within-population diversity

Bottlenecks often occur during invasionBenefits of multiple introductions take time

Evolutionary consequencesHypericum canariense: single introductions

Rapid evolution of quantitative traits

Conservation Implications

Page 43: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Founding Events in InvasionsOutline

Genetic patternsLiterature review: within-population diversity

Bottlenecks often occur during invasionBenefits of multiple introductions take time

Evolutionary consequencesHypericum canariense: single introductions

Rapid evolution of quantitative traits

Conservation Implications

Page 44: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Conservation Implications

Invaders do experience bottlenecks

Page 45: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Conservation Implications

Invaders do experience bottlenecks

BUT quantitative traits retainadaptive potential

Page 46: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Conservation Implications

Need early detection and eradication infrastructure for isolated populations

BUT quantitative traits retainadaptive potential

Invaders do experience bottlenecks

Page 47: Disclaimer: Please note that the data presented here is ...Magnitude of Genetic Bottlenecks Proportional Loss of Diversity in Introduced Populations % Heterozygosity Allelic Richness

Acknowledgements

FundingUSDACA Native Plant SocietySTEPS Institute

ConversationExtended Parker LabGrant PogsonEllen SimmsJohn Thompson

InvitationTom Smith &Louis Bernatchez

Hypericum projectChris Bella, Pat Bily, Meghan Bishop, Mike Bonsall, Emme Bruns, Alex Bullis, Sara Crockett, Adrian Deveny, Jessica Grice, David Hamburger, Adrianne Haynes, Cynthia Hays, Kendra Hauser-Seaman, Chris Heintzelman, Beth Howard, Becky Hufft Kao, Andrea Jani, George Katibah, Nell Kolden, Jeremy Mason-Herr, Warren McCord, Justin Melhaff, Ian Miller, Ari Miller-Rhoads, Sara Mora, Raquel Paniagua, Neil Petersen, David Pivorunas, Mary Platter-Reiger, Fahim Popalzai, Ann Rich, James Richardson, Tzong Tzu Rogers, Will Satterthwaite, Annie Shattuck, Kate Siegfried, Jim Sowerwine, Kim and Forrest Starr, Jodi Stewart, Ryan Taylor, Erin Tempero, Jim Velzy, John Wade, Rebekah Weber, Emily Williams, Ryan Wilson, Nick Wolf, Peter Zee.