Datasets2Tools – Enriching DataMed with Canned Analyses Denis Torre BD2K All Hands Meeting November 29 th , 2016
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Datasets2Tools – Enriching DataMed with
Canned AnalysesDenis Torre
BD2K All Hands MeetingNovember 29th, 2016
Extracting knowledge from biomedical data
Dataset-Tool Associations
Extract Knowledge
Biomedical repositories
Tool Repositories
Computational Tools
Connecting tools to data
?Biomedical datasets Computational tools
The Canned Analysis
Biomedical datasets Computational tools
Canned Analysis
The Canned Analysis
A new type of digital object:• Dataset URL
• Tool URL
• Canned Analysis URL
• Additional: analysis description and metadata
Canned Analysis
The Canned Analysis
A new type of digital object:
• Metadata structure is independent of data or tool type
• Indexed and easily retrieved in a relational database
• Sharable with an URL or iconCanned Analysis
Datasets2Tools Availability
Datasets2Tools Database
Chrome Browser
Extension
Website
API
User
Enriching DataMed with Canned Analyses
Extension – Browse Canned Analyses
Accessing Canned Analysis Results
Accessing Canned Analysis Metadata
Sharing Canned Analyses
Tool Information
Enriching GEO with Canned Analyses
Enriching LINCS with Canned Analyses
Enriching LINCS with Canned Analyses
Enriching NURSA with Canned Analyses
Enriching NURSA with Canned Analyses
Thank you
The Datasets2Tools Database
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