tures online at: http://qc.chem.nagoya-u.ac.jp/presentations
Jun 26, 2015
All lectures online at: http://qc.chem.nagoya-u.ac.jp/presentations.html
2
Density-Functional Tight-Binding (DFTB) as fast approximate DFT method
Helmut Eschrig Gotthard Seifert Thomas Frauenheim Marcus Elstner
Lecture II:Introduction to the Density-Functional Tight-Binding (DFTB) Method
3
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
4
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
55
Lecture II 1. Tight-Binding
Resources1. http://www.dftb.org
2. DFTB Porezag, D., T. Frauenheim, T. Köhler, G. Seifert, and R. Kaschner, Construction of tight-binding-like potentials on the basis of density-functional theory: application to carbon. Phys. Rev. B, 1995. 51: p. 12947-12957.
3. DFTB Seifert, G., D. Porezag, and T. Frauenheim, Calculations of molecules, clusters, and solids with a simplified LCAO-DFT-LDA scheme. Int. J. Quantum Chem., 1996. 58: p. 185-192.
4. SCC-DFTB Elstner, M., D. Porezag, G. Jungnickel, J. Elsner, M. Haugk, T. Frauenheim, S. Suhai, and G. Seifert, Self-consistent-charge density-functional tight-binding method for simulations of complex materials properties. Phys. Rev. B, 1998. 58: p. 7260-7268.
5. SCC-DFTB-D Elstner, M., P. Hobza, T. Frauenheim, S. Suhai, and E. Kaxiras, Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment. J. Chem. Phys,, 2001. 114: p. 5149-5155.
6. SDFTB Kohler, C., G. Seifert, U. Gerstmann, M. Elstner, H. Overhof, and T. Frauenheim, Approximate density-functional calculations of spin densities in large molecular systems and complex solids. Phys. Chem. Chem. Phys., 2001. 3: p. 5109-5114.
7. DFTB3 Gaus, M.; Cui, C.; Elstner, M. DFTB3: Extension of the Self-Consistent-Charge Density-Functional Tight-Binding Method (SCC-DFTB). J. Chem. Theory Comput., 2011. 7: p. 931-948.
6
Standalone fast and efficient DFTB implementation with several useful extensions of the original DFTB method. It is developed at the Bremen Center for Computational Materials Science (Prof. Frauenheim, Balint Aradi) and is the successor of the old Paderborn DFTB and Dylax codes. Free for non-commercial use.
DFTB+ as part of Accelrys' Materials Studio package, providing a user friendly graphical interface and the possibility to combine DFTB with other higher or lower level methods.
DFTB integrated in the ab initio DFT code deMon
DFTB in the Gaussian code
Amber is a package of molecular simulation programs distributed by UCSF, developed mainly for biomolecular simulations. The current version of Amber includes QM/MM support, whereby part of the system can be treated quantum mechanically, and DFTB is among the quantum mechanical methods available. Amber also has a stand-alone (pure QM) implementation.
CHARMm (Chemistry at HARvard Macromolecular Mechanics)
DFTB integrated in the Amsterdam Density Functional (ADF) program suite.
DFTB+
DFTB+/Accelrys
deMon
GAUSSIAN G09
AMBER
CHARMm
ADF
Implementations
Lecture II 1. Tight-Binding
7
• Tight binding (TB) approaches work on the principle of treating electronic wavefunction of a system as a superposition of atom-like wavefunction (known to chemists as LCAO approach)
• Valence electrons are tightly bound to the cores (not allowed to delocalize beyond the confines of a minimal LCAO basis)
• Semi-empirical tight-binding (SETB): Hamiltonian Matrix elements are approximated by analytical functions (no need to compute integrals)
• TB energy for N electrons, M atoms system:
• This separation of one-electron energies and interatomic distance-dependent potential vj,k constitutes the TB method
Tight-Binding
Lecture II 1. Tight-Binding
8
• ei are eigenvalues of a Schrodinger-like equation
• solved variationally using atom-like (minimum, single-zeta) AO basis set, leading to a secular equation:
where H and S are Hamiltonian and overlap matrices in the basis of the AO functions. In orthogonal TB, S = 1 (overlap between atoms is neglected)
• H and S are constructed using nearest-neighbor relationships; typically only nearest-neighbor interactions are considered: Similarity to extended Hückel method
Tight-Binding
Lecture II 1. Tight-Binding
9
• Based on approximation by W. Wolfsberg and L. J. Helmholz (1952) H Ci = i S Ci
• H – Hamiltonian matrix constructed using nearest neighbor relationships
• Ci – column vector of the i-th molecular orbital coefficients
• i – orbital energy
• S – overlap matrix
• H - choose as a constant – valence shell ionization potentials
• H = K S (H + H)/2
• K – Wolfsberg Helmholz constant, typically 1.75
Extended Huckel (EHT) Method
Lecture II 1. Tight-Binding
Categories of TB approaches
10
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
Slater-Koster (SK) Approximation (I)
11
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
SK Approximation (II)
12
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
SK Approximation (III)
13
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
SK Approximation (IV)
14
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
15
SK Tables
Source: http://beam.acclab.helsinki.fi/~akrashen/esctmp.html
Lecture II 1. Tight-Binding
16
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
17
DFTB MethodQuick review I
Taken from Oliviera, Seifert, Heine, Duarte, J. Braz. Chem. Soc.
20, 1193-1205 (2009)
...open access
Thomas Heine
Helio Duarte
18
DFTB MethodQuick review II
Density Functional Theory (DFT)
2 3
1
3 3
, 1
1
'1'
2 '
'1 1 '
2 ' 2
M
i i ext ii
N
xc
M
i i repi
rE n v r d r
r r
Z Zr rE d rd r
r r R R
n E
at convergence:
Various criteria for convergence possible: • Electron density• Potential• Orbitals• Energy• Combinations of above quantities
Walter Kohn/John A. Pople 1998
19
DFTB MethodQuick review III
Phys. Rev. B, 39, 12520 (1989)
Foulkes + Haydock Ansatz
20
Self-consistent-charge density-functional tight-binding (SCC-DFTB)
M. Elstner et al., Phys. Rev. B 58 7260 (1998)
Approximate density functional theory (DFT) method!
Second order-expansion of DFT energy in terms of reference density r0 and charge fluctuation r1 ( ≅ r r0 + r1) yields:
Density-functional tight-binding (DFTB) method is derived from terms 1-6 Self-consistent-charge density-functional tight-binding (SCC-DFTB) method is derived from terms 1-8
o(3)
Lecture II DFTB
21
DFTB and SCC-DFTB methods
where ni and i — occupation and orbital energy ot the ith Kohn-Sham
eigenstate Erep — distance-dependent diatomic repulsive potentials
qA — induced charge on atom A
AB — distance-dependent charge-charge interaction functional; obtained from chemical hardness (IP – EA)
Lecture II DFTB
22
DFTB method Repulsive diatomic potentials replace usual nuclear repulsion
energy
Reference density 0 is constructed from atomic densities
Kohn-Sham eigenstates i are expanded in Slater basis of valence
pseudoatomic orbitals i
The DFTB energy is obtained by solving a generalized DFTB eigenvalue problem with H0 computed by atomic and diatomic DFT
Lecture II DFTB
23
Traditional DFTB concept: Hamiltonian matrix elements are approximated to two-center terms. The same types of approximations are done to Erep.
From Elstner et al., PRB 1998
0
0
(Density superposition)
(Potential superposition)
eff eff A B
eff eff A eff B
V V
V V V
A B D
C
A
B
DC
Situation I Situation II
Both approximations are justified by the screening argument: Far away, neutral atoms have no Coulomb contribution.
Approximations in the DFTB Hamiltonian
Lecture II DFTB
SCC-DFTB matrix elements
24
LCAO ansatz of wave function
Rri
i c
secular equations
0
SHc ii
variational
principlepseudoatomic orbital
Atom 1 – 4 are the same atom & have only s shell
1
4
2
3
r12
r23
r14
r34
r13
r24
How to construct?
two-center approximationnearest neighbor off-diagonal
elements only
Hamiltonian Overlap
pre-computed parameter• Reference Hamiltonian
H0
• Overlap integral Sμν
SCC-DFTB matrix elements
25
LCAO ansatz of wave function
Rri
i c
secular equations
0
SHc ii
variational
principlepseudoatomic orbital
H11
H22
H33
H44
Atom 1 – 4 are the same atom & have only s shell
Diagonal term
Orbital energy of neutral free atom(DFT calculation)
1
4
2
3
r12
r23
r14
r34
r13
r24
Hamiltonian Overlap
qH2
1
Charge-charge interaction function
Induced charge
SCC-DFTB matrix elements
26
LCAO ansatz of wave function
Rri
i c
secular equations
0
SHc ii
variational
principlepseudoatomic orbital
H11
H22
H33
H41 H44
Atom 1 – 4 are the same atom & have only s shell
1
4
2
3
r12
r23
r14
r34
r13
r24
r14
Two-center integral
qSHH2
10
Charge-charge interaction function
Induced charge
Hamiltonian Overlap
Lookup tabulated H0
and S at distance r
r14
SCC-DFTB matrix elements
27
LCAO ansatz of wave function
Rri
i c
secular equations
0
SHc ii
variational
principlepseudoatomic orbital
H11
H22
H33
H41 H43 H44
Atom 1 – 4 are the same atom & have only s shell
1
4
2
3
r12
r23
r34
r13
r24
r34
Two-center integral
qSHH2
10
Charge-charge interaction function
Induced charge
Hamiltonian Overlap
Repeat until building off-diagonal term
Lookup tabulated H0
and S at distance r
28
DFTB parameters
Lecture II DFTB
DFTB repulsive potential Erep
Which molecular systems to include?
Development of (semi-)automatic fitting:• Knaup, J. et al.,
JPCA, 111, 5637, (2007)
• Gaus, M. et al., JPCA, 113, 11866, (2009)
• Bodrog Z. et al., JCTC, 7, 2654, (2011)
29
Lecture II DFTB
30
Additional induced-charges term allows for a proper description of charge-transfer phenomena
Induced charge qA on atom A is determined from Mulliken
population analysis
Kohn-Sham eigenenergies are obtained from a generalized, self-consistent SCC-DFTB eigenvalue problem
SCC-DFTB method (I)
Lecture II DFTB
31
SCC-DFTB method (II)
Basic assumptions:• Only transfer of net charge between atoms• Size and shape of atom (in molecule) unchanged
Only second-order terms (terms 7-8 on slide 16):
Lecture II DFTB
32
SCC-DFTB method (III)
Lecture II DFTB
33
SCC-DFTB method (IV)
Several possible formulations for gab: Mataga-Nishimoto < Klopmann-Ohno < DFTB
Klopmann-Ohno:
Lecture II DFTB
34
Gradient for the DFTB methods
The DFTB force formula
The SCC-DFTB force formula
computational effort: energy calculation 90%
gradient calculation 10%
Lecture II DFTB
35
Spin-polarized DFTB (SDFTB)
Lecture II DFTB
for systems with different and spin densities, we have total density = + magnetization density S = -
2nd-order expansion of DFT energy at (0,0) yields
The Spin-Polarized SCC-DFTB (SDFTB) method is derived from terms 1-9
o(3)
36
where pA l — spin population of shell l on atom A
WA ll’ — spin-population interaction functional
Spin populations pA l and induced charges qA are obtained from Mulliken population analysis
Spin-polarized DFTB (SDFTB)
Lecture II DFTB
37
Spin-polarized DFTB (SDFTB)
Lecture II DFTB
Kohn-Sham energies are obtained by solving generalized, self-consistent SDFTB eigenvalue problems
where
M,N,K: indexing specific atoms
38
SCC-DFTB w/fractional orbital occupation numbers
12
2tot i i repi
E f E q q
0vi iv
c H S Fractional occupation numbers fi of Kohn-Sham eigenstates replace integer ni
TB-eigenvalue equation
Lecture II DFTB
E
2fi0 1 2
m
Finite temperature approach (Mermin free energy EMermin)
1
exp / 1ii B e
fk T
2 ln 1 ln 1e B i i i ii
S k f f f f
Te: electronic temperatureSe: electronic entropy
0 1
2N
repi i i i
i
EH H SF f c c q q
SR R R R
0 1if
Atomic force
M. Weinert, J. W. Davenport, Phys. Rev. B 45, 13709 (1992)
EMermin = Etot - TeSe
39
Fermi-Dirac distribution function: Energy derivative for Mermin Free Energy
M. Weinert, J. W. Davenport, Phys. Rev. B 45, 13709 (1992)
elect TSHF pulay charge TS
i ii
i ii i
i i
ii
e
ii
i
i
F F F F F
fx
f
T
fx x
f
S
f
x
x
x
electHF pulay charge
i ii i i i
i i i
F F F F
ff f
x x x
Correction term arising from Fermi distribution function cancels out
Lecture II DFTB
0 1 2 3 4 50
20
40
60
80
40
0 1 2 3 4 50
20
40
60
80
0 1 2 3 4 50
20
40
60
80
0 1 2 3 4 50
20
40
60
80
0 1 2 3 4 50
20
40
60
80
Time[ps] Time[ps]Time[ps]
Te= 0K
Te= 1500K
Te= 10kK
Te=0 K always yields SCC convergence problemSCC iterations(time)Maximum iteration number is 70
0 1 2 3 4 50
20
40
60
80
0 1 2 3 4 50
20
40
60
800 2 4
0
20
40
60
80
0 1 2 3 4 50
20
40
60
80(A) H10C60 Fe38 (B) Fe13C10 (C) Fe6C2
kbTe(10kK) ~0.87 eV~half-width of 3d band in Fe38
DFTBLecture II
41
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
Bond breakingLecture II
SCC-DFTB and SDFTB Dissociation of H2+
Bond breakingLecture II
SCC-DFTB and SDFTB Dissociation of H2+
Bond breakingLecture II
SCC-DFTB and SDFTB Dissociation of H2+
(correct)
(wrong)
Bond breakingLecture II
SCC-DFTB and SDFTB Dissociation of H2
M. Lundberg, Y. Nishimoto, SI, Int. J. Quant. Chem. 112, 1701 (2012)
46
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
47
Extensions
M=Sc, Ti, Fe, Co, NiX=M,CHON
d-elements with X partners:Geometries very good -“ballpark” energies only
Recommendation:Use ONIOM(QM:QM),esp. ONIOM(DFT:DFTB)
Lecture II
48/25
New Confining Potentials
Wa
Conventional potential
r0
Woods-Saxon potential
k
R
rrV
0
)(
R0 = 2.7, k=2
)}(exp{1)(
0rra
WrV
r0 = 3.0, a = 3.0, W = 3.0
Typically, electron density contracts under covalent bond formation.
In standard ab initio methods, this problem can be remedied by including more basis functions.
DFTB uses minimal valence basis set: the confining potential is adopted to mimic contraction
• •+
• •
1s
σ1s
H H
H2 Δρ = ρ – Σa ρa
H2 difference density1s
Henryk Witek
Electronic Parameters DFTB Parameterization
48
2). DFTB band structure fitting• Optimization of parameter sets for Woods-Saxon confining potential (orbital
and density) and unoccupied orbital energies• Fixed orbital energies for electron occupied orbitals• Valence orbitals : [1s] for 1st row [2s, 2p] for 2nd row [ns, np, md] for 3rd – 6th row (n ≥ 3, m = n-1 for group 1-12, m = n for group 13-18)• Fitting points : valence bands + conduction bands (depending on the system,
at least including up to ~+5 eV with respect to Fermi level)
Electronic Parameters DFTB Parameterization
1). DFT band structure calculations• VASP 4.6• One atom per unit cell• PAW (projector augmented wave) method• 32 x 32 x 32 Monkhorst-Pack k-point sampling• cutoff = 400 eV• Fermi level is shifted to 0 eV
49
Band structure for Se (FCC)
Brillouin zone50
Electronic Parameters DFTB Parameterization
Particle swarm optimization (PSO)
Electronic Parameters DFTB Parameterization
51
1) Particles (=candidate of a solution) are randomly placed initially in a target space.2) – 3) Position and velocity of particles are updated based on the exchange of information between particles and particles try to find the best solution.4) Particles converges to the place which gives the best solution after a number of iterations.
•
••
••
•
• •••
•
•••
••
• •••
• ••••••••
•••••••••••
particle
1)
4)
2)
3)
Particle Swarm Optimization DFTB Parameterization
52
Each particle has randomly generated
parameter sets (r0, a, W)within some region
Generating one-center quantities (atomic
orbitals, densities, etc.)
“onecent”
Computing two-center overlap and Hamiltonian integrals for wide range of interatomic distances
“twocent”
“DFTB+”
Calculating DFTB band structure
Update the parameter sets of each particle
Memorizing the best fitness value and parameter sets
Evaluating “fitness value”(Difference DFTB – DFT band
structure using specified fitness points) “VASP”
DFTB Parameterization
orbitala [2.5, 3.5]W [0.1, 0.5]r0 [3.5, 6.5]
densitya [2.5, 3.5]W [0.5, 2.0]r0 [6.0, 10.0]
Particle Swarm Optimization
53
Example: Be, HCP crystal structure
DFTB Parameterization
Total density of states (left) and band structure (right) of Be (hcp) crystral structure
2.286
3.584
• Experimental lattice constants
• Fermi energy is shifted to 0 eV
54
Electronic Parameters
55
Band structure fitting for BCC crystal structures • space group No.
229
• 1 lattice constant (a)
Transferability checked (single point calculation)
Reference system in PSO
Experimental lattice constants available
No POTCAR file for Z ≥ 84 in VASP
a
55
56
Band structure fitting for FCC crystal structures
Reference system in PSO
Experimental lattice constants available
• space group No. 225
• 1 lattice constant (a)
a
Transferability checked (single point calculation)
56
57
Band structure fitting for SCL crystal structures
Reference system in PSO
Experimental lattice constants available
• space group No. 221
• 1 lattice constant (a)
a
Transferability checked (single point calculation)
57
58
Band structure fitting for HCP crystal structures
Reference system in PSO
Experimental lattice constants available
• space group No. 194
• 2 lattice constants (a, c)
c
a
Transferability checked (single point calculation)
58
59
Band structure fitting for Diamond crystal structures
Reference system in PSO
Experimental lattice constants available
• space group No. 227
• 1 lattice constant (a)
a
Transferability checked (single point calculation)
59
DFTB ParameterizationTransferability of optimum parameter sets for different structures
Artificial crystal structures can be reproduced well
e.g. : Si, parameters were optimized with bcc only
W (orb) 3.33938
a (orb) 4.52314
r (orb) 4.22512
W (dens) 1.68162
a (dens) 2.55174
r (dens) 9.96376
εs -0.39735
εp -0.14998
εd 0.21210
3s23p23d0
bcc 3.081
fcc 3.868
scl 2.532
diamond 5.431
Parameter sets:
Lattice constants:bcc fcc
scl diamond
Expt.
60
Influence of virtual orbital energy (3d) to Al (fcc) band structure
OPT
The bands of upper part are shifted up constantly as orb (3d) becomes larger
61
Influence of W(orb) to Al (fcc) band structure
OPT
The bands of upper part go lower as W(orb) becomes larger 62
Influence of a(orb) to Al (fcc) band structure
OPT
Too small a(orb) gives the worse band structure 63
Influence of r(orb) to Al (fcc) band structure
OPT
r(orb) strongly influences DFTB band structure 64
Correlation of r(orb) vs. atomic diameter
Atomic Number Z
Ato
mic
dia
met
er [
a.u.
] Empirically measured radii (Slater, J. C., J. Chem. Phys., 41, 3199-3204, (1964).)
Calculated radii with minimal-basis set SCF functions (Clementi, E. et al., J. Chem. Phys., 47, 1300-1307, (1967).)
Expected value using relativistic Dirac-Fock calculations (Desclaux, J. P., Atomic Data and Nuclear Data Tables, 12, 311-406, (1973).)
This work r(orb)
In particular for main group elements, there seems to be a correlation between r(orb) and atomic diameter.
65
DFTB ParameterizationElectronic Parameters
Straightforward application to binary crystal structuresRocksalt (space group No. 225)
• NaCl
• MgO
• MoC
• AgCl
…
• CsCl
• FeAl
…
B2 (space group No. 221)
Zincblende (space group No. 216)
• SiC• CuC
l• ZnS• GaA
s…
Others
• Wurtzite (BeO, AlO, ZnO, GaN, …)
• Hexagonal (BN, WC)• Rhombohedral (ABCABC
stacking sequence, BN)
more than 100 pairs tested
66
Selected examples for binary crystal structures
element name
Ga, As hyb-0-2
B, N matsci-0-2
Reference of previous work :
• d7s1 is used in POTCAR (DFT)
Further improvement can be performed for specific purpose but this preliminary sets will work as good starting points 67
68
Extensions
Analytical Hessian for DFTB and SCC-DFTBH. A. Witek, S. Irle, K. Morokuma, J. Chem. Phys. 121, 5163 (2005)
Lecture II
69
Extensions
To determine response of molecular orbitals to nuclear perturbation, one has to solve a set of iterative coupled-perturbed SCC-DFTB equations
Coupled Perturbed SCC-DFTB Equations
Lecture II
70
Frequency calculationsperformance test
all-transpolyenesCnHn+2
Performance of DFTBLecture II
71
How to treat interlayer interactions in graphite cheaply?
Addition of empirical London dispersion term!
• Ahlrichs et al., Chem. Phys. 19, 119 (1977): HFD (Hartree-Fock Dispersion), Ci parameters from expt.
• Mooij et al., J. Phys. Chem. A 103, 9872 (1999): PES with London dispersion, C6 parameters from MP2 calculations
• Elstner et al., J. Chem. Phys. 114, 5149 (2001): SCC-DFTB-D (dispersion-augmented SCC-DFTB), C6 parameters via Halgren,J. Am. Chem. Soc. 114, 7872 (1992) from expt.
• Yang et al., J. Chem. Phys. 116, 515 (2002): DFT+vdW (DFT including van der Waals interactions), C6 parameters from expt.
• Grimme, J. Comput. Chem. 25, 1463 (2004): DFT-D, C6 parameters from expt.
• … several more plus many reviews and benchmarks
Etot = EQM - f (R) C6
/R6 (+1/R8
etc. terms)
f (R): damping function Fritz London1/R6: 1922
ExtensionsLecture II
72
Extensions
London Dispersion
Lecture II
73
DFTB+DispersionElstner et al., JCP 114, 5149 (2001)
Lecture IX Extensions
74
E ~ 1/R6
damping f(R) = [1-exp(-3(rij/Rij,vdW)7)]3
Rij,vdW = 3.8 Å (for 1st row), 4.8 A (for 2nd row)
DFTB+DispersionElstner et al., JCP 114, 5149 (2001)
DFTB-D choice of C6 parameters:
- generally hybridization dependent (i.e. not simply atomic values)
- use “empirical” values for parameters to match BSSE-corrected MP2 interaction energies
R [Å]
E [ha]
ExtensionsLecture II
75
Application to GraphiteExtensions
DFTB-D
Lecture II
Principles of GRRM
ADDAnharmonic downward distortion
S. Maeda and K. Ohno, J. Phys. Chem. A, 2005, 109, 5742.
76
UDC
DDC
One of the most powerful and reliable methods to find reaction pathways.
Extensions
GRRM with DFTB
Lecture II
Example: Formaldehyde (RB3LYP/6-31G(d))
4EQs
9TSs
3DDCs
9UDCs
DDC at DFTB
DFTB B3LYP Match
EQ 4 4 4
TS 9 9 6 ~ 8
DDC 4 3 3
UDC 7 9 7: Reproduced by DFTB
: Found
TS at DFTB
77
ExtensionsLecture II
78
Density-Functional Tight-Binding
1. Tight-Binding
2. Density-Functional Tight-Binding (DFTB)
3. Bond Breaking in DFTB
4. Extensions
5. Performance and Applications
79
Performance for small organic molecules (mean absolut deviations)• Reaction energies: ~ 5 kcal/mole
• Bond-lenghts: ~ 0.014 A°
• Bond angles: ~ 2°
• Vib. Frequencies: ~6-7 %
Performance
SCC-DFTB: general comparison with experiment
Lecture II
80
Performance
Accuracy of DFTB Geometries and Energies for Fullerene Isomers
Fullerene Isomers Geometries and Energies vs B3LYP/6-31G(d)G. Zheng, SI, M. Elstner, K. Morokuma, Chem. Phys. Lett. 412, 210 (2005)
Geometries
Energetics
• 102 Fullerene Isomers• small cage non-IPR C20-C36 (35), large cage IPR C70-C86 (67)
R2: Energy linear regression between E(Method) and E(B3LYP)
Lecture II
What about non-cage carbon cluster structures? Some C28 isomers as example (from Scuseria, CPL 301, 98 (1999))
PerformanceLecture II
Performance
What about non-cage carbon cluster structures?Some C28 isomers as example TACC’04 Symp. Proceedings
AM1 and PM3 are performing very bad!DFTB includes effects of polarization functions through parameterization
Wrong minimum structures!
Lecture II
83
Performance
Accuracy of DFTB GeometriesTable 3. The relative energies (in eV) of 11 different isomeric singlet structures of C28 calculated with B3LYP/6-31G(d), and
DFTB.
Structure a B3LYP/6-31G(d) DFTBB3LYP/6-31G(d)
// DFTBbuckyD2 0.00 0.00 0.00
ring 3.32 8.10 3.43
c24-6 3.17 3.56 3.66
2+2r14 5.08 9.66 5.22
2+2r16 6.01 10.25 6.13
c20-6o 5.41 5.52 5.96
c20-6 m 5.57 5.62 6.09
2 + 4 7.97 10.28 8.52
central7 5.86 6.07 6.47
8 + 8 7.43 9.43 7.41
4 + 4 9.91 14.27 10.20
R2 b 0.75 0.99
a Structures illustrated below, with the labels taken from “Portmann, S.; Galbraith, J. M.; Schaefer, H. F.; Scuseria, G. E.; Lüthi, H. P. Chem. Phys. Lett. 1999, 301, 98-104.”b Squared correlation coefficients R2 in the linear regression analysis with B3LYP/6-31G(d) energies.
Lecture II
84
Performance
Accuracy of DFTB frequencies
84
calculated frequencies scaled frequenciesTesting set of 66 molecules, 1304 distinct vibrational modes
Lecture II
85
Performance
Accuracy of DFTB frequenciesTesting set of 66 molecules, 1304 distinct vibrational modes
mean absolute deviation
standard deviation
maximal absolute deviation
scalingfactor
SCC-DFTB 56 cm-1 82 cm-1 529 cm-1 0.9933
DFTB 60 cm-1 87 cm-1 536 cm-1 0.9917
AM1 69 cm-1 95 cm-1 670 cm-1 0.9566
PM3 74 cm-1 102 cm-1 918 cm-1 0.9762
HF/cc-pVDZ 30 cm-1 49 cm-1 348 cm-1 0.9102
BLYP/cc-pVDZ 34 cm-1 47 cm-1 235 cm-1 1.0043
B3LYP/cc-pVDZ 29 cm-1 42 cm-1 246 cm-1 0.9704
Lecture II
triphenylene
Energy, frequencies, andRaman and IR intensitiescalculations
DFT BLYP/cc-pVDZLinux 2.4GHz machine
32 hours
SCC-DFTBLinux 333MHz machine
24 seconds
Performance
Efficiency of DFTB frequencies
Lecture II
Performance
Improvement of DFTB ERep
H. A. Witek, et al, J. Theor. Comp. Chem. 4, 639 (2005) and others
Lecture II
88
H. A. Witek, SI, G. Zheng, W. A. de Jong, K. Morokuma, J. Chem. Phys. 125, 214706 (2005)
Performance
C28 D2
Harmonic IR and Raman Spectra of C28
Lecture II
89
H. A. Witek, SI, G. Zheng, W. A. de Jong, K. Morokuma, J. Chem. Phys. 125, 214706 (2005)
Performance
Harmonic IR and Raman Spectra of C60
C60 D2h~Ih
Lecture II
90
H. A. Witek, SI, G. Zheng, W. A. de Jong, K. Morokuma, J. Chem. Phys. 125, 214706 (2005)
Performance
Harmonic IR and Raman Spectra of C70
C70 D5h
Lecture II
91
Performance
SCC-DFTB: Systematic comparison with other methods by Walter Thiel et al.
Thiel and coworkers, J. Phys. Chem. A 111, 5751 (2007)
(reference: exptl. DH0)
Lecture II
92
Performance
Thiel and coworkers, J. Phys. Chem. A 111, 5751 (2007)
SCC-DFTB: Systematic comparison with other methods by Walter Thiel et al.
Lecture II
93
Performance
But: NCC- and SCC-DFTB for radicals: own comparison with B3LYP/6-311G**
Lecture II
94
Performance
NCC- and SCC-DFTB for radicals: own comparison
NCC-DFTB
B3LYP/6-311G(d,p)
SCC-DFTB
B3LYP/6-311G(d,p)
Lecture II
95
A B C
DFT:PW91[1] -6.24 -5.63 -1.82
SCC-DFTB[2] -5.17 -4.68 -1.86
Adhesion energies (eV/atom)
A B C
PW91: An ultrasoft pseudopotential with a plane-wave cutoff of 290 eV for the single metal and the projector augmented wave method with a plane-wave cutoff of 400 eV for the metal cluster
Fe-Fe and Fe-C DFTB parameters from: G. Zheng et al., J. Chem. Theor. Comput. 3, 1349 (2007)
[1] Phys. Rev. B 75, 115419 (2007) [2] Fermi broadening=0.13 eV
H10C60Fe H10C60Fe H10C60Fe55
Fe55 icosahedron
H-terminated (5,5) armchair SWNT + Fe atom/cluster
PerformanceLecture II
96
Acknowledgements
• Marcus Elstner• Jan Knaup• Alexey Krashenninikov• Yasuhito Ohta• Thomas Heine• Keiji Morokuma• Marcus Lundberg• Yoshio Nishimoto• Some others
Acknowledgements
Lecture II